Rorug02G0226000

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002755
Physical Location & Seq
Reverse (-)
22192641 .. 22193723
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0226000.1

Sequence Viewer

Length: 1083 bp
ATGGGACGGAAAACAAAGATCAAAGACCTTCTAATGGGGGCAATCAAAGACAAAGCCTCTCAGAGCAAAGCAGCAATCCTCTCCACAATCAACACCGCTGCCAGCAGTACTCCTCAATCATCTCAATCTCTCCACCTCGCCCTCCTCCGCGCCACCACCCACGACCCTTTCTCACCTCCACCAGCCAAACACCTTGCCACGCTCCTCTCCTTCGGACACAGCTCGCGTGCCACCGCCTCCGCCGCCATCGAAGCCCTCATGGATCGCCTCCAAACCACCCAAAACTCCTCCGTCGCACTCAAGTGCCTCATCGCCGTTCACCACATCGTCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCTCCGTCTTCCCCTCCACTGGCGGCAGAAACTACCTTAAACTCTCCAACTTCCGGGACAACTCTAGCCCCATTTCCTGGGACCTCTCGTCCTGGGTCAGATGGTACGGACAGTACGTAGAAAACCTCATCATCACTTCTCGGTTCTTAGGTTTCTTCTTAGGATCGAACTCGTGCCTTGCCGATAGAGACAGACAAGAAGAGAGAATCTCAGCGCTCATGAATTCCGACCTGGTTAGGGAGACCGAGTCGCTGGTGAGTCTACTGGAAGAGATTTGCCGGCGGCCTGACTTTTCAAGTTTGAACGGTAACAGGTTGGTCGGCGAGATATTGGGTTTGGTGGGCCAGGACCAGATTGCCGCAATGAACGAGGTTTCGGTCCGAGTCAAGGAGTTTGATGAGAGACTGAGTTGCATGAGCTTTGGCGACTCGGTCGAGTTGCTGAGCTCGTTAAAGAGGTCGGAGGATTGCAAGGAGAGGCTTCTGACAGTGTCGTCGGCGGTGAAGAGTGATTTGGTAGAGAGGTTTTGGGGGTTGATGAGAGAGATGAAGGGAAGGGTTAAGAAAGAGAAAGAGAAAGAGGGTGGTAAGTTGGTGGTGATGGCGGTGAGGAGAGACAGTGTGGGTGAGTCGGCTCGGTTTGATGACCGAGTTTTAAGGTCGTATGACTCGGTCCGATTCTCCTCAGGAAGGTTGAAGGTGAGCTTGGAATCATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

360

Amino Acids

40.02

Weight (kDa)

