Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

22217086 .. 22219936

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAATTCGCTGATACATATCAGCAATTTATGAAAGAGCAAAAAGAAGAAGTACCAGTCATCCGACTAAGCAATCTCAAGGCTGTTTTGAAGAACTGTGAGATCAAGGACATGCACCCCAAAGATAGAAATACTGAAGAAGACTGTGATTGTCCAGTATGTGACAGGACATTTTTCCCTTCCATTCTCAAGGACATGTCTGTGGTAGTGAACTTCTTTAACAAGCGTGCACAGGAGATACTATACTCCCATTTGGCTTCTGGCTTTAAGAAGTACATTTTACGTCTTAAAAGGAAGTTAAAGTTGAAAGCAAGCCATGAAAATATGATAAAAGAAGCGCAAGACCTTGTAGGCTACGCTACAATTACTGCTTTTGCTATACAGAAGATCCTGAAGAAATATGATAAGGTTCACTGCTCGAAGAAGGGACAAAGGTTTAAATATCAAGCTCAAACTATGAAACTTGAGCTCCTAAAATCCCCATGGCTTTTGGAACTAATGGCATTCCACATTAACGTGAGTAAAAACAGAGATGAAAGCAAGACAATTTGGTTTGTTGACTTCTCGCTTCACAAAGATGATGAGCACAGACCACTGTTTTTGGTTAACCTTCCCCATTCAATAGAGCTGAATCTTGATCTAACATGCCCAATTTGCTTGGACACTGTCTTTGATCCAGTTTTCCTCACCTGCAGCCATATACTCTGCCATATGTGTGCTTGTTCGGTTGCATCAGTCACCATTGTTGAGGGACTACGGGCTGCAACTTCTGCAAAGAAATGCCCAATTTGCCGAAAGGGTGGGGTATTTGGAGGCGCAGTGCAGTTGGCTGAGCTAAGCATGCTACTGAGGCGAAGTATGCCAAAGTATTGGAAAGGACGCCTTCAGAGGGAACGGCAAGAGCGAATCAAACAAGCAAAGGAGTTCTGGGAGTCTGAGTGTCGTTTATTTCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

319

Amino Acids

37.15

Weight (kDa)

