Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Forward (+)

53951877 .. 53952890

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG364200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCATCGGTTCAGCGACAATTGAGCTCCAGCTCCGATGGATCTGTGGTGGATGAAAAGAAGAGGAAGAAGATGCAGTCCAATCGCGAATCGGCCCGGCGATCGCGTATGAAGAAGCAGAAGCGTGTAGAGGAGTTGACGGTGGAGATCAACCAGCTCCAGATCTTGAATAGCCAAATCTGGCAGAGCATCGACGCCAAGGGCAAAGCGTACAATGAGGTGGAGGCATGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTCACTGATCGACTTCGCTACTTGGAGTCGATTGAACAGACTTTTGTGGAGTTCAGCGGCGTCTTCGATAAGGACATTAACGACATGGCTGAGATGCATGACTCTCTGCTCAATCCGTGGCAGTTTCCTTACTCGACTCAACCGATCACCGCTTCTTCTGCTGATATGTTTCTCGATTGGCCATGGTCAATTGCATTAGTCCTTTGCTTTTCGATTGTTACTGTTATATCAATCATTTCTGTTTTCAGTGCTCGTCACCGGGATATCTTTAGGTACAGAGATGCAGGTCCACACCTTCGATCAGATGTTCTGAATCCCCGAGACATCTTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

198

Amino Acids

23.05

Weight (kDa)

