Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

58558719 .. 58559135

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG354800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATTTCAGCATCTGTGGTGGATGACAAGAAGAGGAAGAAGATGCAGTCCAATCGCGAATCGGCCCGGCGATCGCAGATGAAGAAGCAGAAGCGTGTGGAGGAGCTGACGGTGGAGATCAGTCGGCTCCAGATCTCGAACAGCCAAATCCGGCAGAGCATCGACGCCAAGGACAAAGCCTACAGCGAGGTGGAAGCGTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTGACTGATCGACTTCGCTACTTGGAGTCGATTGAACAGACTTTTGTGGAGTTCAGCGGCGTCTTCGATAAGGACATTAATGACATGGCTGAGATGCATGACTCTCTGCTCAATCCGTGGCAGCTTCCTTACTCGACTCAGCCGATCAATGCTTCATCTGCTGATATGTTTCTCGATTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

138

Amino Acids

16.18

Weight (kDa)

5.53

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	8 - 56	3.4e-06	Basic region leucine zipper
bZIP_1	PF00170	9 - 63	1.5e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	410
AcyI	GRCGYC	2 cut(s)	165, 291
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	3 cut(s)	106, 232, 355
AluI	AGCT	3 cut(s)	106, 232, 355
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	63, 410
ApeKI	GCWGC	1 cut(s)	352
AseI	ATTAAT	1 cut(s)	309
AsiSI	GCGATCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcnI	CCSGG	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	181
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	2 cut(s)	289, 353
BlsI	GCNGC	2 cut(s)	290, 354
Bme1390I	CCNGG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	4 cut(s)	20, 33, 168, 315
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	165, 291
BsaJI	CCNNGG	2 cut(s)	168, 347
BseDI	CCNNGG	2 cut(s)	168, 347
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	233, 312, 383
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	65, 412
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	67, 151
BsnI	GGCC	2 cut(s)	65, 412
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	71, 117, 132, 238, 375
Bsp68I	TCGCGA	1 cut(s)	57
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	65, 412
BspCNI	CTCAG	3 cut(s)	232, 313, 382
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	168, 347
BssMI	GATC	5 cut(s)	71, 117, 132, 238, 375
BssNI	GRCGYC	2 cut(s)	165, 291
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	2 cut(s)	165, 291
BstDEI	CTNAG	3 cut(s)	219, 321, 369
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	5 cut(s)	74, 120, 135, 241, 378
BstMBI	GATC	5 cut(s)	71, 117, 132, 238, 375
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	65, 412
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	28
BtuMI	TCGCGA	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	173, 280
CviAII	CATG	4 cut(s)	211, 316, 329, 414
DdeI	CTNAG	3 cut(s)	219, 321, 369
DpnI	GATC	5 cut(s)	73, 119, 134, 240, 377
DpnII	GATC	5 cut(s)	71, 117, 132, 238, 375
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	214, 319, 332, 417
FaiI	YATR	5 cut(s)	212, 317, 330, 398, 415
FatI	CATG	4 cut(s)	210, 315, 328, 413
Fnu4HI	GCNGC	2 cut(s)	289, 353
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	289, 353
GluI	GCNGC	2 cut(s)	289, 353
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	65, 412
HapII	CCGG	2 cut(s)	67, 151
HgaI	GACGC	2 cut(s)	173, 280
Hin1I	GRCGYC	2 cut(s)	165, 291
Hin1II	CATG	4 cut(s)	214, 319, 332, 417
HinfI	GANTC	4 cut(s)	59, 257, 332, 367
HpaII	CCGG	2 cut(s)	67, 151
Hpy188III	TCNNGA	6 cut(s)	56, 130, 136, 211, 221, 404
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	46, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	219, 321, 369
Hsp92I	GRCGYC	2 cut(s)	165, 291
Hsp92II	CATG	4 cut(s)	214, 319, 332, 417
Kzo9I	GATC	5 cut(s)	71, 117, 132, 238, 375
LmnI	GCTCC	3 cut(s)	103, 132, 229
LpnPI	CCDG	4 cut(s)	80, 143, 164, 206
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	4 cut(s)	20, 33, 168, 315
MalI	GATC	5 cut(s)	73, 119, 134, 240, 377
MboI	GATC	5 cut(s)	71, 117, 132, 238, 375
MboII	GAAGA	5 cut(s)	43, 49, 52, 94, 286
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	412
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	3 cut(s)	266, 326, 361
MnlI	CCTC	4 cut(s)	27, 94, 181, 207
Mox20I	TGGCCA	1 cut(s)	412
Mph1103I	ATGCAT	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	2 cut(s)	67, 151
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	71, 117, 132, 238, 375
NlaIII	CATG	4 cut(s)	214, 319, 332, 417
NlaIV	GGNNCC	1 cut(s)	128
NruI	TCGCGA	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	330
PagI	TCATGA	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	290, 354
Ple19I	CGATCG	1 cut(s)	74
PleI	GAGTC	3 cut(s)	265, 326, 361
PpsI	GAGTC	3 cut(s)	265, 326, 361
PshBI	ATTAAT	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	132
PvuI	CGATCG	1 cut(s)	74
RgaI	GCGATCGC	1 cut(s)	74
RruI	TCGCGA	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	289, 353
Sau3AI	GATC	5 cut(s)	71, 117, 132, 238, 375
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	266, 326, 361
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	4 cut(s)	108, 192, 234, 357
SfaAI	GCGATCGC	1 cut(s)	74
SfaNI	GCATC	4 cut(s)	20, 33, 168, 315
SfcI	CTRYAG	1 cut(s)	181
SgfI	GCGATCGC	1 cut(s)	74
SsiI	CCGC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	7 cut(s)	137, 162, 241, 260, 297, 365, 405
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	95, 375
TspGWI	ACGGA	1 cut(s)	336
VspI	ATTAAT	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.