9.18

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AclWI	GGATC	2 cut(s)	382, 668
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	3 cut(s)	156, 413, 869
AcyI	GRCGYC	1 cut(s)	880
AfaI	GTAC	2 cut(s)	54, 275
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	91, 307, 621
AluBI	AGCT	4 cut(s)	449, 469, 628, 835
AluI	AGCT	4 cut(s)	449, 469, 628, 835
Alw21I	GWGCWC	3 cut(s)	232, 471, 588
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	382, 668
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	693, 761
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspLEI	GCGC	2 cut(s)	340, 818
AsuHPI	GGTGA	2 cut(s)	679, 730
BaeGI	GKGCMC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	232, 471, 588
BbvI	GCAGC	2 cut(s)	705, 748
BceAI	ACGGC	1 cut(s)	911
BfmI	CTRYAG	1 cut(s)	691
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	2 cut(s)	694, 762
BlpI	GCTNAGC	2 cut(s)	831, 836
BlsI	GCNGC	2 cut(s)	695, 763
BmsI	GCATC	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	147
Bpu1102I	GCTNAGC	2 cut(s)	831, 836
BpuEI	CTTGAG	3 cut(s)	62, 173, 485
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	880
BsaJI	CCNNGG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	6 cut(s)	453, 483, 804, 834, 923, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	3 cut(s)	56, 155, 677
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMII	CTCAG	3 cut(s)	822, 839, 927
BseNI	ACTGG	3 cut(s)	56, 155, 677
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	705, 748
BsgI	GTGCAG	1 cut(s)	842
BsiHKAI	GWGCWC	3 cut(s)	232, 471, 588
BslFI	GGGAC	2 cut(s)	441, 765
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmFI	GGGAC	2 cut(s)	441, 765
BsmI	GAATGC	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	232, 471, 588
Bsp143I	GATC	4 cut(s)	102, 387, 637, 673
Bsp1720I	GCTNAGC	2 cut(s)	831, 836
Bsp19I	CCATGG	1 cut(s)	482
BspCNI	CTCAG	3 cut(s)	823, 840, 928
BspMAI	CTGCAG	1 cut(s)	695
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	382, 668
BsrI	ACTGG	3 cut(s)	56, 155, 677
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	4 cut(s)	102, 387, 637, 673
BssNI	GRCGYC	1 cut(s)	880
BssT1I	CCWWGG	1 cut(s)	482
Bst4CI	ACNGT	4 cut(s)	98, 146, 597, 667
BstACI	GRCGYC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	228, 313, 842
BstDEI	CTNAG	5 cut(s)	68, 831, 836, 848, 936
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	340, 818
BstKTI	GATC	4 cut(s)	105, 390, 640, 676
BstMBI	GATC	4 cut(s)	102, 387, 637, 673
BstMWI	GCNNNNNNNGC	6 cut(s)	654, 770, 789, 841, 850, 859
BstNSI	RCATGY	4 cut(s)	115, 199, 648, 844
BstSFI	CTRYAG	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	705, 748
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	2 cut(s)	412, 825
BtsIMutI	CAGTG	4 cut(s)	412, 593, 663, 825
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	3 cut(s)	228, 313, 842
CfoI	GCGC	2 cut(s)	340, 818
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	53, 274
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	6 cut(s)	112, 196, 317, 483, 645, 841
CviQI	GTAC	2 cut(s)	53, 274
DdeI	CTNAG	5 cut(s)	68, 831, 836, 848, 936
DpnI	GATC	4 cut(s)	104, 389, 639, 675
DpnII	GATC	4 cut(s)	102, 387, 637, 673
DraI	TTTAAA	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	3 cut(s)	156, 413, 869
EcoICRI	GAGCTC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	6 cut(s)	115, 199, 320, 486, 648, 844
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FaqI	GGGAC	2 cut(s)	441, 765
FatI	CATG	6 cut(s)	111, 195, 316, 482, 644, 840
FauNDI	CATATG	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	694, 762
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	694, 762
GlaI	GCGC	2 cut(s)	339, 817
GluI	GCNGC	2 cut(s)	694, 762
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	2 cut(s)	340, 818
Hin1I	GRCGYC	1 cut(s)	880
Hin1II	CATG	6 cut(s)	115, 199, 320, 486, 648, 844
Hin6I	GCGC	2 cut(s)	338, 816
HinP1I	GCGC	2 cut(s)	338, 816
HincII	GTYRAC	2 cut(s)	559, 607
HindII	GTYRAC	2 cut(s)	559, 607
HinfI	GANTC	3 cut(s)	631, 906, 932
HpaI	GTTAAC	1 cut(s)	607
HphI	GGTGA	2 cut(s)	679, 730
Hpy166II	GTNNAC	5 cut(s)	211, 230, 412, 559, 607
Hpy188I	TCNGA	3 cut(s)	65, 888, 937
Hpy188III	TCNNGA	3 cut(s)	391, 635, 953
Hpy8I	GTNNAC	5 cut(s)	211, 230, 412, 559, 607
HpyAV	CCTTC	4 cut(s)	189, 418, 620, 893
HpyCH4III	ACNGT	4 cut(s)	98, 146, 597, 667
HpyCH4IV	ACGT	2 cut(s)	283, 516
HpyCH4V	TGCA	7 cut(s)	115, 230, 693, 731, 764, 773, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	654, 770, 789, 841, 850, 859
HpyF3I	CTNAG	5 cut(s)	68, 831, 836, 848, 936
HpySE526I	ACGT	2 cut(s)	283, 516
Hsp92I	GRCGYC	1 cut(s)	880
Hsp92II	CATG	6 cut(s)	115, 199, 320, 486, 648, 844
HspAI	GCGC	2 cut(s)	338, 816
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	102, 387, 637, 673
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	2 cut(s)	705, 748
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	2 cut(s)	283, 516
MaeIII	GTNAC	2 cut(s)	161, 736
MalI	GATC	4 cut(s)	104, 389, 639, 675
MboI	GATC	4 cut(s)	102, 387, 637, 673
MboII	GAAGA	7 cut(s)	59, 103, 149, 152, 397, 406, 433
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	232, 471, 588
MluCI	AATT	6 cut(s)	5, 26, 363, 546, 651, 786
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	695, 742, 806, 843, 882
MseI	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
MslI	CAYNNNNRTG	4 cut(s)	200, 515, 576, 714
Mva1269I	GAATGC	1 cut(s)	503
MwoI	GCNNNNNNNGC	6 cut(s)	654, 770, 789, 841, 850, 859
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	4 cut(s)	102, 387, 637, 673
NlaIII	CATG	6 cut(s)	115, 199, 320, 486, 648, 844
NmuCI	GTSAC	2 cut(s)	161, 736
NspI	RCATGY	4 cut(s)	115, 199, 648, 844
PaeI	GCATGC	1 cut(s)	844
PaqCI	CACCTGC	1 cut(s)	698
PciI	ACATGT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	901
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	631, 906
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	695, 763
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
PscI	ACATGT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	2 cut(s)	54, 275
RsaNI	GTAC	2 cut(s)	53, 274
RseI	CAYNNNNRTG	4 cut(s)	200, 515, 576, 714
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
SatI	GCNGC	2 cut(s)	694, 762
Sau3AI	GATC	4 cut(s)	102, 387, 637, 673
SchI	GAGTC	1 cut(s)	941
SduI	GDGCHC	3 cut(s)	232, 471, 588
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	4 cut(s)	200, 515, 576, 714
SmlI	CTYRAG	3 cut(s)	77, 188, 464
SmoI	CTYRAG	3 cut(s)	77, 188, 464
SphI	GCATGC	1 cut(s)	844
Sse9I	AATT	6 cut(s)	5, 26, 363, 546, 651, 786
SstI	GAGCTC	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	4 cut(s)	98, 146, 597, 667
TaiI	ACGT	2 cut(s)	286, 519
TaqI	TCGA	1 cut(s)	419
TasI	AATT	6 cut(s)	5, 26, 363, 546, 651, 786
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	631, 906
Tru1I	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
Tru9I	TTAA	7 cut(s)	219, 267, 288, 299, 438, 513, 606
TscAI	CASTG	4 cut(s)	419, 600, 670, 825
TseFI	GTSAC	2 cut(s)	161, 736
TseI	GCWGC	2 cut(s)	693, 761
Tsp45I	GTSAC	2 cut(s)	161, 736
TspDTI	ATGAA	5 cut(s)	17, 47, 333, 473, 549
TspRI	CASTG	4 cut(s)	419, 600, 670, 825
Tth111I	GACNNNGTC	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	4 cut(s)	115, 199, 648, 844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.