Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

38616242 .. 38617180

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCGTCGGTTCAGCGCCAATCGAGCTCCGGCTCCGACGGATCTGTGGTGGATGACAAGAAGAGGAAGAAGATGCAGTCTAATCGCGAATCGGCCTGGCGATCGCGGATGAAGAAGCAGAAGCGTGTGAAGAAGCAGAAGCGTGTGGAGGAGCCGACAGCGGAGATCAGCCGGCTCCAGATCTCGAACAGCCAAATCCGGCAGAGCATCGACTCCAATGACAAAGCCTACAGCGAGGTGGAGGCCTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTGACTGATCGACTTCGCTACTTGGAGTCGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

104

Amino Acids

12.19

Weight (kDa)

10.11

Isoelectric Point (pI)

78.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 106
AciI	CCGC	2 cut(s)	106, 161
AclWI	GGATC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	95, 245
AluBI	AGCT	2 cut(s)	27, 280
AluI	AGCT	2 cut(s)	27, 280
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	93, 243
AsiSI	GCGATCGC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	18
BanII	GRGCYC	2 cut(s)	29, 268
Bbv12I	GWGCWC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	2 cut(s)	97, 247
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	97, 247
BmiI	GGNNCC	3 cut(s)	34, 153, 176
BmrFI	CCNGG	2 cut(s)	97, 247
BmsI	GCATC	2 cut(s)	63, 216
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	97, 247
BseGI	GGATG	2 cut(s)	58, 114
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	87, 106
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	95, 245
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	30, 172, 199
BsnI	GGCC	2 cut(s)	95, 245
Bsp1286I	GDGCHC	2 cut(s)	29, 268
Bsp143I	GATC	5 cut(s)	41, 101, 165, 180, 286
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	2 cut(s)	106, 161
BspANI	GGCC	2 cut(s)	95, 245
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	2 cut(s)	87, 106
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	34, 153, 176
BspPI	GGATC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssMI	GATC	5 cut(s)	41, 101, 165, 180, 286
Bst2UI	CCWGG	2 cut(s)	97, 247
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	58, 114
BstFNI	CGCG	2 cut(s)	87, 106
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	5 cut(s)	44, 104, 168, 183, 289
BstMBI	GATC	5 cut(s)	41, 101, 165, 180, 286
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	97, 247
BstSCI	CCNGG	2 cut(s)	95, 245
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	87, 106
BstX2I	RGATCY	2 cut(s)	41, 180
BstYI	RGATCY	2 cut(s)	41, 180
BsuRI	GGCC	2 cut(s)	95, 245
BtsCI	GGATG	2 cut(s)	58, 114
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	171
CviAII	CATG	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	5 cut(s)	43, 103, 167, 182, 288
DpnII	GATC	5 cut(s)	41, 101, 165, 180, 286
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	29, 268
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	95, 245
EcoT38I	GRGCYC	2 cut(s)	29, 268
FaeI	CATG	1 cut(s)	262
FaiI	YATR	1 cut(s)	260
FatI	CATG	1 cut(s)	258
FokI	GGATG	2 cut(s)	65, 121
FriOI	GRGCYC	2 cut(s)	29, 268
GlaI	GCGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	95, 245
HapII	CCGG	3 cut(s)	30, 172, 199
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	89, 212, 305
HpaII	CCGG	3 cut(s)	30, 172, 199
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	86, 178, 184, 259, 269
Hpy99I	CGWCG	2 cut(s)	10, 41
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Kzo9I	GATC	5 cut(s)	41, 101, 165, 180, 286
LmnI	GCTCC	5 cut(s)	32, 38, 151, 180, 277
LpnPI	CCDG	9 cut(s)	43, 82, 109, 185, 191, 212, 232, 254, 259
LweI	GCATC	2 cut(s)	63, 216
MalI	GATC	5 cut(s)	43, 103, 167, 182, 288
MboI	GATC	5 cut(s)	41, 101, 165, 180, 286
MboII	GAAGA	5 cut(s)	73, 79, 82, 124, 142
MflI	RGATCY	2 cut(s)	41, 180
MhlI	GDGCHC	2 cut(s)	29, 268
MlyI	GAGTC	2 cut(s)	206, 314
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	57, 142, 229, 235, 255
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	30, 172, 199
MspR9I	CCNGG	2 cut(s)	97, 247
MvaI	CCWGG	2 cut(s)	97, 247
MvnI	CGCG	2 cut(s)	87, 106
MwoI	GCNNNNNNNGC	1 cut(s)	24
NaeI	GCCGGC	1 cut(s)	173
NdeII	GATC	5 cut(s)	41, 101, 165, 180, 286
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	34, 153, 176
NruI	TCGCGA	1 cut(s)	87
PagI	TCATGA	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	206, 313
PpsI	GAGTC	2 cut(s)	206, 313
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	95, 245
PspGI	CCWGG	2 cut(s)	95, 245
PspN4I	GGNNCC	3 cut(s)	34, 153, 176
PsuI	RGATCY	2 cut(s)	41, 180
PvuI	CGATCG	1 cut(s)	104
RgaI	GCGATCGC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	313
Sau3AI	GATC	5 cut(s)	41, 101, 165, 180, 286
SchI	GAGTC	2 cut(s)	206, 314
ScrFI	CCNGG	2 cut(s)	97, 247
SduI	GDGCHC	2 cut(s)	29, 268
SetI	ASST	3 cut(s)	29, 240, 282
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	63, 216
SfcI	CTRYAG	1 cut(s)	229
SgfI	GCGATCGC	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	2 cut(s)	106, 161
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	95, 245
TaqI	TCGA	5 cut(s)	23, 185, 210, 289, 308
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.