Rroxscaffold_7G00194080

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002755
Physical Location & Seq
Reverse (-)
35794871 .. 35799715
4845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194080.1

Sequence Viewer

Length: 495 bp
ATGGCGGAAGCTAAAGAGTCAACGTCCAGTCCACTCACTCAACCCGATCCTGAAGATTTTCCCAAGTCTCCGCCCAGCTCCCCCAACTCCTCCACTCGCAAGGCTTGCTATGCAGTGCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTATGGTTCTCTTTCCTGTTGCTGTTACATTCTTCATCACTTGGTGGTTTATTCAGTTCGTGGATGGTTTCTTCAGTCCATTATATGCGAGGCTTGGTATTAATATATTTGGCCTAGGGTTTGTTACATCCCTAATTTTTATGTTCTTAGTCGGTGTGTTTGCTTCATCATGGATGGGTGCAACTGTTTTCTCGGTTGGAGAGTGGTTCATAAAACGAATGCCCTTTATGAAGCACATATACTCAGCATCCAAACAAATTAGTGCTGCAATTTCTCCAGGTAATTACTTTAATTTTAAATTTTTGAACCACTTTTACCTACGTGGAGAATACTTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

164

Amino Acids

18.64

Weight (kDa)

9.33

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 94 - 144 1e-12 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 71
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 2 cut(s) 72, 211
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 460
AjnI CCWGG 1 cut(s) 430
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 11, 78
AluI AGCT 2 cut(s) 11, 78
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 72, 136
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 452
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 57
AspA2I CCTAGG 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 406
BccI CCATC 2 cut(s) 212, 322
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 72, 136
BfaI CTAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 420
BlnI CCTAGG 1 cut(s) 268
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 410
BpmI CTGGAG 2 cut(s) 104, 414
BsaAI YACGTR 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 27, 154
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 5 cut(s) 158, 223, 281, 333, 401
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 27, 154
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 72, 136
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 5, 71
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 144
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 27, 154
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 301, 397
BstF5I GGATG 5 cut(s) 158, 223, 281, 333, 401
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 72, 136
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 105, 110
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 5 cut(s) 158, 223, 281, 333, 401
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 144
CviAII CATG 2 cut(s) 145, 324
CviJI RGCY 5 cut(s) 11, 78, 104, 247, 267
CviKI_1 RGCY 5 cut(s) 11, 78, 104, 247, 267
DdeI CTNAG 2 cut(s) 301, 397
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 451
DraIII CACNNNGTG 1 cut(s) 198
EciI GGCGGA 2 cut(s) 20, 60
Eco130I CCWWGG 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 72, 211
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 2 cut(s) 148, 327
FatI CATG 2 cut(s) 144, 323
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 5 cut(s) 165, 230, 268, 340, 388
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 1 cut(s) 269
GluI GCNGC 1 cut(s) 420
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 104, 414
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 2 cut(s) 148, 327
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 21, 32
Hpy188III TCNNGA 3 cut(s) 50, 121, 145
Hpy8I GTNNAC 2 cut(s) 21, 32
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 23, 475
HpyCH4V TGCA 3 cut(s) 113, 335, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 110
HpyF3I CTNAG 2 cut(s) 301, 397
HpySE526I ACGT 2 cut(s) 23, 475
Hsp92II CATG 2 cut(s) 148, 327
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 83, 123
LpnPI CCDG 8 cut(s) 40, 63, 88, 134, 135, 183, 417, 444
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 23, 475
MaeIII GTNAC 2 cut(s) 178, 277
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 65, 178, 217
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 288, 411, 423, 436, 445, 452
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 2 cut(s) 100, 237
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 255, 444, 450
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 105, 110
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 148, 327
PagI TCATGA 1 cut(s) 144
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 430
PsrI GAACNNNNNNTAC 2 cut(s) 452, 484
SaqAI TTAA 3 cut(s) 255, 444, 450
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 13, 26, 80, 436, 474, 478
SfaNI GCATC 1 cut(s) 410
Sse9I AATT 6 cut(s) 288, 411, 423, 436, 445, 452
SsiI CCGC 2 cut(s) 5, 71
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 26, 478
TasI AATT 6 cut(s) 288, 411, 423, 436, 445, 452
Tru1I TTAA 3 cut(s) 255, 444, 450
Tru9I TTAA 3 cut(s) 255, 444, 450
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 5 cut(s) 133, 178, 309, 352, 398
TspRI CASTG 1 cut(s) 120
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 452
XmaJI CCTAGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.