Rh1BG142500

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015815
Physical Location & Seq
Forward (+)
23669949 .. 23677229
7281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG142500.1

Sequence Viewer

Length: 936 bp
ATGGCTGGTGGAGGCGAAGGTGTGACGCTAGAGTTCACTCCAACATGGGTGGTCGCACTAGTATGCTTCATCATAGTCAGCATCTCTCTTTTGGCAGAGAGAGGCCTTCACTCGGCTGGGAAGTACTTCAAGAAGAAGAACCAGAATCCGCTGTATGAGGCATTGCTGAAAGTGAAGGAGGAGCTCATGTTGTTGGGCTTTATCTCTCTGCTACTGACTGTGTCCCAGAAAACCATCACCAAAATGTGCGTCAAAGAGTCATTATATAAGTCGTGGCAGCCATGCAGACCAGATCCCGGTCCCCATAATAGGCCCAAAAACAGTACCCATTTTGAGCTAGAAAGTATTTCTGGGAATTTAAGGAGGCTTCTGGCTGCTGGGGGTGAGGCTCAAGAGGGGTACTGTGCCCAAAAGGGTAAGGTACCATTGTTATCAGTTCAAGCTTTCCATCATCTGCATATCTTTATATTTGTCCTAGCCATCGCTCATGTGACCTTCTCTGCTATGACTATTTGTTTCGGTGGGCTAAAGATACGCCAATGGAAACAGTGGGAGGAGTTGGTTGCAAAAGAGATTGATGATACAGAATCTGCTAAACCAAAGGTCACCCATGTTCAAGACCATGATTTTGTCAAAGATCATTATTTGGGTATTGGTAAAAATTATCGAATCAAGGGTTGGATACATTCTTTTAAAAACCAATTTTATGGATCTGTGACCAAATCAGATTATTTGACTTTGCGTCTAGGCTTCATCTCGACTCATTGCAAGGAAAATCCCAAGTTTGATTTTCACGATTACATGGTGCGTGCGCTTGAAAATGATTTCAAAAAAGTTGTTGGTATCAGTTGGTATCTATGGTTATTCGTAGTCATCTTTCTGCTGATCAATGTTGATGGTATGATTCTTGTTTATATAAAAATTGATCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

311

Amino Acids

35.51

Weight (kDa)

9.11

Isoelectric Point (pI)

