Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000593.1

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

67663 .. 69926

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000593.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgttcttttccaatcgttttcaggcttgttgttttgttctccagagttgggtgtctaagaagtttatgactggaattgtagttcttttccctgttgctgttacttttttcatcacatggtggttcgtccagtttgttgatgggttcttcagtccactctacgagcagcttggcattgagatcttcggacttggatttatcacatccttacttttcgtattctttgttggtgtctttgtttcctcatggatgggtgccactgttttctctcttggagaatggattataaagaaaatgccttttgttaagcatatctactcagcctccaaacaaattagttccgcaatttctccagaccaaaataccacagcttttaaagaggtagcaattatccgtcacccacgtgttggcgaatatgcttttgggtttattacatcaactgttacccttcagaaggtcattgaagatgtattctcatcgtcagtgtctgtagaatattgttgggtatatgggaccaatgatctgccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

176

Amino Acids

20.04

Weight (kDa)

6.71

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	407
AciI	CCGC	1 cut(s)	342
AcuI	CTGAAG	2 cut(s)	133, 434
AcvI	CACGTG	1 cut(s)	404
AdeI	CACNNNGTG	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	49, 407, 454
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AleI	CACNNNNGTG	1 cut(s)	402
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	169, 371
AluI	AGCT	2 cut(s)	169, 371
AlwNI	CAGNNNCTG	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	134, 244
BfmI	CTRYAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	256, 514
BpmI	CTGGAG	2 cut(s)	26, 336
BsaAI	YACGTR	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 407, 454
Bse1I	ACTGG	2 cut(s)	76, 130
BseGI	GGATG	2 cut(s)	203, 255
BseLI	CCNNNNNNNGG	3 cut(s)	49, 407, 454
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	76, 130
BseXI	GCAGC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	3 cut(s)	49, 407, 454
BsmFI	GGGAC	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	180, 520
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	256, 514
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	76, 130
BssMI	GATC	2 cut(s)	180, 520
Bst4CI	ACNGT	2 cut(s)	262, 442
BstBAI	YACGTR	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	57, 319
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	203, 255
BstKTI	GATC	2 cut(s)	183, 523
BstMBI	GATC	2 cut(s)	180, 520
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	203, 255
BtsIMutI	CAGTG	2 cut(s)	258, 489
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	513
CviAII	CATG	2 cut(s)	117, 246
CviJI	RGCY	4 cut(s)	26, 169, 323, 371
CviKI_1	RGCY	4 cut(s)	26, 169, 323, 371
DdeI	CTNAG	2 cut(s)	57, 319
DpnI	GATC	2 cut(s)	182, 522
DpnII	GATC	2 cut(s)	180, 520
DraI	TTTAAA	1 cut(s)	376
DraIII	CACNNNGTG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	513
Eco57I	CTGAAG	2 cut(s)	133, 434
Eco72I	CACGTG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	452
FaeI	CATG	2 cut(s)	120, 249
FaiI	YATR	8 cut(s)	68, 118, 247, 287, 312, 417, 508, 510
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	116, 245
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	190, 262
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	26, 336
Hin1II	CATG	2 cut(s)	120, 249
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	188, 453
Hpy188III	TCNNGA	2 cut(s)	43, 353
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	448, 458
HpyCH4III	ACNGT	2 cut(s)	262, 442
HpyCH4IV	ACGT	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	57, 319
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	120, 249
Kzo9I	GATC	2 cut(s)	180, 520
LpnPI	CCDG	6 cut(s)	8, 56, 57, 105, 143, 366
Lsp1109I	GCAGC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	100, 395, 442
MalI	GATC	2 cut(s)	182, 522
MboI	GATC	2 cut(s)	180, 520
MboII	GAAGA	3 cut(s)	139, 175, 476
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	4 cut(s)	75, 333, 345, 387
MnlI	CCTC	3 cut(s)	253, 334, 373
MseI	TTAA	2 cut(s)	306, 375
MslI	CAYNNNNRTG	1 cut(s)	402
NdeII	GATC	2 cut(s)	180, 520
NlaIII	CATG	2 cut(s)	120, 249
NlaIV	GGNNCC	2 cut(s)	256, 514
NmuCI	GTSAC	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	256, 514
PspPI	GGNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	306, 375
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	180, 520
Sau96I	GGNCC	1 cut(s)	513
SetI	ASST	5 cut(s)	171, 373, 384, 406, 459
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	4 cut(s)	75, 333, 345, 387
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	262, 442
TaiI	ACGT	1 cut(s)	406
TasI	AATT	4 cut(s)	75, 333, 345, 387
Tru1I	TTAA	2 cut(s)	306, 375
Tru9I	TTAA	2 cut(s)	306, 375
TscAI	CASTG	2 cut(s)	265, 489
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	265, 489
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	513
XagI	CCTNNNNNAGG	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.