Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

28928792 .. 28929238

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCTTCGGTTCAGCGCCAATCGAGCTCCGGCTCCGACGGATGCGTGGTGGACGACAAGAAGAGGAAGAAGATGGAGTCCAACCGCGAATCGGCGCGGCGATCAAGGATGAAGAAGCAGAAGCACGTGGAGGAGCTGACGGTGGAGATCACCCGGCTCCAGATCTCCAACAACCAGCTCCGGCAGAGCATCGACGCCAAGGATAAGGCCTACAGCGAGTTGGAGGCCTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTCACGGATCGGCTGCGCTACTTGGAGTCGATTGAGCAGACATTTGTGGAGTTCAGCGGCGGATTCGATGAGAACATGAATGGCATGGCTGAGATGCATGACACAATGCTCAATCCGTGGCAGATTCCTTACTCTACTCAGCCCATCACGGCTTCCTCTGCCGATATGTTTCTCGATTGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

149

Amino Acids

17.19

Weight (kDa)

5.49

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	18 - 66	4e-08	Basic region leucine zipper
bZIP_1	PF00170	19 - 75	9.1e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 97
AciI	CCGC	4 cut(s)	85, 97, 318, 321
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	440
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	27, 136, 178, 262
AluI	AGCT	4 cut(s)	27, 136, 178, 262
Alw21I	GWGCWC	2 cut(s)	29, 264
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	3 cut(s)	207, 225, 440
ApeKI	GCWGC	1 cut(s)	274
AspLEI	GCGC	3 cut(s)	18, 97, 279
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	29, 250, 264
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	29, 264
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	2 cut(s)	67, 413
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	98, 275, 319
BlsI	GCNGC	3 cut(s)	99, 276, 320
Bme1390I	CCNGG	2 cut(s)	154, 229
BmiI	GGNNCC	2 cut(s)	34, 158
BmrFI	CCNGG	2 cut(s)	154, 229
BmsI	GCATC	3 cut(s)	32, 198, 345
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	198, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	198, 377
BseGI	GGATG	2 cut(s)	47, 114
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	3 cut(s)	263, 342, 413
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	2 cut(s)	87, 97
BshFI	GGCC	3 cut(s)	209, 227, 442
BsiHKAI	GWGCWC	2 cut(s)	29, 264
BsiSI	CCGG	3 cut(s)	30, 154, 181
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	3 cut(s)	209, 227, 442
Bsp1286I	GDGCHC	3 cut(s)	29, 250, 264
Bsp143I	GATC	4 cut(s)	101, 147, 162, 268
BspACI	CCGC	4 cut(s)	85, 97, 318, 321
BspANI	GGCC	3 cut(s)	209, 227, 442
BspCNI	CTCAG	3 cut(s)	262, 343, 412
BspFNI	CGCG	2 cut(s)	87, 97
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	34, 158
BspPI	GGATC	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	198, 377
BssMI	GATC	4 cut(s)	101, 147, 162, 268
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	249, 351, 399
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	47, 114
BstFNI	CGCG	2 cut(s)	87, 97
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	3 cut(s)	18, 97, 279
BstKTI	GATC	4 cut(s)	104, 150, 165, 271
BstMBI	GATC	4 cut(s)	101, 147, 162, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 419
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	152, 227
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	87, 97
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	209, 227, 442
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	47, 114
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	3 cut(s)	18, 97, 279
CseI	GACGC	1 cut(s)	203
CviAII	CATG	4 cut(s)	241, 337, 346, 359
DdeI	CTNAG	3 cut(s)	249, 351, 399
DpnI	GATC	4 cut(s)	103, 149, 164, 270
DpnII	GATC	4 cut(s)	101, 147, 162, 268
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	336
Ecl136II	GAGCTC	2 cut(s)	27, 262
