Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

23193617 .. 23194045

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTTTGGTTCAGCGCCAATCTAGCTCAGGATCCGACGGGTCCGCGACGGTGGACGAGAAGAAGAGGAAGAGGATGCTGTCCAACCGCGAATCCGCGAGGCGTTCGAGGATGAAGAAGCAGAAGCAGATAGATGATTTGACGACTGAGATCACCCGTTTGGAGATGTCGAACAATCAGGTTCGGCAGACAGTCGATGCCAGGGAGCGGAGCTACAAAGAGATAGAGTCTGCAAACAATGTGCTGAGAGCTCAAGCAATGGAGCTCACCGATCGACTGCAGTCGTTAAACTCGGTCCTCCATATATTCGAAGAGGTCAGCGGCTTCTCGGTTGACATCCCCGAGATGCATGATCCTCTGCTTAAGCCATGGCAGCGCCCCTACCCGTCGCAGCCCATCCCGGCCTCGTCCGGCATGTTCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

9.39

Isoelectric Point (pI)

73.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	19 - 70	9.4e-09	Basic region leucine zipper
bZIP_1	PF00170	21 - 79	6.6e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	3 cut(s)	47, 90, 98
AciI	CCGC	5 cut(s)	45, 88, 96, 208, 321
AclWI	GGATC	3 cut(s)	27, 40, 347
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflII	CTTAAG	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	4 cut(s)	27, 213, 251, 265
AluI	AGCT	4 cut(s)	27, 213, 251, 265
Alw21I	GWGCWC	2 cut(s)	253, 267
AlwI	GGATC	3 cut(s)	27, 40, 347
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	373, 391
AspLEI	GCGC	2 cut(s)	18, 378
AspS9I	GGNCC	2 cut(s)	42, 295
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	145, 259
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	42, 295
BamHI	GGATCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	253, 267
Bbv12I	GWGCWC	2 cut(s)	253, 267
BbvI	GCAGC	2 cut(s)	385, 403
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	2 cut(s)	19, 379
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	322, 374, 392
BlsI	GCNGC	3 cut(s)	323, 375, 393
Bme1390I	CCNGG	2 cut(s)	202, 401
Bme18I	GGWCC	2 cut(s)	42, 295
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	42, 295
BmiI	GGNNCC	2 cut(s)	34, 43
BmrFI	CCNGG	2 cut(s)	202, 401
BmsI	GCATC	3 cut(s)	66, 187, 336
BoxI	GACNNNNGTC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	201, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	201, 368
BseGI	GGATG	4 cut(s)	81, 117, 336, 396
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	42, 138, 236
BseXI	GCAGC	2 cut(s)	385, 403
Bsh1236I	CGCG	3 cut(s)	47, 90, 98
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	253, 267
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	401, 411
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	253, 267
Bsp143I	GATC	4 cut(s)	32, 150, 271, 352
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	5 cut(s)	45, 88, 96, 208, 321
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	3 cut(s)	41, 139, 237
BspFNI	CGCG	3 cut(s)	47, 90, 98
BspLI	GGNNCC	2 cut(s)	34, 43
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	3 cut(s)	27, 40, 347
BspT104I	TTCGAA	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	201, 368
BssMI	GATC	4 cut(s)	32, 150, 271, 352
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	52, 193
Bst6I	CTCTTC	3 cut(s)	59, 65, 306
BstAFI	CTTAAG	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	28, 147, 245
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	81, 117, 336, 396
BstFNI	CGCG	3 cut(s)	47, 90, 98
BstH2I	RGCGCY	2 cut(s)	19, 379
BstHHI	GCGC	2 cut(s)	18, 378
BstKTI	GATC	4 cut(s)	35, 153, 274, 355
BstMBI	GATC	4 cut(s)	32, 150, 271, 352
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 373
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	418
BstPAI	GACNNNNGTC	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	200, 399
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	3 cut(s)	47, 90, 98
BstV1I	GCAGC	2 cut(s)	385, 403
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	4 cut(s)	81, 117, 336, 396
CfoI	GCGC	2 cut(s)	18, 378
Cfr13I	GGNCC	2 cut(s)	42, 295
CviAII	CATG	3 cut(s)	350, 369, 415
CviJI	RGCY	8 cut(s)	27, 213, 251, 265, 324, 367, 394, 404
CviKI_1	RGCY	8 cut(s)	27, 213, 251, 265, 324, 367, 394, 404
