Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

68904519 .. 68906012

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG483400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTCGGTTCAGCGCCAATCGAGCTCCGGCTCCGACGGATCTGTGGTGGATGACAAGAAGAGGAAGAAGATGCAGTCCAATCGCGAATCGGCGCGGCGATCGCGGATGAAGAAGCAGAAGCGTGTGGAGGAGCTGACGGTGGAGATCAGCCGGCTCCAGATCTCTAACAGCCAAATCCGGCAGAGCATCGACGCCAAGGACAAAGCCTACAGCGAGGTGGAGGCCTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTGACTGATCGACTTCGCTACTTGGAGTCGATTGAACAGACATTTGTAGAGTTCAGCGGCGTCTTCGATGAGGACATCAACGACATGGCTGAGATGCATGACTCTCTGCTCAATCCGTGGCAGCTTCCTTACTCCACTCAGCCGATCACCGCTTCTTCTGCTGATATGTTTCTCGATTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

148

Amino Acids

17.18

Weight (kDa)

5.31

Isoelectric Point (pI)

71.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	18 - 66	1.5e-07	Basic region leucine zipper
bZIP_1	PF00170	19 - 73	2.8e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	87, 97, 106
AciI	CCGC	4 cut(s)	97, 106, 318, 411
AclWI	GGATC	1 cut(s)	49
AcyI	GRCGYC	2 cut(s)	195, 321
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	27, 136, 262, 385
AluI	AGCT	4 cut(s)	27, 136, 262, 385
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	225, 440
ApeKI	GCWGC	1 cut(s)	382
AsiSI	GCGATCGC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	18, 97
AsuHPI	GGTGA	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	29, 250
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	98, 319, 383
BlsI	GCNGC	3 cut(s)	99, 320, 384
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	34, 158
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	63, 198, 345
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	195, 321
BsaJI	CCNNGG	2 cut(s)	198, 377
Bse118I	RCCGGY	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	198, 377
BseGI	GGATG	2 cut(s)	58, 114
BseMII	CTCAG	3 cut(s)	263, 342, 413
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	3 cut(s)	87, 97, 106
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	227, 442
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	30, 154, 181
BsnI	GGCC	2 cut(s)	227, 442
Bsp1286I	GDGCHC	2 cut(s)	29, 250
Bsp143I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	4 cut(s)	97, 106, 318, 411
BspANI	GGCC	2 cut(s)	227, 442
BspCNI	CTCAG	3 cut(s)	262, 343, 412
BspFNI	CGCG	3 cut(s)	87, 97, 106
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	34, 158
BspPI	GGATC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	198, 377
BssMI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BssNI	GRCGYC	2 cut(s)	195, 321
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	195, 321
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	4 cut(s)	249, 351, 399, 444
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	58, 114
BstFNI	CGCG	3 cut(s)	87, 97, 106
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 97
BstKTI	GATC	6 cut(s)	44, 104, 150, 165, 271, 408
BstMBI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 103, 419
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	3 cut(s)	87, 97, 106
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	41, 162
BstYI	RGATCY	2 cut(s)	41, 162
BsuRI	GGCC	2 cut(s)	227, 442
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	58, 114
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	2 cut(s)	18, 97
Cfr10I	RCCGGY	1 cut(s)	153
CseI	GACGC	2 cut(s)	203, 310
CviAII	CATG	3 cut(s)	241, 346, 359
DdeI	CTNAG	4 cut(s)	249, 351, 399, 444
DpnI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
DpnII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	29, 250
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	29, 250
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	244, 349, 362
FaiI	YATR	4 cut(s)	242, 347, 360, 428
FatI	CATG	3 cut(s)	240, 345, 358
Fnu4HI	GCNGC	3 cut(s)	98, 319, 383
FokI	GGATG	2 cut(s)	65, 121
FriOI	GRGCYC	2 cut(s)	29, 250
Fsp4HI	GCNGC	3 cut(s)	98, 319, 383
GlaI	GCGC	2 cut(s)	17, 96
GluI	GCNGC	3 cut(s)	98, 319, 383
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	227, 442
HapII	CCGG	3 cut(s)	30, 154, 181
HgaI	GACGC	2 cut(s)	203, 310
HhaI	GCGC	2 cut(s)	18, 97
Hin1I	GRCGYC	2 cut(s)	195, 321
Hin1II	CATG	3 cut(s)	244, 349, 362
Hin6I	GCGC	2 cut(s)	16, 95
HinP1I	GCGC	2 cut(s)	16, 95
HinfI	GANTC	3 cut(s)	89, 287, 362
HpaII	CCGG	3 cut(s)	30, 154, 181
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	86, 160, 241, 251, 434
Hpy99I	CGWCG	3 cut(s)	10, 41, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	76, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 103, 419
HpyF3I	CTNAG	4 cut(s)	249, 351, 399, 444
Hsp92I	GRCGYC	2 cut(s)	195, 321
Hsp92II	CATG	3 cut(s)	244, 349, 362
HspAI	GCGC	2 cut(s)	16, 95
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
LmnI	GCTCC	5 cut(s)	32, 38, 133, 162, 259
LpnPI	CCDG	7 cut(s)	43, 167, 173, 194, 214, 236, 241
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	3 cut(s)	63, 198, 345
MalI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
MboI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
MboII	GAAGA	6 cut(s)	73, 79, 82, 124, 316, 408
MflI	RGATCY	2 cut(s)	41, 162
MhlI	GDGCHC	2 cut(s)	29, 250
MlyI	GAGTC	2 cut(s)	296, 356
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	6 cut(s)	57, 124, 211, 217, 237, 325
Mph1103I	ATGCAT	1 cut(s)	360
MroNI	GCCGGC	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	30, 154, 181
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	3 cut(s)	87, 97, 106
MwoI	GCNNNNNNNGC	3 cut(s)	24, 103, 419
NaeI	GCCGGC	1 cut(s)	155
NdeII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	3 cut(s)	244, 349, 362
NlaIV	GGNNCC	2 cut(s)	34, 158
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	360
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	99, 320, 384
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	295, 356
PpsI	GAGTC	2 cut(s)	295, 356
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	34, 158
PsuI	RGATCY	2 cut(s)	41, 162
PvuI	CGATCG	1 cut(s)	104
RgaI	GCGATCGC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	29
SatI	GCNGC	3 cut(s)	98, 319, 383
Sau3AI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
SchI	GAGTC	2 cut(s)	296, 356
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	2 cut(s)	29, 250
SetI	ASST	5 cut(s)	29, 138, 222, 264, 387
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	63, 198, 345
SfcI	CTRYAG	1 cut(s)	211
SgfI	GCGATCGC	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	227
SsiI	CCGC	4 cut(s)	97, 106, 318, 411
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	6 cut(s)	23, 192, 271, 290, 327, 435
TauI	GCSGC	2 cut(s)	100, 321
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	54, 366
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.