20.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 9 - 303 1e-109 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015815)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08130 FvH4_7g08130
malus_domestica MD02G1230200.v1.1 MD07G1082000.v1.1
prunus_persica Prupe.2G107600_v2.0.a1 Prupe.2G107600_v2.0.a1
pyrus_communis pycom07g06530
rosa_chinensis RchiOBHm_Chr1g0341101
rosa_laevigata RLG00000029064
rosa_multiflora Rmu_sc0001211.1_g000067
rosa_rugosa Rorug01G0159900.1
rosa_samantha Rh1AG174200 Rh1BG142500 Rh1CG162000
rosa_wichuraiana Rw1G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 421
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 287, 718
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 4 cut(s) 125, 325, 401, 423
AfiI CCNNNNNNNGG 3 cut(s) 112, 296, 309
AgsI TTSAA 5 cut(s) 130, 440, 617, 818, 829
AhdI GACNNNNNGTC 1 cut(s) 741
AhlI ACTAGT 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
AluBI AGCT 3 cut(s) 184, 337, 443
AluI AGCT 3 cut(s) 184, 337, 443
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 2 cut(s) 287, 718
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 2 cut(s) 103, 311
ApeKI GCWGC 2 cut(s) 277, 374
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 4 cut(s) 234, 266, 611, 643
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 421
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 299, 312
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 229, 395, 598
AvaII GGWCC 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 289, 361
BccI CCATC 4 cut(s) 242, 456, 488, 890
BciVI GTATCC 1 cut(s) 675
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 1 cut(s) 297
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 5 cut(s) 29, 59, 338, 476, 746
BfuI GTATCC 1 cut(s) 675
BisI GCNGC 2 cut(s) 278, 375
BlsI GCNGC 2 cut(s) 279, 376
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 741
BmgT120I GGNCC 2 cut(s) 299, 312
BmiI GGNNCC 2 cut(s) 301, 423
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 296, 309
Bse3DI GCAATG 2 cut(s) 161, 763
BseLI CCNNNNNNNGG 3 cut(s) 112, 296, 309
BseMI GCAATG 2 cut(s) 161, 763
BseRI GAGGAG 2 cut(s) 194, 569
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 2 cut(s) 289, 361
BseYI CCCAGC 2 cut(s) 116, 377
BshFI GGCC 2 cut(s) 105, 313
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 208, 285
BslI CCNNNNNNNGG 3 cut(s) 112, 296, 309
BsmFI GGGAC 2 cut(s) 208, 285
BsnI GGCC 2 cut(s) 105, 313
Bsp1286I GDGCHC 2 cut(s) 186, 409
Bsp143I GATC 5 cut(s) 292, 637, 710, 885, 925
BspACI CCGC 1 cut(s) 149
BspANI GGCC 2 cut(s) 105, 313
BspLI GGNNCC 2 cut(s) 301, 423
BspPI GGATC 2 cut(s) 287, 718
BspT107I GGYRCC 1 cut(s) 421
BsrDI GCAATG 2 cut(s) 161, 763
BssMI GATC 5 cut(s) 292, 637, 710, 885, 925
Bst4CI ACNGT 4 cut(s) 220, 323, 404, 549
BstC8I GCNNGC 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 604
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 5 cut(s) 295, 640, 713, 888, 928
BstMBI GATC 5 cut(s) 292, 637, 710, 885, 925
BstPI GGTNACC 1 cut(s) 604
BstSCI CCNGG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 289, 361
BstX2I RGATCY 2 cut(s) 292, 710
BstXI CCANNNNNNTGG 1 cut(s) 707
BstYI RGATCY 2 cut(s) 292, 710
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 2 cut(s) 105, 313
BtgZI GCGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 1 cut(s) 810
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 299, 312
CseI GACGC 3 cut(s) 34, 238, 731
Csp6I GTAC 4 cut(s) 124, 324, 400, 422
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 7 cut(s) 45, 187, 282, 488, 611, 623, 802
CviQI GTAC 4 cut(s) 124, 324, 400, 422
DpnI GATC 5 cut(s) 294, 639, 712, 887, 927
DpnII GATC 5 cut(s) 292, 637, 710, 885, 925
DraI TTTAAA 1 cut(s) 694
DriI GACNNNNNGTC 1 cut(s) 741
Eam1105I GACNNNNNGTC 1 cut(s) 741
Ecl136II GAGCTC 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 7 cut(s) 48, 190, 285, 491, 614, 626, 805
FaqI GGGAC 2 cut(s) 208, 285
FatI CATG 7 cut(s) 44, 186, 281, 487, 610, 622, 801
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 2 cut(s) 278, 375
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 278, 375
FspBI CTAG 5 cut(s) 29, 59, 338, 476, 746
GlaI GCGC 1 cut(s) 813
GluI GCNGC 2 cut(s) 278, 375
GsaI CCCAGC 2 cut(s) 120, 381
HaeIII GGCC 2 cut(s) 105, 313
HapII CCGG 1 cut(s) 297
HgaI GACGC 3 cut(s) 34, 238, 731
HhaI GCGC 1 cut(s) 814
Hin1II CATG 7 cut(s) 48, 190, 285, 491, 614, 626, 805
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 6 cut(s) 145, 257, 587, 669, 760, 904
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 229, 395, 598
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 727
Hpy188III TCNNGA 5 cut(s) 130, 392, 617, 757, 794
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 4 cut(s) 11, 116, 169, 505
HpyCH4III ACNGT 4 cut(s) 220, 323, 404, 549
HpyCH4V TGCA 4 cut(s) 285, 457, 566, 768
Hsp92II CATG 7 cut(s) 48, 190, 285, 491, 614, 626, 805
HspAI GCGC 1 cut(s) 812
KpnI GGTACC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 5 cut(s) 292, 637, 710, 885, 925
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 102, 155, 239, 303, 310, 336, 356, 363
Lsp1109I GCAGC 2 cut(s) 289, 361
LweI GCATC 1 cut(s) 90
MaeI CTAG 5 cut(s) 29, 59, 338, 476, 746
MaeIII GTNAC 4 cut(s) 22, 490, 604, 715
MalI GATC 5 cut(s) 294, 639, 712, 887, 927
MboI GATC 5 cut(s) 292, 637, 710, 885, 925
MboII GAAGA 2 cut(s) 145, 148
MflI RGATCY 2 cut(s) 292, 710
MhlI GDGCHC 2 cut(s) 186, 409
MluCI AATT 4 cut(s) 355, 661, 701, 921
MlyI GAGTC 2 cut(s) 266, 754
MmeI TCCRAC 2 cut(s) 65, 659
MnlI CCTC 8 cut(s) 5, 95, 151, 172, 357, 379, 388, 547
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 359, 693
MslI CAYNNNNRTG 2 cut(s) 61, 242
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 297
NciI CCSGG 1 cut(s) 297
NdeII GATC 5 cut(s) 292, 637, 710, 885, 925
NlaIII CATG 7 cut(s) 48, 190, 285, 491, 614, 626, 805
NlaIV GGNNCC 2 cut(s) 301, 423
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 4 cut(s) 22, 490, 604, 715
PceI AGGCCT 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 4 cut(s) 145, 587, 669, 904
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 279, 376
PleI GAGTC 2 cut(s) 265, 754
PpsI GAGTC 2 cut(s) 265, 754
Psp124BI GAGCTC 1 cut(s) 186
PspEI GGTNACC 1 cut(s) 604
PspFI CCCAGC 2 cut(s) 116, 377
PspN4I GGNNCC 2 cut(s) 301, 423
PspPI GGNCC 2 cut(s) 299, 312
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 292, 710
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 4 cut(s) 125, 325, 401, 423
RsaNI GTAC 4 cut(s) 124, 324, 400, 422
RseI CAYNNNNRTG 2 cut(s) 61, 242
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 359, 693
SatI GCNGC 2 cut(s) 278, 375
Sau3AI GATC 5 cut(s) 292, 637, 710, 885, 925
Sau96I GGNCC 2 cut(s) 299, 312
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 2 cut(s) 266, 754
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 2 cut(s) 186, 409
SetI ASST 7 cut(s) 22, 186, 339, 423, 445, 497, 606
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 61, 242
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 4 cut(s) 355, 661, 701, 921
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 1 cut(s) 149
SspMI CTAG 5 cut(s) 29, 59, 338, 476, 746
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 220, 323, 404, 549
TaqI TCGA 2 cut(s) 667, 758
TasI AATT 4 cut(s) 355, 661, 701, 921
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 4 cut(s) 145, 587, 669, 904
Tru1I TTAA 2 cut(s) 359, 693
Tru9I TTAA 2 cut(s) 359, 693
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 4 cut(s) 22, 490, 604, 715
TseI GCWGC 2 cut(s) 277, 374
Tsp45I GTSAC 4 cut(s) 22, 490, 604, 715
TspDTI ATGAA 2 cut(s) 58, 742
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 5 cut(s) 29, 59, 338, 476, 746
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.