Rh2AG413800

Sigma factor PP2C-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018325
Physical Location & Seq
Forward (+)
61446070 .. 61454161
8092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG413800.1

Sequence Viewer

Length: 783 bp
ATGGCACCAATCACCAACGACAACTCCACCGCTATGCCGACAATGACGGACTCCGGCAACACCACCACCACCACCACCAACCTCCCTCCAACCCCAACACCATTCGAAACTCTCATCCCCAATGCCGAGATTCCCGAAAGCTCATCATCTGCAGCTGCTTCACCAAAGAGTGAAGGTGCAAGCACTGAACCAGAACCCAAAGCCGTCGCGGCGGCCACTGAGTCCTCTGAAAGCAGCGGCAGCAGAAGCAATGGCGGCGAGGTGGTTTTTGTGGGGAGGAAGAACAGGGCCGTGTCGTGGGGTTACAGCTTGAACATAGGAAGGAGACGAGAAATGGAAGACACCCTTACCATTGTTCCTTCTTTTATGAAAATTCCCTGTGCTTCTGTCGGCGGGTGTACAGCGCCGGGGTGTAGGTACGTCACGGAGGAGTCGTCGGTTCACTACTTCGGTTTGTTTGATGGCCACGGCGGCTCTGAGGCAACAGAAGAAAGCCTCCATGAACTGTTGGCAGAGGAGTGGGAAAAAGGAAGCGGTGAAGATCAGTGGAATAAAAGGTGGATGGGAGCCCTTGTTAGGGCTTACAACAGAGCAGATGATGCTTTTATAGACAAGACATTAGCACCAGATACAGTTGGATTGACAGCTGTGGTAGTGATTCTGTCAGCCTGTCAGATCATTGTTGCCAATTGCGGTGACTCTAGGGCTGTGCTTTGTTGTGGAAATCAAGTGATCCCATTGACTGTCGACCACAAGCCTGACAGAGACGATGGAAGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

260

Amino Acids

27.52

Weight (kDa)