9.17

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 45 - 281 1.7e-15 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 853
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 1 cut(s) 622
AccII CGCG 2 cut(s) 150, 226
AclWI GGATC 2 cut(s) 270, 532
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 4 cut(s) 109, 335, 467, 476
AfeI AGCGCT 1 cut(s) 576
AfiI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1050
AgsI TTSAA 3 cut(s) 657, 664, 1057
AhdI GACNNNNNGTC 1 cut(s) 448
AjnI CCWGG 5 cut(s) 351, 437, 452, 591, 705
AjuI GAANNNNNNNTTGG 4 cut(s) 857, 889, 1049, 1081
AleI CACNNNNGTG 1 cut(s) 301
AluBI AGCT 5 cut(s) 222, 361, 780, 807, 1065
AluI AGCT 5 cut(s) 222, 361, 780, 807, 1065
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 4 cut(s) 543, 596, 757, 969
AlwI GGATC 2 cut(s) 270, 532
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 2 cut(s) 644, 703
ApeKI GCWGC 2 cut(s) 71, 98
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 2 cut(s) 152, 577
AspS9I GGNCC 6 cut(s) 355, 442, 703, 709, 739, 1033
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 8 cut(s) 165, 311, 628, 874, 970, 979, 998, 1072
AvaII GGWCC 5 cut(s) 355, 442, 709, 739, 1033
AxyI CCTNAGG 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 809
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 2 cut(s) 83, 85
BccI CCATC 3 cut(s) 254, 456, 955
BceAI ACGGC 2 cut(s) 299, 352
BciT130I CCWGG 5 cut(s) 353, 439, 454, 593, 707
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 4 cut(s) 543, 596, 757, 969
BfaI CTAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 6 cut(s) 72, 99, 243, 385, 644, 720
BlpI GCTNAGC 1 cut(s) 803
BlsI GCNGC 6 cut(s) 73, 100, 244, 386, 645, 721
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 6 cut(s) 353, 416, 439, 454, 593, 707
Bme18I GGWCC 5 cut(s) 355, 442, 709, 739, 1033
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgT120I GGNCC 6 cut(s) 355, 442, 703, 709, 739, 1033
BmiI GGNNCC 2 cut(s) 340, 443
BmrFI CCNGG 6 cut(s) 353, 416, 439, 454, 593, 707
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 438, 453
BsaXI ACNNNNNCTCC 6 cut(s) 347, 377, 593, 623, 964, 994
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1050
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 2 cut(s) 385, 630
Bse21I CCTNAGG 1 cut(s) 1045
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 5 cut(s) 353, 439, 454, 593, 707
BseDI CCNNGG 2 cut(s) 438, 453
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1050
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 5 cut(s) 74, 585, 758, 794, 1059
BseNI ACTGG 2 cut(s) 385, 630
BseRI GAGGAG 6 cut(s) 102, 134, 194, 277, 985, 1033
BseXI GCAGC 2 cut(s) 83, 85
Bsh1236I CGCG 2 cut(s) 150, 226
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 2 cut(s) 646, 705
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 2 cut(s) 415, 640
BslFI GGGAC 3 cut(s) 18, 431, 455
BslI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1050
BsmAI GTCTC 4 cut(s) 543, 596, 757, 969
BsmFI GGGAC 3 cut(s) 18, 431, 455
BsnI GGCC 2 cut(s) 646, 705
Bso31I GGTCTC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 809
Bsp143I GATC 3 cut(s) 18, 262, 524
Bsp1720I GCTNAGC 1 cut(s) 803
BspANI GGCC 2 cut(s) 646, 705
BspCNI CTCAG 5 cut(s) 73, 584, 759, 795, 1058
BspFNI CGCG 2 cut(s) 150, 226
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 340, 443
BspPI GGATC 2 cut(s) 270, 532
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 2 cut(s) 385, 630
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 2 cut(s) 438, 453
