Rh6DG194600

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002755
Physical Location & Seq
Forward (+)
34809043 .. 34818001
8959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG194600.1

Sequence Viewer

Length: 555 bp
ATGGCGGAAGCTAAAGAGTCAACGTCCAGTCCACTCACTCAACCCGATCCTGAAGATTTCCCCAAGTCTCCGCCCAGCTCCCCCAACTCCTCCACTCGCAAGGCTTGCTATGCAGTGCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTATGGTTCTCTTTCCTGTTGCTGTTACATTCTTCATCACTTGGTGGTTTATTCAGTTCGTGGATGGTTTCTTCAGTCCATTATATGCGAGGCTTGGTATTAATATATTTGGCCTAGGGTTTGTTACATCCCTAATTTTTATGTTCTTAGTCGGTGTATTTGCTTCATCATGGATGGGTGCAACTGTTTTCTCGGTTGGAGAGTGGTTCATAAAACGAATGCCCTTTATGAAGCACATATACTCAGCATCCAAACAAATTAGTGCTGCAATTTCCCCAGACCAAAATACCACCGCTTTTAAAGAGGTTGCAATTATCCGTCATCCTAGGATTGGTGAATACGCGTTCGGTTTTATCACATCATCTGTAATCCTTCAGGTACATGATATTTTATTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

8.95

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 94 - 174 3.1e-21 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 497
AciI CCGC 3 cut(s) 5, 71, 447
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 3 cut(s) 72, 211, 512
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 127, 485
AflIII ACRYGT 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 11, 78
AluI AGCT 2 cut(s) 11, 78
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 72, 136
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 419
AseI ATTAAT 1 cut(s) 255
AspA2I CCTAGG 2 cut(s) 268, 479
AsuHPI GGTGA 1 cut(s) 500
AvrII CCTAGG 2 cut(s) 268, 479
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 406
BccI CCATC 2 cut(s) 212, 322
BcoDI GTCTC 2 cut(s) 72, 136
BfaI CTAG 2 cut(s) 269, 480
BisI GCNGC 1 cut(s) 420
BlnI CCTAGG 2 cut(s) 268, 479
BlsI GCNGC 1 cut(s) 421
BmsI GCATC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 268, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 485
Bse1I ACTGG 2 cut(s) 27, 154
BseDI CCNNGG 2 cut(s) 268, 479
BseGI GGATG 6 cut(s) 158, 223, 281, 333, 401, 475
BseLI CCNNNNNNNGG 2 cut(s) 127, 485
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 27, 154
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 127, 485
BsmAI GTCTC 2 cut(s) 72, 136
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 3 cut(s) 5, 71, 447
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 410
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 144
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 27, 154
BssECI CCNNGG 2 cut(s) 268, 479
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 268, 479
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 301, 397
BstF5I GGATG 6 cut(s) 158, 223, 281, 333, 401, 475
BstFNI CGCG 1 cut(s) 497
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 72, 136
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 105, 110
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 6 cut(s) 158, 223, 281, 333, 401, 475
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 144
Csp6I GTAC 1 cut(s) 533
CviAII CATG 3 cut(s) 145, 324, 536
CviJI RGCY 5 cut(s) 11, 78, 104, 247, 267
CviKI_1 RGCY 5 cut(s) 11, 78, 104, 247, 267
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 2 cut(s) 301, 397
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 198
EciI GGCGGA 2 cut(s) 20, 60
Eco130I CCWWGG 2 cut(s) 268, 479
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 72, 211, 512
EcoT14I CCWWGG 2 cut(s) 268, 479
ErhI CCWWGG 2 cut(s) 268, 479
FaeI CATG 3 cut(s) 148, 327, 539
FatI CATG 3 cut(s) 144, 323, 535
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 6 cut(s) 165, 230, 268, 340, 388, 462
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 2 cut(s) 269, 480
GluI GCNGC 1 cut(s) 420
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 3 cut(s) 148, 327, 539
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 21, 32
Hpy188III TCNNGA 3 cut(s) 50, 121, 145
Hpy8I GTNNAC 2 cut(s) 21, 32
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 113, 335, 422, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 110
HpyF3I CTNAG 2 cut(s) 301, 397
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 3 cut(s) 148, 327, 539
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 83, 123
LpnPI CCDG 8 cut(s) 40, 63, 88, 134, 135, 183, 444, 515
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 410
MaeI CTAG 2 cut(s) 269, 480
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 178, 277
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 65, 178, 217
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 4 cut(s) 288, 411, 423, 465
MluI ACGCGT 1 cut(s) 495
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 100, 237, 451
MseI TTAA 2 cut(s) 255, 453
Mva1269I GAATGC 1 cut(s) 378
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 105, 110
NdeII GATC 1 cut(s) 46
NlaIII CATG 3 cut(s) 148, 327, 539
PagI TCATGA 1 cut(s) 144
PctI GAATGC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 74
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
SaqAI TTAA 2 cut(s) 255, 453
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 13, 26, 80, 462, 534
SfaNI GCATC 1 cut(s) 410
Sse9I AATT 4 cut(s) 288, 411, 423, 465
SsiI CCGC 3 cut(s) 5, 71, 447
SspMI CTAG 2 cut(s) 269, 480
StyI CCWWGG 2 cut(s) 268, 479
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 26
TasI AATT 4 cut(s) 288, 411, 423, 465
Tru1I TTAA 2 cut(s) 255, 453
Tru9I TTAA 2 cut(s) 255, 453
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 5 cut(s) 133, 178, 309, 352, 398
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 120
VspI ATTAAT 1 cut(s) 255
XmaJI CCTAGG 2 cut(s) 268, 479
XspI CTAG 2 cut(s) 269, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.