Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

2103547 .. 2106180

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGCAAGCTAAAGAGTCCACGTCGTCGAGTCCGCTGACCCAAGCAGACTCTGAAGATGTTTCCAGGTCTCTGCCAAGCTCCCCCAACTCCTCCACTCGCAAGGCATGCTATGCAGTGCTTCAGAGTTGGGTCTCCAAGAAATTCATGACTGGATGTATGGTTCTCTTTCCTGTCGCTGTTACGTTCTTCATCACTTGGTGGTTTGTTCAGTTTATAGACGGTTTTTCCAGTCCAATATATGCCAGGCTTGGGGTTAGCATATTTGGCCTAGGATTTGTTACATCCCTACTTTTTATATTCTTGATTGGTATTTTTGCTTCATCATGGATGGGTGAGACAGTTTTCTGGATTGGAGAATGGTTCATAAAACGTTTGCCCTTTATGAAGCACATATACTCGGCCTCTAAACAGATTAGTTCTGCGATCTCTCCAGATCAAAAGACCACTGCTTTTAAAGAGGTTGCAATTATCCGTCATCCTCGACTTGGTGAATATGCATTTGGTTTTATAACATCATCTGTAACCCTTCAGGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

181

Amino Acids

20.11

Weight (kDa)

9.27

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AciI	CCGC	1 cut(s)	35
AclI	AACGTT	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	3 cut(s)	75, 107, 515
AdeI	CACNNNGTG	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	252, 488
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	65, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	2 cut(s)	11, 81
AluI	AGCT	2 cut(s)	11, 81
Alw26I	GTCTC	3 cut(s)	75, 139, 332
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	268, 402
ApoI	RAATTY	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	347, 503
AvrII	CCTAGG	1 cut(s)	271
BarI	GAAGNNNNNNTAC	4 cut(s)	304, 336, 380, 412
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	67, 247
BcoDI	GTCTC	3 cut(s)	75, 139, 332
BfaI	CTAG	1 cut(s)	272
BlnI	CCTAGG	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	67, 247
BmgBI	CACGTC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	67, 247
BpmI	CTGGAG	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	75, 139
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 488
Bse1I	ACTGG	2 cut(s)	157, 231
BseBI	CCWGG	2 cut(s)	67, 247
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	4 cut(s)	161, 284, 336, 478
BseLI	CCNNNNNNNGG	2 cut(s)	252, 488
BseNI	ACTGG	2 cut(s)	157, 231
BseRI	GAGGAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	270, 404
BslI	CCNNNNNNNGG	2 cut(s)	252, 488
BsmAI	GTCTC	3 cut(s)	75, 139, 332
BsnI	GGCC	2 cut(s)	270, 404
Bso31I	GGTCTC	2 cut(s)	75, 139
Bsp143I	GATC	2 cut(s)	426, 436
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	270, 404
BspHI	TCATGA	1 cut(s)	147
BspTNI	GGTCTC	2 cut(s)	75, 139
BsrI	ACTGG	2 cut(s)	157, 231
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	426, 436
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	67, 247
Bst4CI	ACNGT	2 cut(s)	224, 343
BstAPI	GCANNNNNTGC	2 cut(s)	108, 113
BstC8I	GCNNGC	2 cut(s)	9, 109
BstF5I	GGATG	4 cut(s)	161, 284, 336, 478
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	429, 439
BstMAI	GTCTC	3 cut(s)	75, 139, 332
BstMBI	GATC	2 cut(s)	426, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 113, 267
BstNI	CCWGG	2 cut(s)	67, 247
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	65, 245
BsuRI	GGCC	2 cut(s)	270, 404
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	161, 284, 336, 478
BtsI	GCAGTG	2 cut(s)	123, 447
BtsIMutI	CAGTG	2 cut(s)	123, 447
Cac8I	GCNNGC	2 cut(s)	9, 109
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	3 cut(s)	108, 148, 327
CviJI	RGCY	5 cut(s)	11, 81, 250, 270, 404
CviKI_1	RGCY	5 cut(s)	11, 81, 250, 270, 404
DpnI	GATC	2 cut(s)	428, 438
DpnII	GATC	2 cut(s)	426, 436
DraI	TTTAAA	1 cut(s)	457
DraIII	CACNNNGTG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	271
Eco31I	GGTCTC	2 cut(s)	75, 139
Eco57I	CTGAAG	3 cut(s)	75, 107, 515
EcoRII	CCWGG	2 cut(s)	65, 245
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	111, 151, 330
FatI	CATG	3 cut(s)	107, 147, 326
FokI	GGATG	4 cut(s)	168, 271, 343, 465
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	270, 404
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	111, 151, 330
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	17, 31, 50
HphI	GGTGA	2 cut(s)	347, 503
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	55, 126
Hpy188III	TCNNGA	4 cut(s)	148, 304, 349, 434
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	224, 343
HpyCH4IV	ACGT	3 cut(s)	23, 185, 373
HpyCH4V	TGCA	3 cut(s)	116, 467, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 113, 267
HpySE526I	ACGT	3 cut(s)	23, 185, 373
Hsp92II	CATG	3 cut(s)	111, 151, 330
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	426, 436
LmnI	GCTCC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	3 cut(s)	23, 185, 373
MaeIII	GTNAC	3 cut(s)	181, 280, 523
MalI	GATC	2 cut(s)	428, 438
MboI	GATC	2 cut(s)	426, 436
MboII	GAAGA	2 cut(s)	68, 181
MluCI	AATT	2 cut(s)	143, 468
MlyI	GAGTC	3 cut(s)	26, 40, 44
MnlI	CCTC	4 cut(s)	103, 415, 454, 492
Mph1103I	ATGCAT	1 cut(s)	502
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	67, 247
MvaI	CCWGG	2 cut(s)	67, 247
MwoI	GCNNNNNNNGC	3 cut(s)	108, 113, 267
NdeII	GATC	2 cut(s)	426, 436
NlaIII	CATG	3 cut(s)	111, 151, 330
NmeAIII	GCCGAG	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	147
PleI	GAGTC	3 cut(s)	25, 39, 44
PpsI	GAGTC	3 cut(s)	25, 39, 44
PsiI	TTATAA	1 cut(s)	512
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	65, 245
PspGI	CCWGG	2 cut(s)	65, 245
PstNI	CAGNNNCTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	426, 436
SchI	GAGTC	3 cut(s)	26, 40, 44
ScrFI	CCNGG	2 cut(s)	67, 247
SetI	ASST	8 cut(s)	13, 26, 71, 83, 188, 376, 465, 537
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	143, 468
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	65, 245
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	224, 343
TaiI	ACGT	3 cut(s)	26, 188, 376
TaqI	TCGA	2 cut(s)	29, 484
TasI	AATT	2 cut(s)	143, 468
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	123, 454
TspDTI	ATGAA	5 cut(s)	136, 181, 312, 355, 401
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	123, 454
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	111
XmaJI	CCTAGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.