Rw6G017290

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002755
Physical Location & Seq
Forward (+)
34344983 .. 34352328
7346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017290.1

Sequence Viewer

Length: 744 bp
ATGGCGGAAGCTAAAGAGTCAACGTCCAGTCCACTCACTCAACCCGATCCTGAAGATTTCCCCAAGTCTCCGCCCAGCTCCCCCAACTCCTCCACTCGCAAGGCATGCTATGCAGTGCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTATGGTTCTCTTTCCTGTTGCTGTTACTTTCTTCATCACTTGGTGGTTTATTCAGTTCGTGGATGGTTTCTTCAGTCCATTATATGCAAGGCTTGGTATTAATATATTTGGCCTAGGGTTTGTTACATCCCTAATTTTTATGTTCTTAGTCGGTGTATTTGCTTCATCATGGATGGGTGCAACTGTTTTCTCGGTTGGAGAGTGGTTCATAAAACGAATGCCCTTTATGAAGCACATATACTCAGCATCCAAACAAATTAGTGCTGCAATTTCTCCAGACCAAAATACCACCGCTTTTAAAGAGGTTGCAATTATCCGTCATCCTAGGATTGGTGAATACGCGTTCGGTTTTATCACATCATCTGTAATCCTTCAGCGGGATGATGGAGATGAGGAGCTGTGCAGTGTTTATGTCCCAACAAACCATCTATACATTGGAGATATTTTTTTGGTCAATTCCAAAGAGATCATACGACCGAATTTGTCAATTCGAGAAGGCATAGAGATCATAATATCAGTTGGTATGACAATGCCACAGGTGATTTCTCCAATTGAAAGGGTTCCTCTTAACAGGATGGTATCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

247

Amino Acids

27.68

Weight (kDa)

