Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004679.1

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Forward (+)

44389 .. 49178

Gene Structure 4790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004679.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggcggaagctaaagagtcaacgtccagtccactcactcaacccgatcctgaagatttccccaagtctccgcccagctcccccaactcctccactcgcaaggcatgctatgcagtgctccagagttgggtctcaaagaagttcatgactggatgtatggttctctttcctgttgctgttactttcttcatcacttggtggtttattcagttcgtggatggtttcttcagtccattatatgcgaggcttggtattaatatatttggcctagggtttgttacatccctaatttttatgttcttagtcggtgtatttgcttcatcatggatgggtgcaactgttttctcggttggagagtggttcataaaacgaatgccctttatgaagcacatatactcagcatccaaacaaattagtgctgcaatttctccaggtaattactttaattttaaatttttgaaccacttttacctacttggagaatactttacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

164

Amino Acids

18.6

Weight (kDa)

9.15

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 71
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	72, 211
AdeI	CACNNNGTG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	430
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	2 cut(s)	11, 78
AluI	AGCT	2 cut(s)	11, 78
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	72, 136
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	452
AseI	ATTAAT	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	212, 322
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	72, 136
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	420
BlnI	CCTAGG	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	104, 414
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	27, 154
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	5 cut(s)	158, 223, 281, 333, 401
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	27, 154
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	72, 136
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	5, 71
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	27, 154
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	2 cut(s)	105, 110
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	301, 397
BstF5I	GGATG	5 cut(s)	158, 223, 281, 333, 401
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	72, 136
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 110
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	5 cut(s)	158, 223, 281, 333, 401
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	144
CviAII	CATG	3 cut(s)	105, 145, 324
CviJI	RGCY	4 cut(s)	11, 78, 247, 267
CviKI_1	RGCY	4 cut(s)	11, 78, 247, 267
DdeI	CTNAG	2 cut(s)	301, 397
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	451
DraIII	CACNNNGTG	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	20, 60
Eco130I	CCWWGG	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	72, 211
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	3 cut(s)	108, 148, 327
FatI	CATG	3 cut(s)	104, 144, 323
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	5 cut(s)	165, 230, 268, 340, 388
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	104, 414
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	108, 148, 327
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	21, 32
Hpy188III	TCNNGA	3 cut(s)	50, 121, 145
Hpy8I	GTNNAC	2 cut(s)	21, 32
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	113, 335, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 110
HpyF3I	CTNAG	2 cut(s)	301, 397
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	108, 148, 327
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	83, 123
LpnPI	CCDG	8 cut(s)	40, 63, 88, 134, 135, 183, 417, 444
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	178, 277
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	65, 178, 217
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	6 cut(s)	288, 411, 423, 436, 445, 452
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	2 cut(s)	100, 237
MseI	TTAA	3 cut(s)	255, 444, 450
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	105, 110
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	108, 148, 327
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	452, 484
SaqAI	TTAA	3 cut(s)	255, 444, 450
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	5 cut(s)	13, 26, 80, 436, 474
SfaNI	GCATC	1 cut(s)	410
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	6 cut(s)	288, 411, 423, 436, 445, 452
SsiI	CCGC	2 cut(s)	5, 71
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	26
TasI	AATT	6 cut(s)	288, 411, 423, 436, 445, 452
Tru1I	TTAA	3 cut(s)	255, 444, 450
Tru9I	TTAA	3 cut(s)	255, 444, 450
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	5 cut(s)	133, 178, 309, 352, 398
TspRI	CASTG	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	108
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.