BssMI GATC 3 cut(s) 18, 262, 524
BssSI CACGAG 1 cut(s) 532
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 5 cut(s) 353, 439, 454, 593, 707
Bst4CI ACNGT 4 cut(s) 474, 668, 850, 980
Bst6I CTCTTC 3 cut(s) 555, 624, 860
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 4 cut(s) 103, 224, 228, 641
BstDEI CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1045
BstENI CCTNNNNNAGG 1 cut(s) 1048
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 2 cut(s) 150, 226
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 2 cut(s) 152, 577
BstKTI GATC 3 cut(s) 21, 265, 527
BstMAI GTCTC 4 cut(s) 543, 596, 757, 969
BstMBI GATC 3 cut(s) 18, 262, 524
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNI CCWGG 5 cut(s) 353, 439, 454, 593, 707
BstSCI CCNGG 6 cut(s) 351, 414, 437, 452, 591, 705
BstSNI TACGTA 1 cut(s) 478
BstUI CGCG 2 cut(s) 150, 226
BstV1I GCAGC 2 cut(s) 83, 85
BstV2I GAAGAC 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 1045
BsuRI GGCC 2 cut(s) 646, 705
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 378, 855, 985
Cac8I GCNNGC 4 cut(s) 103, 224, 228, 641
CciI TCATGA 1 cut(s) 579
CfoI GCGC 2 cut(s) 152, 577
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 6 cut(s) 355, 442, 703, 709, 739, 1033
CpoI CGGWCCG 2 cut(s) 739, 1033
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 4 cut(s) 108, 334, 466, 475
CspI CGGWCCG 2 cut(s) 739, 1033
CviAII CATG 4 cut(s) 259, 580, 775, 1074
CviQI GTAC 4 cut(s) 108, 334, 466, 475
DdeI CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1045
DpnI GATC 3 cut(s) 20, 264, 526
DpnII GATC 3 cut(s) 18, 262, 524
DrdI GACNNNNNNGTC 1 cut(s) 853
DriI GACNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 3 cut(s) 555, 624, 860
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 3 cut(s) 555, 624, 860
EciI GGCGGA 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 807
Eco105I TACGTA 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 809
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 5 cut(s) 355, 442, 709, 739, 1033
Eco47III AGCGCT 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 807
Eco81I CCTNAGG 1 cut(s) 1045
EcoICRI GAGCTC 1 cut(s) 807
EcoNI CCTNNNNNAGG 1 cut(s) 1048
EcoO109I RGGNCCY 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 5 cut(s) 351, 437, 452, 591, 705
EcoT38I GRGCYC 1 cut(s) 809
FaeI CATG 4 cut(s) 262, 583, 778, 1077
FaiI YATR 5 cut(s) 260, 581, 776, 1026, 1075
FalI AAGNNNNNCTT 2 cut(s) 1049, 1081
FaqI GGGAC 3 cut(s) 18, 431, 455
FatI CATG 4 cut(s) 258, 579, 774, 1073
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 6 cut(s) 72, 99, 243, 385, 644, 720
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 6 cut(s) 72, 99, 243, 385, 644, 720
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 151, 576
GluI GCNGC 6 cut(s) 72, 99, 243, 385, 644, 720
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 2 cut(s) 646, 705
HapII CCGG 2 cut(s) 415, 640
HhaI GCGC 2 cut(s) 152, 577
Hin1II CATG 4 cut(s) 262, 583, 778, 1077
Hin6I GCGC 2 cut(s) 150, 575
HinP1I GCGC 2 cut(s) 150, 575
HinfI GANTC 9 cut(s) 567, 608, 619, 744, 788, 989, 1028, 1038, 1070
HpaII CCGG 2 cut(s) 415, 640
HphI GGTGA 8 cut(s) 165, 311, 628, 874, 970, 979, 998, 1072
Hpy166II GTNNAC 2 cut(s) 319, 623
Hpy188I TCNGA 8 cut(s) 63, 215, 461, 589, 743, 823, 846, 1037
Hpy188III TCNNGA 2 cut(s) 580, 1047
Hpy8I GTNNAC 2 cut(s) 319, 623
Hpy99I CGWCG 2 cut(s) 296, 859
HpyAV CCTTC 7 cut(s) 38, 220, 352, 904, 909, 1044, 1051
HpyCH4III ACNGT 4 cut(s) 474, 668, 850, 980