6.33

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	18 - 65	5.7e-08	Basic region leucine zipper
bZIP_1	PF00170	20 - 67	1.1e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AccII	CGCG	2 cut(s)	87, 106
AciI	CCGC	2 cut(s)	318, 411
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	440
AcyI	GRCGYC	2 cut(s)	195, 321
AfaI	GTAC	2 cut(s)	212, 536
AgsI	TTSAA	2 cut(s)	169, 296
AluBI	AGCT	4 cut(s)	27, 33, 157, 262
AluI	AGCT	4 cut(s)	27, 33, 157, 262
Alw21I	GWGCWC	3 cut(s)	29, 264, 514
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	579
AoxI	GGCC	2 cut(s)	93, 440
AsiSI	GCGATCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	94, 548
AsuC2I	CCSGG	2 cut(s)	97, 521
AsuHPI	GGTGA	2 cut(s)	400, 509
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	29, 250, 264
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	3 cut(s)	29, 264, 514
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcnI	CCSGG	2 cut(s)	97, 521
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	97, 521
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	94, 548
BmrFI	CCNGG	2 cut(s)	97, 521
BmsI	GCATC	4 cut(s)	63, 198, 345, 532
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	2 cut(s)	13, 143
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	2 cut(s)	97, 521
BsaHI	GRCGYC	2 cut(s)	195, 321
BsaJI	CCNNGG	3 cut(s)	198, 377, 443
BseDI	CCNNGG	3 cut(s)	198, 377, 443
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	263, 342
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	87, 106
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	95, 442
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	3 cut(s)	29, 264, 514
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	2 cut(s)	97, 520
BsmAI	GTCTC	1 cut(s)	576
BsnI	GGCC	2 cut(s)	95, 442
BsoBI	CYCGRG	1 cut(s)	579
Bsp1286I	GDGCHC	4 cut(s)	29, 250, 264, 514
Bsp143I	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
Bsp19I	CCATGG	1 cut(s)	443
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	2 cut(s)	318, 411
BspANI	GGCC	2 cut(s)	95, 442
BspCNI	CTCAG	2 cut(s)	262, 343
BspFNI	CGCG	2 cut(s)	87, 106
BspHI	TCATGA	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	198, 377, 443
BssMI	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
BssNI	GRCGYC	2 cut(s)	195, 321
BssT1I	CCWWGG	2 cut(s)	198, 443
Bst4CI	ACNGT	2 cut(s)	142, 484
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	195, 321
BstDEI	CTNAG	2 cut(s)	249, 351
BstDSI	CCRYGG	2 cut(s)	377, 443
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	87, 106
BstKTI	GATC	7 cut(s)	44, 104, 150, 165, 271, 408, 563
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	95, 519
BstUI	CGCG	2 cut(s)	87, 106
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	41, 162
BstYI	RGATCY	2 cut(s)	41, 162
BsuRI	GGCC	2 cut(s)	95, 442
BtgI	CCRYGG	2 cut(s)	377, 443
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	264, 514
BtuMI	TCGCGA	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	94, 548
CseI	GACGC	2 cut(s)	203, 310
Csp6I	GTAC	2 cut(s)	211, 535
CviAII	CATG	5 cut(s)	228, 241, 346, 359, 444
CviJI	RGCY	9 cut(s)	27, 33, 95, 157, 174, 248, 262, 350, 442
CviKI_1	RGCY	9 cut(s)	27, 33, 95, 157, 174, 248, 262, 350, 442
CviQI	GTAC	2 cut(s)	211, 535
DdeI	CTNAG	2 cut(s)	249, 351
DpnI	GATC	7 cut(s)	43, 103, 149, 164, 270, 407, 562
DpnII	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	2 cut(s)	27, 262
Eco130I	CCWWGG	2 cut(s)	198, 443
Eco24I	GRGCYC	3 cut(s)	29, 250, 264
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	2 cut(s)	27, 262
Eco88I	CYCGRG	1 cut(s)	579
EcoICRI	GAGCTC	2 cut(s)	27, 262
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	198, 443
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	3 cut(s)	29, 250, 264
ErhI	CCWWGG	2 cut(s)	198, 443
FaeI	CATG	5 cut(s)	231, 244, 349, 362, 447
FaiI	YATR	8 cut(s)	110, 229, 242, 347, 360, 428, 445, 488
FatI	CATG	5 cut(s)	227, 240, 345, 358, 443
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	3 cut(s)	29, 250, 264
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	595
GluI	GCNGC	1 cut(s)	319
GsuI	CTGGAG	2 cut(s)	13, 143
HaeIII	GGCC	2 cut(s)	95, 442
HapII	CCGG	2 cut(s)	97, 520
HgaI	GACGC	2 cut(s)	203, 310
Hin1I	GRCGYC	2 cut(s)	195, 321
Hin1II	CATG	5 cut(s)	231, 244, 349, 362, 447
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	5 cut(s)	89, 287, 362, 397, 574
HpaII	CCGG	2 cut(s)	97, 520
HphI	GGTGA	2 cut(s)	400, 509
Hpy166II	GTNNAC	2 cut(s)	138, 551
Hpy188I	TCNGA	3 cut(s)	37, 565, 573
Hpy188III	TCNNGA	6 cut(s)	86, 160, 166, 241, 251, 434
Hpy8I	GTNNAC	2 cut(s)	138, 551
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	250, 566
HpyCH4III	ACNGT	2 cut(s)	142, 484
HpyCH4V	TGCA	4 cut(s)	76, 358, 455, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	249, 351
Hsp92I	GRCGYC	2 cut(s)	195, 321
Hsp92II	CATG	5 cut(s)	231, 244, 349, 362, 447
Kzo9I	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
LmnI	GCTCC	4 cut(s)	32, 38, 162, 259
LpnPI	CCDG	8 cut(s)	43, 110, 166, 167, 173, 236, 531, 533
LweI	GCATC	4 cut(s)	63, 198, 345, 532
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	2 cut(s)	478, 515
MalI	GATC	7 cut(s)	43, 103, 149, 164, 270, 407, 562
MboI	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
MboII	GAAGA	6 cut(s)	73, 79, 82, 124, 316, 408
MfeI	CAATTG	2 cut(s)	20, 450
MflI	RGATCY	2 cut(s)	41, 162
MhlI	GDGCHC	4 cut(s)	29, 250, 264, 514
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	2 cut(s)	20, 450
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	3 cut(s)	296, 356, 391
MnlI	CCTC	5 cut(s)	57, 124, 211, 217, 237
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	2 cut(s)	97, 520
MspR9I	CCNGG	2 cut(s)	97, 521
MunI	CAATTG	2 cut(s)	20, 450
MvnI	CGCG	2 cut(s)	87, 106
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	97, 521
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
NlaIII	CATG	5 cut(s)	231, 244, 349, 362, 447
NmuCI	GTSAC	1 cut(s)	515
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	360
PagI	TCATGA	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	89, 574
PkrI	GCNGC	1 cut(s)	320
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	3 cut(s)	295, 356, 391
PpsI	GAGTC	3 cut(s)	295, 356, 391
Psp124BI	GAGCTC	2 cut(s)	29, 264
PspPI	GGNCC	2 cut(s)	94, 548
PsuI	RGATCY	2 cut(s)	41, 162
PvuI	CGATCG	1 cut(s)	104
RgaI	GCGATCGC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	87
RsaI	GTAC	2 cut(s)	212, 536
RsaNI	GTAC	2 cut(s)	211, 535
SacI	GAGCTC	2 cut(s)	29, 264
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	7 cut(s)	41, 101, 147, 162, 268, 405, 560
Sau96I	GGNCC	2 cut(s)	94, 548
SchI	GAGTC	3 cut(s)	296, 356, 391
ScrFI	CCNGG	2 cut(s)	97, 521
SduI	GDGCHC	4 cut(s)	29, 250, 264, 514
SetI	ASST	8 cut(s)	29, 35, 159, 222, 264, 536, 550, 558
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	4 cut(s)	63, 198, 345, 532
SgfI	GCGATCGC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	2 cut(s)	20, 450
SsiI	CCGC	2 cut(s)	318, 411
SspMI	CTAG	1 cut(s)	595
SstI	GAGCTC	2 cut(s)	29, 264
StyD4I	CCNGG	2 cut(s)	95, 519
StyI	CCWWGG	2 cut(s)	198, 443
TaaI	ACNGT	2 cut(s)	142, 484
TaqI	TCGA	8 cut(s)	192, 271, 290, 327, 395, 435, 473, 559
TasI	AATT	2 cut(s)	20, 450
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	89, 574
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	271, 514
TseFI	GTSAC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	69, 125
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	271, 514
VpaK11BI	GGWCC	1 cut(s)	548
XspI	CTAG	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.