Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Forward (+)

22205052 .. 22205399

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCGACCCGGAAACCGACAAGGTCTTCACCAGAATCCTGCTCGTCCCTTCCGAGAGCAACGAGCTTTTTGCTCAGGACCAAGGCTTTGTGGACTCTGATGGGTCTGACAATCTGGAAAAGCCTTCTTCTTTCGCTAAAAATCTGACACAGTCCGACGCCCACAATTGCGGCGGCTTCTTTGTCCTAAGGTACTGCGCCGAAACCATTTTTCCGAGGCTCGACTACTCCGCTGACCCGTCGGTGCTAACGACCGGGTGGAGCACGTTCGTGAACCAGAAGAAACTCGTCTCCAACGACTTGTTTGTGTTAACCTACGAGCCGAAAATGGCAGCCTTTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

4.44

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	171, 174, 231
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	194
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	2 cut(s)	11, 256
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcnI	CCSGG	2 cut(s)	11, 256
BcoDI	GTCTC	1 cut(s)	295
BisI	GCNGC	3 cut(s)	172, 175, 333
BlsI	GCNGC	3 cut(s)	173, 176, 334
Bme1390I	CCNGG	2 cut(s)	11, 256
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	11, 256
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	11, 256
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	82, 215
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	82, 215
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	11, 255
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	266
BspACI	CCGC	3 cut(s)	171, 174, 231
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	82, 215
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	75, 188
BstHHI	GCGC	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	295
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	9, 254
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	193
CviJI	RGCY	8 cut(s)	5, 67, 87, 124, 177, 220, 322, 335
CviKI_1	RGCY	8 cut(s)	5, 67, 87, 124, 177, 220, 322, 335
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	75, 188
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	295
FaqI	GGGAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	172, 175, 333
Fsp4HI	GCNGC	3 cut(s)	172, 175, 333
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	172, 175, 333
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	11, 255
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	36, 95
HpaI	GTTAAC	1 cut(s)	312
HpaII	CCGG	2 cut(s)	11, 255
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	94, 274, 312
Hpy188I	TCNGA	6 cut(s)	55, 100, 109, 147, 157, 216
Hpy188III	TCNNGA	4 cut(s)	77, 116, 271, 345
Hpy8I	GTNNAC	3 cut(s)	94, 274, 312
Hpy99I	CGWCG	2 cut(s)	161, 244
HpyAV	CCTTC	2 cut(s)	60, 135
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	75, 188
HpySE526I	ACGT	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	1 cut(s)	198
KspAI	GTTAAC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	7 cut(s)	24, 46, 53, 62, 101, 268, 290
Lsp1109I	GCAGC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	266
MboII	GAAGA	3 cut(s)	19, 120, 292
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	180, 318
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	11, 255
MspR9I	CCNGG	2 cut(s)	11, 256
MunI	CAATTG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	2 cut(s)	11, 256
OliI	CACNNNNGTG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 248, 294
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	2 cut(s)	23, 151
PkrI	GCNGC	3 cut(s)	173, 176, 334
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	79
PsyI	GACNNNGTC	2 cut(s)	23, 151
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	172, 175, 333
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	11, 256
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	5 cut(s)	27, 69, 194, 269, 317
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	171, 174, 231
StyD4I	CCNGG	2 cut(s)	9, 254
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	166
TauI	GCSGC	2 cut(s)	174, 177
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseI	GCWGC	1 cut(s)	332
Tth111I	GACNNNGTC	2 cut(s)	23, 151
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.