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 774, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
HpyF3I CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1045
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 4 cut(s) 262, 583, 778, 1077
HspAI GCGC 2 cut(s) 150, 575
KroI GCCGGC 1 cut(s) 639
KroNI GCCGGC 1 cut(s) 641
Kzo9I GATC 3 cut(s) 18, 262, 524
LmnI GCTCC 2 cut(s) 207, 344
Lsp1109I GCAGC 2 cut(s) 83, 85
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 20, 264, 526
MboI GATC 3 cut(s) 18, 262, 524
MboII GAAGA 5 cut(s) 361, 508, 572, 641, 877
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 1 cut(s) 583
MlyI GAGTC 6 cut(s) 617, 628, 753, 782, 998, 1022
MmeI TCCRAC 3 cut(s) 432, 612, 801
MroNI GCCGGC 1 cut(s) 639
MseI TTAA 4 cut(s) 399, 812, 921, 1016
MslI CAYNNNNRTG 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 415, 640
MspR9I CCNGG 6 cut(s) 353, 416, 439, 454, 593, 707
MvaI CCWGG 5 cut(s) 353, 439, 454, 593, 707
MvnI CGCG 2 cut(s) 150, 226
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NaeI GCCGGC 1 cut(s) 641
NciI CCSGG 1 cut(s) 416
NdeII GATC 3 cut(s) 18, 262, 524
NgoMIV GCCGGC 1 cut(s) 639
NlaIII CATG 4 cut(s) 262, 583, 778, 1077
NlaIV GGNNCC 2 cut(s) 340, 443
OliI CACNNNNGTG 1 cut(s) 301
PagI TCATGA 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PdiI GCCGGC 1 cut(s) 641
PfeI GAWTC 3 cut(s) 567, 1038, 1070
PflFI GACNNNGTC 4 cut(s) 607, 791, 850, 1031
PflMI CCANNNNNTGG 1 cut(s) 438
PfoI TCCNGGA 2 cut(s) 351, 414
PkrI GCNGC 6 cut(s) 73, 100, 244, 386, 645, 721
PleI GAGTC 6 cut(s) 616, 627, 752, 782, 997, 1022
PpsI GAGTC 6 cut(s) 616, 627, 752, 782, 997, 1022
Ppu21I YACGTR 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 809
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 5 cut(s) 351, 437, 452, 591, 705
PspGI CCWGG 5 cut(s) 351, 437, 452, 591, 705
PspN4I GGNNCC 2 cut(s) 340, 443
PspPI GGNCC 6 cut(s) 355, 442, 703, 709, 739, 1033
PspPPI RGGWCCY 1 cut(s) 442
PsyI GACNNNGTC 4 cut(s) 607, 791, 850, 1031
RsaI GTAC 4 cut(s) 109, 335, 467, 476
RsaNI GTAC 4 cut(s) 108, 334, 466, 475
RseI CAYNNNNRTG 1 cut(s) 301
Rsr2I CGGWCCG 2 cut(s) 739, 1033
RsrII CGGWCCG 2 cut(s) 739, 1033
SacI GAGCTC 1 cut(s) 809
SaqAI TTAA 4 cut(s) 399, 812, 921, 1016
SatI GCNGC 6 cut(s) 72, 99, 243, 385, 644, 720
Sau3AI GATC 3 cut(s) 18, 262, 524
Sau96I GGNCC 6 cut(s) 355, 442, 703, 709, 739, 1033
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 6 cut(s) 617, 628, 753, 782, 998, 1022
ScrFI CCNGG 6 cut(s) 353, 416, 439, 454, 593, 707
SduI GDGCHC 1 cut(s) 809
SexAI ACCWGGT 1 cut(s) 591
SinI GGWCC 5 cut(s) 355, 442, 709, 739, 1033
SmiMI CAYNNNNRTG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 478
Sse9I AATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 809
StyD4I CCNGG 6 cut(s) 351, 414, 437, 452, 591, 705
TaaI ACNGT 4 cut(s) 474, 668, 850, 980
TaiI ACGT 1 cut(s) 480
TaqI TCGA 3 cut(s) 249, 527, 795
TaqII GACCGA 5 cut(s) 620, 727, 781, 1021, 1023
TasI AATT 1 cut(s) 583
TatI WGTACW 1 cut(s) 107
TauI GCSGC 4 cut(s) 245, 387, 646, 722
TfiI GAWTC 3 cut(s) 567, 1038, 1070
Tru1I TTAA 4 cut(s) 399, 812, 921, 1016
Tru9I TTAA 4 cut(s) 399, 812, 921, 1016
TscAI CASTG 3 cut(s) 385, 855, 985
TseI GCWGC 2 cut(s) 71, 98
TspDTI ATGAA 4 cut(s) 334, 596, 740, 923
TspGWI ACGGA 4 cut(s) 22, 280, 355, 483
TspRI CASTG 3 cut(s) 385, 855, 985
Tth111I GACNNNGTC 4 cut(s) 607, 791, 850, 1031
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 5 cut(s) 355, 442, 709, 739, 1033
XagI CCTNNNNNAGG 1 cut(s) 1048
XapI RAATTY 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.