DdeI	CTNAG	3 cut(s)	28, 147, 245
DpnI	GATC	4 cut(s)	34, 152, 273, 354
DpnII	GATC	4 cut(s)	32, 150, 271, 352
Eam1104I	CTCTTC	3 cut(s)	59, 65, 306
EarI	CTCTTC	3 cut(s)	59, 65, 306
Ecl136II	GAGCTC	2 cut(s)	251, 265
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	253, 267
Eco47I	GGWCC	2 cut(s)	42, 295
Eco53kI	GAGCTC	2 cut(s)	251, 265
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	251, 265
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	253, 267
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	3 cut(s)	353, 372, 418
FaiI	YATR	5 cut(s)	303, 305, 351, 370, 416
FatI	CATG	3 cut(s)	349, 368, 414
Fnu4HI	GCNGC	3 cut(s)	322, 374, 392
FokI	GGATG	4 cut(s)	88, 124, 323, 383
FriOI	GRGCYC	2 cut(s)	253, 267
Fsp4HI	GCNGC	3 cut(s)	322, 374, 392
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	2 cut(s)	17, 377
GluI	GCNGC	3 cut(s)	322, 374, 392
HaeII	RGCGCY	2 cut(s)	19, 379
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	2 cut(s)	401, 411
HhaI	GCGC	2 cut(s)	18, 378
Hin1II	CATG	3 cut(s)	353, 372, 418
Hin6I	GCGC	2 cut(s)	16, 376
HinP1I	GCGC	2 cut(s)	16, 376
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	92, 227
HpaII	CCGG	2 cut(s)	401, 411
HphI	GGTGA	2 cut(s)	145, 259
Hpy166II	GTNNAC	2 cut(s)	55, 334
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	2 cut(s)	55, 334
Hpy99I	CGWCG	3 cut(s)	41, 52, 391
HpyCH4III	ACNGT	2 cut(s)	52, 193
HpyCH4V	TGCA	3 cut(s)	233, 280, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 373
HpyF3I	CTNAG	3 cut(s)	28, 147, 245
Hsp92II	CATG	3 cut(s)	353, 372, 418
HspAI	GCGC	2 cut(s)	16, 376
Kzo9I	GATC	4 cut(s)	32, 150, 271, 352
LmnI	GCTCC	3 cut(s)	205, 210, 262
LpnPI	CCDG	6 cut(s)	15, 164, 187, 214, 414, 424
Lsp1109I	GCAGC	2 cut(s)	385, 403
LweI	GCATC	3 cut(s)	66, 187, 336
MaeI	CTAG	1 cut(s)	24
MalI	GATC	4 cut(s)	34, 152, 273, 354
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	4 cut(s)	32, 150, 271, 352
MboII	GAAGA	6 cut(s)	73, 76, 82, 127, 323, 412
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	253, 267
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	60, 108
MnlI	CCTC	8 cut(s)	60, 66, 93, 102, 307, 308, 366, 415
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	2 cut(s)	287, 363
MspA1I	CMGCKG	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	401, 411
MspR9I	CCNGG	2 cut(s)	202, 401
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	3 cut(s)	47, 90, 98
MwoI	GCNNNNNNNGC	2 cut(s)	24, 373
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	32, 150, 271, 352
NlaIII	CATG	3 cut(s)	353, 372, 418
NlaIV	GGNNCC	2 cut(s)	34, 43
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	323, 375, 393
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshAI	GACNNNNGTC	1 cut(s)	280
Psp124BI	GAGCTC	2 cut(s)	253, 267
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	34, 43
PspPI	GGNCC	2 cut(s)	42, 295
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	32
PvuI	CGATCG	1 cut(s)	274
SacI	GAGCTC	2 cut(s)	253, 267
SaqAI	TTAA	2 cut(s)	287, 363
SatI	GCNGC	3 cut(s)	322, 374, 392
Sau3AI	GATC	4 cut(s)	32, 150, 271, 352
Sau96I	GGNCC	2 cut(s)	42, 295
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	202, 401
SduI	GDGCHC	2 cut(s)	253, 267
SetI	ASST	6 cut(s)	29, 183, 215, 253, 267, 318
SfaNI	GCATC	3 cut(s)	66, 187, 336
SfcI	CTRYAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	2 cut(s)	42, 295
SmlI	CTYRAG	2 cut(s)	252, 362
SmoI	CTYRAG	2 cut(s)	252, 362
SsiI	CCGC	5 cut(s)	45, 88, 96, 208, 321
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	2 cut(s)	253, 267
StyD4I	CCNGG	2 cut(s)	200, 399
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	52, 193
TaqI	TCGA	5 cut(s)	107, 170, 195, 274, 309
TaqII	GACCGA	1 cut(s)	283
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	287, 363
Tru9I	TTAA	2 cut(s)	287, 363
TseI	GCWGC	2 cut(s)	373, 391
TspDTI	ATGAA	2 cut(s)	128, 412
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	42, 295
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.