Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

22306388 .. 22307187

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTTCAGTTCAGCAGCAATCAAGCTCAGGATCAGATGGGTCTGCATCGGTGGACGAAAAGAAGAGGAAGAGGATGTTGTCGAATCGCGAATCGGCGAGGCGATCGCGGATGAAGAAGCAGAAGCAAATGGATGATTTGACGAGCGAAATCACCCGACTGGAGATGTCAAACAATCAACTTCTGCAGGGAATCGAAGTGAAGGAGCGGGGCTACGCTGAGATAGAGTCTAGGAACAACGTGATGAGGGCTCAAGTAATGGAGCTCACCGATCGTTTGCAGTCGTTGAACTCGGTGCTCCAGATCTTCGAAGAGGTTAGCGGCCTTGCTGTGGACATCCCTGAGATACCTGATCCGCTGCTGAGGCCGTGGCAGGTTTCCTACCCAACGCAGCTCATCCCGGCCTCTTCCGACATGTTTCTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

5.59

Isoelectric Point (pI)

71.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	90, 109
AciI	CCGC	4 cut(s)	109, 208, 321, 356
AclWI	GGATC	2 cut(s)	40, 347
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	3 cut(s)	27, 265, 394
AluI	AGCT	3 cut(s)	27, 265, 394
Alw21I	GWGCWC	2 cut(s)	267, 300
AlwI	GGATC	2 cut(s)	40, 347
AoxI	GGCC	3 cut(s)	322, 365, 402
ApeKI	GCWGC	3 cut(s)	16, 358, 391
AsiSI	GCGATCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	145, 259
AsuII	TTCGAA	1 cut(s)	309
BanII	GRGCYC	2 cut(s)	253, 267
Bbv12I	GWGCWC	2 cut(s)	267, 300
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	28, 345, 403
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	4 cut(s)	17, 322, 359, 392
BlsI	GCNGC	4 cut(s)	18, 323, 360, 393
Bme1390I	CCNGG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	182, 284
Bpu10I	CCTNAGC	2 cut(s)	28, 362
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	5 cut(s)	81, 117, 139, 336, 396
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	4 cut(s)	42, 210, 333, 353
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	28, 345, 403
Bsh1236I	CGCG	2 cut(s)	90, 109
Bsh1285I	CGRYCG	2 cut(s)	107, 274
BshFI	GGCC	3 cut(s)	324, 367, 404
BsiEI	CGRYCG	2 cut(s)	107, 274
BsiHKAI	GWGCWC	2 cut(s)	267, 300
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	331
BsnI	GGCC	3 cut(s)	324, 367, 404
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	253, 267, 300
Bsp143I	GATC	5 cut(s)	32, 104, 271, 303, 352
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	4 cut(s)	109, 208, 321, 356
BspANI	GGCC	3 cut(s)	324, 367, 404
BspCNI	CTCAG	4 cut(s)	41, 211, 334, 354
BspFNI	CGCG	2 cut(s)	90, 109
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	40, 347
BspT104I	TTCGAA	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	5 cut(s)	32, 104, 271, 303, 352
Bst6I	CTCTTC	4 cut(s)	59, 65, 306, 412
BstBI	TTCGAA	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	28, 219, 342, 362
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	5 cut(s)	81, 117, 139, 336, 396
BstFNI	CGCG	2 cut(s)	90, 109
BstKTI	GATC	5 cut(s)	35, 107, 274, 306, 355
BstMBI	GATC	5 cut(s)	32, 104, 271, 303, 352
BstMCI	CGRYCG	2 cut(s)	107, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	2 cut(s)	90, 109
BstV1I	GCAGC	3 cut(s)	28, 345, 403
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	324, 367, 404
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	5 cut(s)	81, 117, 139, 336, 396
BtuMI	TCGCGA	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	364
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	9 cut(s)	27, 213, 251, 265, 324, 367, 394, 404, 426
CviKI_1	RGCY	9 cut(s)	27, 213, 251, 265, 324, 367, 394, 404, 426
DdeI	CTNAG	4 cut(s)	28, 219, 342, 362
DpnI	GATC	5 cut(s)	34, 106, 273, 305, 354
DpnII	GATC	5 cut(s)	32, 104, 271, 303, 352
Eam1104I	CTCTTC	4 cut(s)	59, 65, 306, 412
EarI	CTCTTC	4 cut(s)	59, 65, 306, 412
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	253, 267
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	253, 267
FaeI	CATG	1 cut(s)	418
FaiI	YATR	1 cut(s)	416
FatI	CATG	1 cut(s)	414
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	17, 322, 359, 392
FokI	GGATG	5 cut(s)	88, 124, 146, 323, 383
FriOI	GRGCYC	2 cut(s)	253, 267
Fsp4HI	GCNGC	4 cut(s)	17, 322, 359, 392
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	4 cut(s)	17, 322, 359, 392
GsuI	CTGGAG	2 cut(s)	182, 284
HaeIII	GGCC	3 cut(s)	324, 367, 404
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	1 cut(s)	418
HinfI	GANTC	4 cut(s)	85, 92, 192, 227
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	145, 259
Hpy166II	GTNNAC	2 cut(s)	55, 334
Hpy188I	TCNGA	2 cut(s)	37, 412
Hpy188III	TCNNGA	3 cut(s)	30, 89, 301
Hpy8I	GTNNAC	2 cut(s)	55, 334
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	47, 187, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	4 cut(s)	28, 219, 342, 362
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	32, 104, 271, 303, 352
LmnI	GCTCC	3 cut(s)	205, 262, 303
LpnPI	CCDG	8 cut(s)	15, 146, 173, 314, 354, 359, 363, 414
Lsp1109I	GCAGC	3 cut(s)	28, 345, 403
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	240
MalI	GATC	5 cut(s)	34, 106, 273, 305, 354
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	5 cut(s)	32, 104, 271, 303, 352
MboII	GAAGA	6 cut(s)	76, 82, 127, 298, 323, 399
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	253, 267, 300
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	60, 66, 93, 240, 307, 357, 415
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	90, 109
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	32, 104, 271, 303, 352
NlaIII	CATG	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	402
NruI	TCGCGA	1 cut(s)	90
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	309
PciI	ACATGT	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	85, 92, 192
PkrI	GCNGC	4 cut(s)	18, 323, 360, 393
Ple19I	CGATCG	2 cut(s)	107, 274
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PscI	ACATGT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	303
PvuI	CGATCG	2 cut(s)	107, 274
RgaI	GCGATCGC	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	4 cut(s)	17, 322, 359, 392
Sau3AI	GATC	5 cut(s)	32, 104, 271, 303, 352
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	3 cut(s)	253, 267, 300
SetI	ASST	7 cut(s)	29, 243, 267, 318, 352, 378, 396
SfaAI	GCGATCGC	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	185
SfuI	TTCGAA	1 cut(s)	309
SgfI	GCGATCGC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SsiI	CCGC	4 cut(s)	109, 208, 321, 356
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	399
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	83, 195, 309
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	85, 92, 192
TseI	GCWGC	3 cut(s)	16, 358, 391
TspDTI	ATGAA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.