6.83

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 94 - 194 3.3e-26 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 497
AciI CCGC 4 cut(s) 5, 71, 447, 532
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 3 cut(s) 72, 211, 512
AdeI CACNNNGTG 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 127, 485, 532
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 1 cut(s) 710
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 3 cut(s) 11, 78, 553
AluI AGCT 3 cut(s) 11, 78, 553
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 72, 136
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 634
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 714
AspA2I CCTAGG 2 cut(s) 268, 479
AsuHPI GGTGA 2 cut(s) 500, 706
AvrII CCTAGG 2 cut(s) 268, 479
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 406
BccI CCATC 5 cut(s) 212, 322, 533, 588, 724
BcoDI GTCTC 2 cut(s) 72, 136
BfaI CTAG 2 cut(s) 269, 480
BisI GCNGC 1 cut(s) 420
BlnI CCTAGG 2 cut(s) 268, 479
BlsI GCNGC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 717
BmsI GCATC 1 cut(s) 410
BpmI CTGGAG 2 cut(s) 104, 414
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 268, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 485, 532
Bse1I ACTGG 2 cut(s) 27, 154
BseDI CCNNGG 2 cut(s) 268, 479
BseGI GGATG 8 cut(s) 158, 223, 281, 333, 401, 475, 541, 735
BseLI CCNNNNNNNGG 3 cut(s) 127, 485, 532
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 27, 154
BseRI GAGGAG 2 cut(s) 79, 563
BseXI GCAGC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 577
Bsh1236I CGCG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 127, 485, 532
BsmAI GTCTC 2 cut(s) 72, 136
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 46, 621, 660
BspACI CCGC 4 cut(s) 5, 71, 447, 532
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 410
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 717
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 27, 154
BssECI CCNNGG 2 cut(s) 268, 479
BssMI GATC 3 cut(s) 46, 621, 660
BssT1I CCWWGG 2 cut(s) 268, 479
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 2 cut(s) 105, 110
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 301, 397
BstF5I GGATG 8 cut(s) 158, 223, 281, 333, 401, 475, 541, 735
BstFNI CGCG 1 cut(s) 497
BstKTI GATC 3 cut(s) 49, 624, 663
BstMAI GTCTC 2 cut(s) 72, 136
BstMBI GATC 3 cut(s) 46, 621, 660
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 2 cut(s) 105, 110
BstNSI RCATGY 1 cut(s) 108
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 8 cut(s) 158, 223, 281, 333, 401, 475, 541, 735
BtsI GCAGTG 2 cut(s) 120, 565
BtsIMutI CAGTG 2 cut(s) 120, 565
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 144
CviAII CATG 3 cut(s) 105, 145, 324
CviJI RGCY 5 cut(s) 11, 78, 247, 267, 553
CviKI_1 RGCY 5 cut(s) 11, 78, 247, 267, 553
DdeI CTNAG 2 cut(s) 301, 397
DpnI GATC 3 cut(s) 48, 623, 662
DpnII GATC 3 cut(s) 46, 621, 660
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 198
EciI GGCGGA 2 cut(s) 20, 60
Eco130I CCWWGG 2 cut(s) 268, 479
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 72, 211, 512
EcoT14I CCWWGG 2 cut(s) 268, 479
ErhI CCWWGG 2 cut(s) 268, 479
FaeI CATG 3 cut(s) 108, 148, 327
FaqI GGGAC 1 cut(s) 554
FatI CATG 3 cut(s) 104, 144, 323
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 7 cut(s) 165, 230, 268, 340, 388, 462, 548
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 2 cut(s) 269, 480
GluI GCNGC 1 cut(s) 420
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 104, 414
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 3 cut(s) 108, 148, 327
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 500, 706
Hpy166II GTNNAC 2 cut(s) 21, 32
Hpy188III TCNNGA 5 cut(s) 50, 121, 145, 431, 647
Hpy8I GTNNAC 2 cut(s) 21, 32
HpyAV CCTTC 2 cut(s) 536, 644
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 6 cut(s) 113, 242, 335, 422, 464, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 110
HpyF3I CTNAG 2 cut(s) 301, 397
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 3 cut(s) 108, 148, 327
Kzo9I GATC 3 cut(s) 46, 621, 660
LmnI GCTCC 3 cut(s) 83, 123, 550
LpnPI CCDG 9 cut(s) 40, 63, 88, 134, 135, 183, 444, 677, 712
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 410
MaeI CTAG 2 cut(s) 269, 480
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 178, 277
MalI GATC 3 cut(s) 48, 623, 662
MboI GATC 3 cut(s) 46, 621, 660
MboII GAAGA 3 cut(s) 65, 178, 217
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 8 cut(s) 288, 411, 423, 465, 610, 634, 642, 705
MluI ACGCGT 1 cut(s) 495
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 100, 451, 541, 729
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 3 cut(s) 255, 453, 723
MspA1I CMGCKG 1 cut(s) 532
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 378
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 105, 110
NdeII GATC 3 cut(s) 46, 621, 660
NlaIII CATG 3 cut(s) 108, 148, 327
NlaIV GGNNCC 1 cut(s) 717
NspI RCATGY 1 cut(s) 108
PaeI GCATGC 1 cut(s) 108
PagI TCATGA 1 cut(s) 144
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 714
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 255, 453, 723
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 3 cut(s) 46, 621, 660
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 13, 26, 80, 462, 555, 696
SfaNI GCATC 1 cut(s) 410
SphI GCATGC 1 cut(s) 108
Sse9I AATT 8 cut(s) 288, 411, 423, 465, 610, 634, 642, 705
SsiI CCGC 4 cut(s) 5, 71, 447, 532
SspMI CTAG 2 cut(s) 269, 480
StyI CCWWGG 2 cut(s) 268, 479
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 646
TaqII GACCGA 1 cut(s) 646
TasI AATT 8 cut(s) 288, 411, 423, 465, 610, 634, 642, 705
Tru1I TTAA 3 cut(s) 255, 453, 723
Tru9I TTAA 3 cut(s) 255, 453, 723
TscAI CASTG 2 cut(s) 120, 565
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 5 cut(s) 133, 178, 309, 352, 398
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 120, 565
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 634
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XmaJI CCTAGG 2 cut(s) 268, 479
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 2 cut(s) 269, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.