Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

69495889 .. 69497442

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG515600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTCGGTTCAGCGCCAATCGAGCTCCGGCTCCGACGGATCTACTGTGGATGACAAGAAGAGGAAGAAGATGCAGTCCAATCGCGAATCGGCCCGGCGATCGCGGATGAAGAAGCAGAAGCACGTGGAGGAGCTGACGGTGGAGATCAGCCGGCTCCAGATCTCGAACAGCCAAATCCGGCAGAGCGTCGACGCCAAGGACAAGGCCTACAGCGAGGTGGAGGCCTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTGACTGATCGACTTCGCTACTTGGAGTCGATTGAACAGACATTTGTGGAGTTCAGCGGCGTCTTCGATGAGGACATCAACGACATGGCCGAGATGCAGGACTCTCTGCTCAATCCGTGGCAGCTTCCTTACTCGACTCAGCCGATCACCGCTTCTTCTGCTGATGTGTTTCTCGATTGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

148

Amino Acids

17.11

Weight (kDa)

5.14

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	18 - 66	4.9e-08	Basic region leucine zipper
bZIP_1	PF00170	19 - 73	3e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	2 cut(s)	87, 106
AciI	CCGC	3 cut(s)	106, 318, 411
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	348, 440
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	2 cut(s)	195, 321
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	27, 136, 262, 385
AluI	AGCT	4 cut(s)	27, 136, 262, 385
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	5 cut(s)	93, 207, 225, 348, 440
ApeKI	GCWGC	1 cut(s)	382
AsiSI	GCGATCGC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	29, 250
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	2 cut(s)	319, 383
BlsI	GCNGC	2 cut(s)	320, 384
Bme1390I	CCNGG	2 cut(s)	97, 229
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	34, 158
BmrFI	CCNGG	2 cut(s)	97, 229
BmsI	GCATC	2 cut(s)	63, 345
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	195, 321
BsaJI	CCNNGG	2 cut(s)	198, 377
Bse118I	RCCGGY	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	198, 377
BseGI	GGATG	2 cut(s)	58, 114
BseMII	CTCAG	2 cut(s)	263, 413
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	87, 106
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	5 cut(s)	95, 209, 227, 350, 442
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	30, 97, 154, 181
BsnI	GGCC	5 cut(s)	95, 209, 227, 350, 442
Bsp1286I	GDGCHC	2 cut(s)	29, 250
Bsp143I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	3 cut(s)	106, 318, 411
BspANI	GGCC	5 cut(s)	95, 209, 227, 350, 442
BspCNI	CTCAG	2 cut(s)	262, 412
BspFNI	CGCG	2 cut(s)	87, 106
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	34, 158
BspPI	GGATC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	198, 377
BssMI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BssNI	GRCGYC	2 cut(s)	195, 321
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	49, 142
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	195, 321
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	249, 399
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	58, 114
BstFNI	CGCG	2 cut(s)	87, 106
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	6 cut(s)	44, 104, 150, 165, 271, 408
BstMBI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 419
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	95, 227
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	87, 106
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	41, 162
BstYI	RGATCY	2 cut(s)	41, 162
BsuRI	GGCC	5 cut(s)	95, 209, 227, 350, 442
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	58, 114
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	3 cut(s)	178, 203, 310
CviAII	CATG	2 cut(s)	241, 346
DdeI	CTNAG	2 cut(s)	249, 399
DpnI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
DpnII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
EaeI	YGGCCR	2 cut(s)	348, 440
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	2 cut(s)	209, 227
Eco24I	GRGCYC	2 cut(s)	29, 250
Eco53kI	GAGCTC	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	29, 250
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	244, 349
FaiI	YATR	3 cut(s)	242, 347, 445
FatI	CATG	2 cut(s)	240, 345
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	319, 383
FokI	GGATG	2 cut(s)	65, 121
FriOI	GRGCYC	2 cut(s)	29, 250
Fsp4HI	GCNGC	2 cut(s)	319, 383
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	319, 383
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	5 cut(s)	95, 209, 227, 350, 442
HapII	CCGG	4 cut(s)	30, 97, 154, 181
HgaI	GACGC	3 cut(s)	178, 203, 310
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	2 cut(s)	195, 321
Hin1II	CATG	2 cut(s)	244, 349
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	89, 287, 362, 397
HpaII	CCGG	4 cut(s)	30, 97, 154, 181
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	6 cut(s)	86, 160, 166, 241, 251, 434
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	10, 41, 194, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	49, 142
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	76, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 419
HpyF3I	CTNAG	2 cut(s)	249, 399
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	195, 321
Hsp92II	CATG	2 cut(s)	244, 349
HspAI	GCGC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
LmnI	GCTCC	5 cut(s)	32, 38, 133, 162, 259
LpnPI	CCDG	9 cut(s)	43, 110, 167, 173, 194, 214, 236, 241, 344
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	63, 345
MaeII	ACGT	1 cut(s)	126
MalI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
MboI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
MboII	GAAGA	6 cut(s)	73, 79, 82, 124, 316, 408
MflI	RGATCY	2 cut(s)	41, 162
MhlI	GDGCHC	2 cut(s)	29, 250
MlsI	TGGCCA	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	3 cut(s)	296, 356, 391
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	6 cut(s)	57, 124, 211, 217, 237, 325
Mox20I	TGGCCA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	442
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	4 cut(s)	30, 97, 154, 181
MspR9I	CCNGG	2 cut(s)	97, 229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	87, 106
MwoI	GCNNNNNNNGC	2 cut(s)	24, 419
NaeI	GCCGGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	244, 349
NlaIV	GGNNCC	2 cut(s)	34, 158
NmeAIII	GCCGAG	1 cut(s)	376
NruI	TCGCGA	1 cut(s)	87
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	2 cut(s)	209, 227
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 401
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	320, 384
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	3 cut(s)	295, 356, 391
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	295, 356, 391
Ppu21I	YACGTR	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	34, 158
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	41, 162
PvuI	CGATCG	1 cut(s)	104
RgaI	GCGATCGC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	319, 383
Sau3AI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	3 cut(s)	296, 356, 391
ScrFI	CCNGG	2 cut(s)	97, 229
SduI	GDGCHC	2 cut(s)	29, 250
SetI	ASST	6 cut(s)	29, 129, 138, 222, 264, 387
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	63, 345
SfcI	CTRYAG	1 cut(s)	211
SgfI	GCGATCGC	1 cut(s)	104
SgrDI	CGTCGACG	1 cut(s)	191
SseBI	AGGCCT	2 cut(s)	209, 227
SsiI	CCGC	3 cut(s)	106, 318, 411
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	2 cut(s)	209, 227
StyD4I	CCNGG	2 cut(s)	95, 227
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	49, 142
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	8 cut(s)	23, 167, 192, 271, 290, 327, 395, 435
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	54, 366
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.