FvH4_1g23950

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002755
Physical Location & Seq
Reverse (-)
15796294 .. 15801269
4976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23950.t1

Sequence Viewer

Length: 774 bp
ATGGCGGAGGAAACGGAGTCGACGTCGATTCCACTGAGTCAAGCTGAGAACGGCTGTCCCGATCCCGAAGACCCAGCCAAGTCACCCCCACCCTCTCCCAACTCCTCCACCCGTAAGGCTTGTTGTTTTGTTCTCCAGAGTTGGGTGTCTAAGAAGTTTATGACCGGAATTGTGGTTCTTTTTCCTGTTGCTGTTACGTTCTTTGTTACATGGTGGTTCATCCAGTTTGTTGATGGGTTCTTCAGTCCGCTCTACGAGCAGCTTGGCATTGAGATCTTCGGACTTGGATTTGTCACATCCTTACTTTTTGTATTCTTTGTTGGTGTCTTTGTTTCGTCATGGATGGGTGCCACTGTTTTCTCTCTTGGAGAATGGATTATAAAGAAAATGCCTTTTGTTAAGCATATCTACTCCGCCTCCAAACAAATTAGTGCAGCAATTTCTCCAGACCAAAATACAACAGCTTTTAAGGAGGTAGCAATTATCCGTCATCCACGTGTTGGCGAATATGCTTTTGGGTTTATCACATCAACCGTTACCCTTCAGAGAGATAACGAAGATGAAGAGTTGTGTAGTGTTTTTGTCCCAACGAATCATCTATATATAGGTGATATATTTCTTGTTAACTCCAAGGATATCATAAGACCAAATCTGTCTATCCGAGAAGGCATAGAGATCATTGTTTCCGGGGGTATGACGATGCCCCAAATCATTTCTCCTCAAGAAAGGGTTACCCAACAGAATGATAAAATTCCTTTAAACAGAATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

258

Amino Acids

28.75

Weight (kDa)

