Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

16228189 .. 16231254

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGAAGGAAAAGAAGCTACGACGAGTTCGCTGAGTCAAGGACTCACTCCTCACCAAGACCCCGACGATGCTCCCAAGTCTCCTCCCAACTCTCCAAATTCTTCTACTCGCAAGGCTTGTTATGGGGTTCTACAGAGTTGGGTGTCTAAGAAGTTTATGACTGGATTTGTCGTACTCTTTCCTGTAGCTGTTACATTCCTCATCACTTGGTGGTTTATCCAGTTCGTTGATGGTTTCTTCAGTCCGATATACGAGAACCTTGGTGTTGACATATTTGGACTTGGGTTCATTACATCTGTACTTTTCACTTTCTTTGTCGGAATATTTGCTTCGTCGTGGTTGGGTTCTACAGTTTTCTGGCTTGGGGAGCAGTTTATAAGGCGAATGCCCTTTGTCAAGCACATATATTCAGCTTCTAAGCAAATTAGCACTGCTATTTCTCCAGACCAAAACACTACTGCCTTTAAAGAGGTAGCAATCATCCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGGCCAAATTTATCGATCCGAGAAGGAATAGAGATCATAGTATCGGTGGGGATGACAATGCCGCAAGTTATATCTCATGTGGACAGGACAACAAACAGAACTCCTCACCAACACAGTCTCAGGGTTCCTCTCAACAGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

261

Amino Acids

29.22

Weight (kDa)

6.23

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	66 - 166	2.3e-27	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AciI	CCGC	2 cut(s)	5, 704
AclWI	GGATC	1 cut(s)	652
AcsI	RAATTY	2 cut(s)	100, 649
AcuI	CTGAAG	2 cut(s)	226, 527
AdeI	CACNNNGTG	1 cut(s)	213
AfaI	GTAC	4 cut(s)	177, 303, 585, 602
AfiI	CCNNNNNNNGG	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	3 cut(s)	20, 191, 416
AluI	AGCT	3 cut(s)	20, 191, 416
Alw26I	GTCTC	2 cut(s)	87, 764
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	1 cut(s)	644
ApoI	RAATTY	2 cut(s)	100, 649
AsuHPI	GGTGA	6 cut(s)	47, 482, 515, 547, 634, 740
BccI	CCATC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	87, 764
BfmI	CTRYAG	3 cut(s)	134, 186, 351
BisI	GCNGC	1 cut(s)	704
BlsI	GCNGC	1 cut(s)	705
BmiI	GGNNCC	1 cut(s)	768
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	262, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	169, 223
BseCI	ATCGAT	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	262, 553
BseGI	GGATG	2 cut(s)	483, 699
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	26, 775
BseNI	ACTGG	2 cut(s)	169, 223
BseRI	GAGGAG	3 cut(s)	42, 75, 735
BshFI	GGCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	87, 764
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	657, 675
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	2 cut(s)	5, 704
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	27, 774
BspDI	ATCGAT	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	169, 223
BssECI	CCNNGG	2 cut(s)	262, 553
BssMI	GATC	2 cut(s)	657, 675
BssT1I	CCWWGG	2 cut(s)	262, 553
Bst4CI	ACNGT	2 cut(s)	355, 758
Bst6I	CTCTTC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	35, 150, 420, 761
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	2 cut(s)	483, 699
BstKTI	GATC	2 cut(s)	660, 678
BstMAI	GTCTC	2 cut(s)	87, 764
BstMBI	GATC	2 cut(s)	657, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstSFI	CTRYAG	3 cut(s)	134, 186, 351
Bsu15I	ATCGAT	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	646
BsuTUI	ATCGAT	1 cut(s)	656
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	483, 699
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	656
Csp6I	GTAC	4 cut(s)	176, 302, 584, 601
CviAII	CATG	2 cut(s)	554, 719
CviJI	RGCY	6 cut(s)	20, 119, 191, 364, 416, 646
CviKI_1	RGCY	6 cut(s)	20, 119, 191, 364, 416, 646
CviQI	GTAC	4 cut(s)	176, 302, 584, 601
DdeI	CTNAG	4 cut(s)	35, 150, 420, 761
DpnI	GATC	2 cut(s)	659, 677
DpnII	GATC	2 cut(s)	657, 675
DraI	TTTAAA	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	262, 553
Eco57I	CTGAAG	2 cut(s)	226, 527
EcoT14I	CCWWGG	2 cut(s)	262, 553
ErhI	CCWWGG	2 cut(s)	262, 553
FaeI	CATG	2 cut(s)	557, 722
FatI	CATG	2 cut(s)	553, 718
Fnu4HI	GCNGC	1 cut(s)	704
FokI	GGATG	2 cut(s)	470, 706
Fsp4HI	GCNGC	1 cut(s)	704
GluI	GCNGC	1 cut(s)	704
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	557, 722
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	37, 45, 592
HphI	GGTGA	6 cut(s)	47, 482, 515, 547, 634, 740
Hpy166II	GTNNAC	2 cut(s)	271, 724
Hpy188I	TCNGA	4 cut(s)	249, 323, 546, 662
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	2 cut(s)	271, 724
Hpy99I	CGWCG	3 cut(s)	28, 71, 340
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	2 cut(s)	355, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	4 cut(s)	35, 150, 420, 761
Hsp92II	CATG	2 cut(s)	557, 722
Kzo9I	GATC	2 cut(s)	657, 675
LmnI	GCTCC	2 cut(s)	79, 370
LpnPI	CCDG	8 cut(s)	150, 198, 236, 346, 459, 605, 712, 748
LweI	GCATC	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	193, 488, 535
MalI	GATC	2 cut(s)	659, 677
MboI	GATC	2 cut(s)	657, 675
MboII	GAAGA	5 cut(s)	96, 232, 572, 575, 644
MluCI	AATT	3 cut(s)	100, 426, 649
MlyI	GAGTC	2 cut(s)	39, 46
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	7 cut(s)	63, 96, 212, 466, 504, 756, 780
MseI	TTAA	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	2 cut(s)	657, 675
NlaIII	CATG	2 cut(s)	557, 722
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	2 cut(s)	488, 535
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	705
PleI	GAGTC	2 cut(s)	39, 45
PpsI	GAGTC	2 cut(s)	39, 45
PsiI	TTATAA	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	768
RsaI	GTAC	4 cut(s)	177, 303, 585, 602
RsaNI	GTAC	4 cut(s)	176, 302, 584, 601
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	1 cut(s)	704
Sau3AI	GATC	2 cut(s)	657, 675
SchI	GAGTC	2 cut(s)	39, 46
SetI	ASST	5 cut(s)	22, 193, 264, 418, 477
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	3 cut(s)	134, 186, 351
Sse9I	AATT	3 cut(s)	100, 426, 649
SsiI	CCGC	2 cut(s)	5, 704
SspI	AATATT	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	262, 553
TaaI	ACNGT	2 cut(s)	355, 758
TaqI	TCGA	1 cut(s)	656
TasI	AATT	3 cut(s)	100, 426, 649
TatI	WGTACW	2 cut(s)	301, 600
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	488, 535
Tsp45I	GTSAC	2 cut(s)	488, 535
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	100, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.