4.64

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 107 - 256 8.6e-20 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17545
rosa_chinensis RchiOBHm_Chr2g0140491
rosa_laevigata RLG00000019871
rosa_rugosa Rorug02G0363300
rosa_samantha Rh2AG413800 Rh2AG413900 Rh2BG424000 Rh2CG400200 Rh2CG400300 Rh2DG433700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 747
AccII CGCG 1 cut(s) 209
AciI CCGC 9 cut(s) 30, 209, 212, 237, 255, 393, 471, 534, 693
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 213, 463
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 2 cut(s) 400, 419
AfiI CCNNNNNNNGG 3 cut(s) 297, 576, 577
AgsI TTSAA 1 cut(s) 313
AluBI AGCT 4 cut(s) 141, 155, 309, 647
AluI AGCT 4 cut(s) 141, 155, 309, 647
Alw26I GTCTC 2 cut(s) 319, 759
AlwI GGATC 1 cut(s) 727
AoxI GGCC 3 cut(s) 213, 288, 463
ApeKI GCWGC 4 cut(s) 152, 155, 234, 240
ApoI RAATTY 1 cut(s) 372
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 4 cut(s) 4, 153, 548, 707
AsuII TTCGAA 1 cut(s) 105
BalI TGGCCA 1 cut(s) 465
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 142, 164, 246, 252
BccI CCATC 3 cut(s) 455, 556, 764
BceAI ACGGC 3 cut(s) 188, 275, 484
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 319, 759
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 407
BglI GCCNNNNNGGC 2 cut(s) 209, 471
BisI GCNGC 9 cut(s) 153, 156, 210, 213, 235, 238, 241, 256, 472
BlsI GCNGC 9 cut(s) 154, 157, 211, 214, 236, 239, 242, 257, 473
Bme1390I CCNGG 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 6, 568
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 407, 466
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 419, 449, 558, 588
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 576, 577
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 407, 466
BseGI GGATG 2 cut(s) 114, 567
BseLI CCNNNNNNNGG 3 cut(s) 297, 576, 577
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 210, 468
BseRI GAGGAG 2 cut(s) 443, 530
BseXI GCAGC 4 cut(s) 142, 164, 246, 252
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 3 cut(s) 215, 290, 465
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 54, 407
BslI CCNNNNNNNGG 3 cut(s) 297, 576, 577
BsmAI GTCTC 2 cut(s) 319, 759
BsmBI CGTCTC 2 cut(s) 319, 759
BsnI GGCC 3 cut(s) 215, 290, 465
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 571
Bsp1407I TGTACA 1 cut(s) 398
Bsp143I GATC 3 cut(s) 541, 675, 732
BspACI CCGC 9 cut(s) 30, 209, 212, 237, 255, 393, 471, 534, 693
BspANI GGCC 3 cut(s) 215, 290, 465
BspCNI CTCAG 2 cut(s) 211, 469
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 6, 568
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 407, 466
BssMI GATC 3 cut(s) 541, 675, 732
Bst4CI ACNGT 3 cut(s) 507, 634, 745
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 219, 477
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 114, 567
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 544, 678, 735
BstMAI GTCTC 2 cut(s) 319, 759
BstMBI GATC 3 cut(s) 541, 675, 732
BstMWI GCNNNNNNNGC 6 cut(s) 209, 240, 246, 255, 471, 599
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 4 cut(s) 142, 164, 246, 252
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 3 cut(s) 215, 290, 465
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 114, 567
BtsIMutI CAGTG 3 cut(s) 183, 216, 551
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 399, 418
CviAII CATG 1 cut(s) 500
CviQI GTAC 2 cut(s) 399, 418
DdeI CTNAG 2 cut(s) 219, 477
DpnI GATC 3 cut(s) 543, 677, 734
DpnII GATC 3 cut(s) 541, 675, 732
EaeI YGGCCR 2 cut(s) 213, 463
Eco24I GRGCYC 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 571
Esp3I CGTCTC 2 cut(s) 319, 759
FaeI CATG 1 cut(s) 503
FaiI YATR 5 cut(s) 35, 317, 368, 501, 608
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 1 cut(s) 499
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 9 cut(s) 153, 156, 210, 213, 235, 238, 241, 256, 472
FokI GGATG 2 cut(s) 101, 574
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 9 cut(s) 153, 156, 210, 213, 235, 238, 241, 256, 472
FspBI CTAG 1 cut(s) 702
GlaI GCGC 1 cut(s) 405
GluI GCNGC 9 cut(s) 153, 156, 210, 213, 235, 238, 241, 256, 472
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 3 cut(s) 215, 290, 465
HapII CCGG 2 cut(s) 54, 407
HhaI GCGC 1 cut(s) 406
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 6 cut(s) 50, 130, 221, 431, 658, 698
HpaII CCGG 2 cut(s) 54, 407
HphI GGTGA 4 cut(s) 4, 153, 548, 707
Hpy166II GTNNAC 3 cut(s) 399, 442, 748
Hpy188I TCNGA 3 cut(s) 229, 478, 675
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 3 cut(s) 399, 442, 748
Hpy99I CGWCG 2 cut(s) 209, 439
HpyAV CCTTC 3 cut(s) 167, 315, 369
HpyCH4III ACNGT 3 cut(s) 507, 634, 745
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 152, 179
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 240, 246, 255, 471, 599
HpyF3I CTNAG 2 cut(s) 219, 477
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 541, 675, 732
LmnI GCTCC 1 cut(s) 566
LpnPI CCDG 8 cut(s) 67, 204, 271, 391, 420, 639, 682, 771
Lsp1109I GCAGC 4 cut(s) 142, 164, 246, 252
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 302, 421, 695
MalI GATC 3 cut(s) 543, 677, 734
MboI GATC 3 cut(s) 541, 675, 732
MboII GAAGA 4 cut(s) 292, 350, 500, 551
MfeI CAATTG 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 3 cut(s) 372, 688, 778
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 4 cut(s) 44, 230, 440, 692
MmeI TCCRAC 2 cut(s) 113, 616
MnlI CCTC 9 cut(s) 92, 96, 235, 253, 270, 421, 472, 506, 508
Mox20I TGGCCA 1 cut(s) 465
MscI TGGCCA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 3 cut(s) 155, 237, 647
MspI CCGG 2 cut(s) 54, 407
MspR9I CCNGG 1 cut(s) 408
MunI CAATTG 1 cut(s) 688
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 6 cut(s) 209, 240, 246, 255, 471, 599
NciI CCSGG 1 cut(s) 408
NdeII GATC 3 cut(s) 541, 675, 732
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 2 cut(s) 6, 568
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 421, 695
NspV TTCGAA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PfeI GAWTC 2 cut(s) 130, 658
PkrI GCNGC 9 cut(s) 154, 157, 211, 214, 236, 239, 242, 257, 473
PleI GAGTC 4 cut(s) 44, 229, 439, 692
PpsI GAGTC 4 cut(s) 44, 229, 439, 692
PspN4I GGNNCC 2 cut(s) 6, 568
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 154
PvuII CAGCTG 2 cut(s) 155, 647
RsaI GTAC 2 cut(s) 400, 419
RsaNI GTAC 2 cut(s) 399, 418
RseI CAYNNNNRTG 1 cut(s) 32
SalI GTCGAC 1 cut(s) 746
SatI GCNGC 9 cut(s) 153, 156, 210, 213, 235, 238, 241, 256, 472
Sau3AI GATC 3 cut(s) 541, 675, 732
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 4 cut(s) 44, 230, 440, 692
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 3 cut(s) 372, 688, 778
SsiI CCGC 9 cut(s) 30, 209, 212, 237, 255, 393, 471, 534, 693
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 507, 634, 745
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 105, 747
TasI AATT 3 cut(s) 372, 688, 778
TatI WGTACW 1 cut(s) 398
TauI GCSGC 5 cut(s) 212, 215, 240, 258, 474
TfiI GAWTC 2 cut(s) 130, 658
TscAI CASTG 3 cut(s) 190, 223, 551
TseFI GTSAC 2 cut(s) 421, 695
TseI GCWGC 4 cut(s) 152, 155, 234, 240
Tsp45I GTSAC 2 cut(s) 421, 695
TspDTI ATGAA 2 cut(s) 383, 516
TspGWI ACGGA 2 cut(s) 62, 440
TspRI CASTG 3 cut(s) 190, 223, 551
XapI RAATTY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 747
XspI CTAG 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.