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	2 cut(s)	209, 227
Eco24I	GRGCYC	3 cut(s)	29, 250, 264
Eco53kI	GAGCTC	2 cut(s)	27, 262
Eco72I	CACGTG	1 cut(s)	127
EcoICRI	GAGCTC	2 cut(s)	27, 262
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	3 cut(s)	29, 250, 264
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	4 cut(s)	244, 340, 349, 362
FaiI	YATR	6 cut(s)	242, 338, 347, 360, 428, 445
FatI	CATG	4 cut(s)	240, 336, 345, 358
Fnu4HI	GCNGC	3 cut(s)	98, 275, 319
FokI	GGATG	2 cut(s)	54, 121
FriOI	GRGCYC	3 cut(s)	29, 250, 264
Fsp4HI	GCNGC	3 cut(s)	98, 275, 319
GlaI	GCGC	3 cut(s)	17, 96, 278
GluI	GCNGC	3 cut(s)	98, 275, 319
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	209, 227, 442
HapII	CCGG	3 cut(s)	30, 154, 181
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	3 cut(s)	18, 97, 279
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	244, 340, 349, 362
Hin6I	GCGC	3 cut(s)	16, 95, 277
HinP1I	GCGC	3 cut(s)	16, 95, 277
HinfI	GANTC	5 cut(s)	77, 89, 287, 324, 385
HpaII	CCGG	3 cut(s)	30, 154, 181
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	4 cut(s)	160, 241, 251, 434
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	41, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 419
HpyF3I	CTNAG	3 cut(s)	249, 351, 399
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	244, 340, 349, 362
HspAI	GCGC	3 cut(s)	16, 95, 277
Kzo9I	GATC	4 cut(s)	101, 147, 162, 268
LmnI	GCTCC	6 cut(s)	32, 38, 133, 162, 183, 259
LpnPI	CCDG	8 cut(s)	43, 167, 173, 188, 194, 214, 236, 241
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	3 cut(s)	32, 198, 345
MaeII	ACGT	1 cut(s)	126
MalI	GATC	4 cut(s)	103, 149, 164, 270
MboI	GATC	4 cut(s)	101, 147, 162, 268
MboII	GAAGA	4 cut(s)	73, 79, 82, 124
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	3 cut(s)	29, 250, 264
MlsI	TGGCCA	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	2 cut(s)	86, 296
MmeI	TCCRAC	4 cut(s)	60, 105, 192, 201
MnlI	CCTC	5 cut(s)	57, 124, 217, 237, 427
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	442
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	30, 154, 181
MspR9I	CCNGG	2 cut(s)	154, 229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	87, 97
MwoI	GCNNNNNNNGC	2 cut(s)	24, 419
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	4 cut(s)	101, 147, 162, 268
NlaIII	CATG	4 cut(s)	244, 340, 349, 362
NlaIV	GGNNCC	2 cut(s)	34, 158
NsiI	ATGCAT	1 cut(s)	360
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	2 cut(s)	209, 227
PfeI	GAWTC	3 cut(s)	89, 324, 385
PkrI	GCNGC	3 cut(s)	99, 276, 320
PleI	GAGTC	2 cut(s)	85, 295
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	2 cut(s)	85, 295
Ppu21I	YACGTR	1 cut(s)	127
Psp124BI	GAGCTC	2 cut(s)	29, 264
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	34, 158
PsuI	RGATCY	1 cut(s)	162
SacI	GAGCTC	2 cut(s)	29, 264
SatI	GCNGC	3 cut(s)	98, 275, 319
Sau3AI	GATC	4 cut(s)	101, 147, 162, 268
SchI	GAGTC	2 cut(s)	86, 296
ScrFI	CCNGG	2 cut(s)	154, 229
SduI	GDGCHC	3 cut(s)	29, 250, 264
SetI	ASST	5 cut(s)	29, 129, 138, 180, 264
SfaNI	GCATC	3 cut(s)	32, 198, 345
SfcI	CTRYAG	1 cut(s)	211
SseBI	AGGCCT	2 cut(s)	209, 227
SsiI	CCGC	4 cut(s)	85, 97, 318, 321
SstI	GAGCTC	2 cut(s)	29, 264
StuI	AGGCCT	2 cut(s)	209, 227
StyD4I	CCNGG	2 cut(s)	152, 227
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	5 cut(s)	23, 192, 290, 327, 435
TauI	GCSGC	2 cut(s)	100, 321
TfiI	GAWTC	3 cut(s)	89, 324, 385
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	125, 353
TspGWI	ACGGA	3 cut(s)	54, 281, 366
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.