5.29

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 99 - 199 1.4e-27 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AatII GACGTC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 20
AciI CCGC 3 cut(s) 5, 248, 414
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 2 cut(s) 226, 527
AcvI CACGTG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 142, 500
AflIII ACRYGT 1 cut(s) 496
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 44, 262, 464
AluI AGCT 3 cut(s) 44, 262, 464
AlwI GGATC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 259, 434
ApoI RAATTY 1 cut(s) 750
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 2 cut(s) 75, 620
BanI GGYRCC 1 cut(s) 347
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 271, 446
BccI CCATC 2 cut(s) 227, 337
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 688
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 260, 435
BlsI GCNGC 2 cut(s) 261, 436
Bme1390I CCNGG 1 cut(s) 688
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 2 cut(s) 119, 429
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 688
BsaAI YACGTR 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 630, 687
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 500
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 630, 687
BseGI GGATG 4 cut(s) 219, 296, 348, 490
BseLI CCNNNNNNNGG 2 cut(s) 142, 500
BseMII CTCAG 2 cut(s) 26, 36
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 94, 708
BseXI GCAGC 2 cut(s) 271, 446
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 165, 687
BslFI GGGAC 2 cut(s) 42, 569
BslI CCNNNNNNNGG 2 cut(s) 142, 500
BsmFI GGGAC 2 cut(s) 42, 569
Bsp143I GATC 3 cut(s) 61, 273, 675
BspACI CCGC 3 cut(s) 5, 248, 414
BspCNI CTCAG 2 cut(s) 27, 37
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 630, 687
BssMI GATC 3 cut(s) 61, 273, 675
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 355, 535
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 497
BstDEI CTNAG 3 cut(s) 35, 45, 150
BstEII GGTNACC 1 cut(s) 730
BstF5I GGATG 4 cut(s) 219, 296, 348, 490
BstKTI GATC 3 cut(s) 64, 276, 678
BstMBI GATC 3 cut(s) 61, 273, 675
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstPI GGTNACC 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 271, 446
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 4 cut(s) 219, 296, 348, 490
BtsIMutI CAGTG 2 cut(s) 32, 351
CviAII CATG 2 cut(s) 210, 339
CviJI RGCY 6 cut(s) 44, 54, 77, 119, 262, 464
CviKI_1 RGCY 6 cut(s) 44, 54, 77, 119, 262, 464
DdeI CTNAG 3 cut(s) 35, 45, 150
DpnI GATC 3 cut(s) 63, 275, 677
DpnII GATC 3 cut(s) 61, 273, 675
DraI TTTAAA 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 2 cut(s) 20, 403
Eco130I CCWWGG 1 cut(s) 630
Eco32I GATATC 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 226, 527
Eco72I CACGTG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 730
EcoO65I GGTNACC 1 cut(s) 730
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 2 cut(s) 213, 342
FaqI GGGAC 2 cut(s) 42, 569
FatI CATG 2 cut(s) 209, 338
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 260, 435
FokI GGATG 4 cut(s) 206, 283, 355, 477
Fsp4HI GCNGC 2 cut(s) 260, 435
GluI GCNGC 2 cut(s) 260, 435
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 119, 429
HapII CCGG 2 cut(s) 165, 687
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 213, 342
HincII GTYRAC 2 cut(s) 21, 625
HindII GTYRAC 2 cut(s) 21, 625
HinfI GANTC 4 cut(s) 17, 28, 37, 592
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 2 cut(s) 165, 687
HphI GGTGA 2 cut(s) 75, 620
Hpy166II GTNNAC 2 cut(s) 21, 625
Hpy188I TCNGA 3 cut(s) 281, 546, 662
Hpy188III TCNNGA 5 cut(s) 59, 65, 136, 446, 722
Hpy8I GTNNAC 2 cut(s) 21, 625
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 2 cut(s) 551, 659
HpyCH4III ACNGT 2 cut(s) 355, 535
HpyCH4IV ACGT 3 cut(s) 23, 197, 496
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 3 cut(s) 35, 45, 150
HpySE526I ACGT 3 cut(s) 23, 197, 496
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 213, 342
KspAI GTTAAC 1 cut(s) 625
Kzo9I GATC 3 cut(s) 61, 273, 675
LpnPI CCDG 7 cut(s) 87, 149, 178, 198, 236, 459, 700
Lsp1109I GCAGC 2 cut(s) 271, 446
LweI GCATC 1 cut(s) 690
MaeII ACGT 3 cut(s) 23, 197, 496
MaeIII GTNAC 6 cut(s) 81, 193, 205, 292, 535, 730
MalI GATC 3 cut(s) 63, 275, 677
MbiI CCGCTC 1 cut(s) 250
MboI GATC 3 cut(s) 61, 273, 675
MboII GAAGA 5 cut(s) 80, 232, 268, 569, 575
MflI RGATCY 1 cut(s) 273
MluCI AATT 5 cut(s) 168, 426, 438, 480, 750
MlyI GAGTC 2 cut(s) 26, 46
MnlI CCTC 5 cut(s) 103, 115, 427, 466, 729
MseI TTAA 4 cut(s) 399, 468, 624, 758
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 2 cut(s) 165, 687
MspR9I CCNGG 1 cut(s) 688
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 688
NdeII GATC 3 cut(s) 61, 273, 675
NlaIII CATG 2 cut(s) 213, 342
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 81, 292
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 57
PfeI GAWTC 2 cut(s) 28, 592
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 2 cut(s) 261, 436
PleI GAGTC 2 cut(s) 25, 45
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 2 cut(s) 25, 45
Ppu21I YACGTR 1 cut(s) 497
PsiI TTATAA 1 cut(s) 380
PspCI CACGTG 1 cut(s) 497
PspEI GGTNACC 1 cut(s) 730
PspFI CCCAGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 349
PsuI RGATCY 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 495
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 4 cut(s) 399, 468, 624, 758
SatI GCNGC 2 cut(s) 260, 435
Sau3AI GATC 3 cut(s) 61, 273, 675
SchI GAGTC 2 cut(s) 26, 46
ScrFI CCNGG 1 cut(s) 688
SetI ASST 8 cut(s) 26, 46, 200, 264, 466, 477, 499, 610
SfaNI GCATC 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
Sse9I AATT 5 cut(s) 168, 426, 438, 480, 750
SsiI CCGC 3 cut(s) 5, 248, 414
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 355, 535
TaiI ACGT 3 cut(s) 26, 200, 499
TaqI TCGA 2 cut(s) 20, 26
TasI AATT 5 cut(s) 168, 426, 438, 480, 750
TfiI GAWTC 2 cut(s) 28, 592
Tru1I TTAA 4 cut(s) 399, 468, 624, 758
Tru9I TTAA 4 cut(s) 399, 468, 624, 758
TscAI CASTG 2 cut(s) 39, 358
TseFI GTSAC 2 cut(s) 81, 292
TseI GCWGC 2 cut(s) 259, 434
Tsp45I GTSAC 2 cut(s) 81, 292
TspDTI ATGAA 2 cut(s) 208, 576
TspGWI ACGGA 2 cut(s) 29, 476
TspRI CASTG 2 cut(s) 39, 358
Van91I CCANNNNNTGG 1 cut(s) 500
XapI RAATTY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 20
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.