Rh6BG202500

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002755
Physical Location & Seq
Forward (+)
38221918 .. 38229210
7293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG202500.1

Sequence Viewer

Length: 600 bp
ATGACTGGATGTATGGTTCTCTTTCCTGTTGCTGTTACATTCTTCATCACTTGGTGGTTTATTCAGTTCGTGGATGGTTTCTTCAGTCCATTATATGCGAGGCTTGGTATTAATATATTTGGCCTAGGGTTTGTTACATCCCTAATTTTTATGTTCTTAGTCGGTGTATTTGCTTCATCATGGATGGGTGCAACTGTTTTCTCGGTTGGAGAGTGGTTCATAAAACGAATGCCCTTTATGAAGCACATATACTCAGCATCCAAACAAATTAGTGCTGCAATTTCTCCAGACCAAAATACCACCGCTTTTAAAGAGGTTGCAATTATCCGTCATCCTAGGATTGGTGAATACGCGTTCGGTTTTATCACATCATCTGTAATCCTTCAGCGGGATGATGGAGATGAGGAGCTGTGCAGTGTTTATGTCCCAACAAACCATCTATACATTGGGGATATTTTTTTGGTCAATTCCAAAGAGATCATACGACCGAATTTGTCAATTCGAGAAGGCATAGAGATCATAATATCAGTTGGTATGACAATGCCACAGGTGATTTCTCCAATTGAAAGGGTTCCTCTTAACAGGATGGTATCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

199

Amino Acids

22.45

Weight (kDa)

6.28

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 46 - 146 1.9e-26 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 353
AciI CCGC 2 cut(s) 303, 388
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 2 cut(s) 67, 368
AdeI CACNNNGTG 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 341, 388
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 566
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 490
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 570
AspA2I CCTAGG 2 cut(s) 124, 335
AsuHPI GGTGA 2 cut(s) 356, 562
AvrII CCTAGG 2 cut(s) 124, 335
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BbvI GCAGC 1 cut(s) 262
BccI CCATC 5 cut(s) 68, 178, 389, 444, 580
BfaI CTAG 2 cut(s) 125, 336
BisI GCNGC 1 cut(s) 276
BlnI CCTAGG 2 cut(s) 124, 335
BlsI GCNGC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 573
BmsI GCATC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 124, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 388
Bse1I ACTGG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 124, 335
BseGI GGATG 8 cut(s) 14, 79, 137, 189, 257, 331, 397, 591
BseLI CCNNNNNNNGG 2 cut(s) 341, 388
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 341, 388
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 477, 516
BspACI CCGC 2 cut(s) 303, 388
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 573
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 124, 335
BssMI GATC 2 cut(s) 477, 516
BssT1I CCWWGG 2 cut(s) 124, 335
Bst4CI ACNGT 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 157, 253
BstF5I GGATG 8 cut(s) 14, 79, 137, 189, 257, 331, 397, 591
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 2 cut(s) 480, 519
BstMBI GATC 2 cut(s) 477, 516
BstMCI CGRYCG 1 cut(s) 488
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 8 cut(s) 14, 79, 137, 189, 257, 331, 397, 591
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 421
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 103, 123, 409
CviKI_1 RGCY 3 cut(s) 103, 123, 409
DdeI CTNAG 2 cut(s) 157, 253
DpnI GATC 2 cut(s) 479, 518
DpnII GATC 2 cut(s) 477, 516
DraI TTTAAA 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 124, 335
Eco57I CTGAAG 2 cut(s) 67, 368
EcoT14I CCWWGG 2 cut(s) 124, 335
ErhI CCWWGG 2 cut(s) 124, 335
FaeI CATG 1 cut(s) 183
FaqI GGGAC 1 cut(s) 410
FatI CATG 1 cut(s) 179
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 7 cut(s) 21, 86, 124, 196, 244, 318, 404
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 125, 336
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 183
HphI GGTGA 2 cut(s) 356, 562
Hpy188III TCNNGA 2 cut(s) 287, 503
HpyAV CCTTC 2 cut(s) 392, 500
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 191, 278, 320, 414
HpyF3I CTNAG 2 cut(s) 157, 253
Hsp92II CATG 1 cut(s) 183
Kzo9I GATC 2 cut(s) 477, 516
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 4 cut(s) 39, 300, 533, 568
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 266
MaeI CTAG 2 cut(s) 125, 336
MaeIII GTNAC 2 cut(s) 34, 133
MalI GATC 2 cut(s) 479, 518
MboI GATC 2 cut(s) 477, 516
MboII GAAGA 2 cut(s) 34, 73
MfeI CAATTG 1 cut(s) 561
MluCI AATT 8 cut(s) 144, 267, 279, 321, 466, 490, 498, 561
MluI ACGCGT 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 93, 307, 397, 585
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 3 cut(s) 111, 309, 579
MspA1I CMGCKG 1 cut(s) 388
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 234
MvnI CGCG 1 cut(s) 353
NdeII GATC 2 cut(s) 477, 516
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 573
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 570
PkrI GCNGC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 573
SaqAI TTAA 3 cut(s) 111, 309, 579
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 477, 516
SetI ASST 3 cut(s) 318, 411, 552
SfaNI GCATC 1 cut(s) 266
Sse9I AATT 8 cut(s) 144, 267, 279, 321, 466, 490, 498, 561
SsiI CCGC 2 cut(s) 303, 388
SspMI CTAG 2 cut(s) 125, 336
StyI CCWWGG 2 cut(s) 124, 335
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 502
TaqII GACCGA 1 cut(s) 502
TasI AATT 8 cut(s) 144, 267, 279, 321, 466, 490, 498, 561
Tru1I TTAA 3 cut(s) 111, 309, 579
Tru9I TTAA 3 cut(s) 111, 309, 579
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 34, 165, 208, 254
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 421
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmaJI CCTAGG 2 cut(s) 124, 335
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 2 cut(s) 125, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.