Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003362

Physical Location & Seq

Genomic Coordinates Forward (+)

67591990 .. 67598765

Gene Structure 6776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG459800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGAGGACGACGGGTCGTATAAACGGGGTAGGAAGAAAATGGGTATGTCTAGAAAGCCAGAAAAACAAGGTCAAGGTCAAGGTCAAGGTCAAGGTCGGTCCTTTGATGCTGGTGTTCGTAAAACTGCATCCGGGCGGGGCTCGAATCGGGAGAGCTATTCGGCACCGCAGACTGTTGTGAGGAAACAGGTTGACCCCGAAACCGCAAAGTACTTTTCGGAGATTGCTAACCTTTTCGAGAGTGATGGGATTGATATTGAGGAGCGGTCGTCTTTATGTAGTAATGCACTTGAAGAAACTAGGGGGAAAGAGCTGGAGCTTGCGACGGATTATATTATTAGTCACACTTTGCAGACTCTAGTTGAGGGCTGTGAAGTTGATTGCCTTTGTGCTTTTCTCCGAAGCTGTGCGAAGAACTTCCCTTTGATTGCAATGGATAAGTCTGGATCTCATGTAGCTGAGTCTGCCATCAGGGCTTTATCTAAGCATCTTCAGGAGAGTGATGCGTATGCCGTTATTGAGGACACTCTAAATACAATCTGCAAGGTGATTGTGAAGAATCCTGTTGATCTGATGTGTGATTGTTACGGATCTCATGTTCTACGAAGTCTTCTCTCTCTTTTTAAAGGAGTGCCATTGGATTCTTCTGAGTTCCGAATGAGGAAGTCATCTTCTGCCCTACCAGAACGGTTTAATTTCAAGGCACCTCGATCAGACACAGATGTTTCACCACATGTTAGACCTGGATTCCCGGATTTACTTAAGTTTCTTGTTTCCGGGATGTTAAAATGTGCTCGAAACAACATTAAAACCCTGCAAGTTGATCAGTACAGCAGTTTGGTTCTACAGACTACTCTGAAGTTGTTAGCAGGGGATGAAGAAGAGCTGATGCAAATAATTCCCATTCTTATTGGATGTACCAGGGAAGATATTGTAGAGGAGAACTCCATTGAACCAACTATCGTGAGAGATGTTTTAGGTTTGATGAAAGAAACAGCATTTAGCCATTTAATGGAGGTTGTTTTGGAAGTAGCTCCTGAAGTCTTGTACAATGGAATCTTCTCAAAGATCTTCAGGAACTCTTTATTTGACCTTTCGTCCCATCATTGTGGGAATTTTGTCATCCAAGCACTTATTTCTCATACAAGGGATCAGGATCAAATGGAGATAATCTGGGAGGAACTTGGTTCGAATTTCAAGGATCTGCTTAAAATGGGAAGATCTGGTGTTATTGCTTCGCTTATCGCTGCAAGTCAAAGGCTTCATAGTTACGAACACAAGTGTTGTCAGGCTCTTGCTGCTGCAGTATATTCAAGCAGTGAGTCTTCAACATGCATTGTTCCCCGTATACTGTTTCTTGATAGCTACTTCAATTGTGAAGATAAGTCTAATTGGAGTTGGCCAAGTGGTGTTAAAATGCACGTCATGGGTTCTTTGATACTGCAAGAAGTTTTTCGATTTCAAATTGAATTTATACAGCCTTTTATTACAAGTATTACATCCATCACAGCTGATAATGTCCTTGAAGCTGCTAAGGATCCAGGGGGTGCTCGTGTTATTGAAGCATTTTTAAGTTCTAATGCTTCTGCAAAACTGAAACGCCGATTAGTTATGAGGCTTCGTGGACATTTTGGAGAGCTAGCATTGCACTCGTCAGGTTCCTTTACTGTTGAAAAGTGCTTTACTACTGGTAACATTTCACAGAGGGAAGCCATAGTATCTGAGTTGGTAACCGTGCAAAGTGAGCTTTGGAATACAAGGCAAGGTCCTCATCTTATGAGGAAACTAGATGTTGATGGATTTGCTGCTAGACCTGAGCAGTGGAGGTCCAGACAAGAATCAAAGCAATCAACTTTGAGAGACTTTTCTGCTACATTTGGCTCTAGTGAGACCAAACCATCAAACAATAGTGAGACTGAGCAATCAAAGAAGAGCAGCTTTCTTTCTGATGATTATAAGAAAAAATCAAAAGTGGGAAAAACAGTTGACCATCACCAGGCATCTCCTGCACCATTTTTGAGTACAACAGGCTTCAAACGTAAGCCCAAGGAAAAAGAACAGAGCAACAAGAAGTTTGCAAGAGTCTCGGTAGATGAGGATGTTTCTAAAGTGAAGAATAAGTCAAAGAAGAAAAGGCATGGTGACGATGCTTTTTCTAAATCCCCCAAGAAGTTGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0010033 GO:0010252 GO:0031974 GO:0031981 GO:0034284 GO:0034285 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

727

Amino Acids

81.15

Weight (kDa)

8.59

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF_NOP9	PF22493	102 - 586	2.1e-67	NOP9-like PUF repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72320 AT1G72320 AT1G72320 AT1G72320
fragaria_vesca	FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860 FvH4_6g35860
malus_domestica	MD09G1172500.v1.1
prunus_persica	Prupe.3G030900_v2.0.a1 Prupe.3G030900_v2.0.a1 Prupe.3G030900_v2.0.a1 Prupe.3G030900_v2.0.a1 Prupe.3G030900_v2.0.a1 Prupe.3G030900_v2.0.a1
pyrus_communis	pycom09g09000
rosa_chinensis	RchiOBHm_Chr2g0147901
rosa_laevigata	RLG00000020291
rosa_multiflora	Rmu_sc0000308.1_g000059
rosa_roxburghii	Rroxscaffold_2G00099210
rosa_rugosa	Rorug02G0402900
rosa_samantha	Rh2AG459800 Rh2BG473100 Rh2CG447100 Rh2DG482000
rosa_wichuraiana	Rw2G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1956
AccB1I	GGYRCC	2 cut(s)	163, 703
AccB7I	CCANNNNNTGG	1 cut(s)	1012
AccBSI	CCGCTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	1348
AciI	CCGC	4 cut(s)	136, 167, 204, 265
AclWI	GGATC	7 cut(s)	454, 598, 1158, 1164, 1209, 1532, 1545
AcoI	YGGCCR	1 cut(s)	1400
AcsI	RAATTY	3 cut(s)	1114, 1192, 1469
AcuI	CTGAAG	4 cut(s)	476, 878, 1057, 1059
AfaI	GTAC	5 cut(s)	212, 830, 919, 1049, 2023
AfiI	CCNNNNNNNGG	2 cut(s)	1012, 1996
AflII	CTTAAG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	733
AhdI	GACNNNNNGTC	2 cut(s)	13, 1096
AjiI	CACGTC	1 cut(s)	1423
AjnI	CCWGG	4 cut(s)	742, 920, 1540, 1995
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
Alw21I	GWGCWC	2 cut(s)	796, 1552
Alw26I	GTCTC	4 cut(s)	1854, 1883, 1907, 2089
AlwI	GGATC	7 cut(s)	454, 598, 1158, 1164, 1209, 1532, 1545
AoxI	GGCC	1 cut(s)	1400
ApeKI	GCWGC	6 cut(s)	1247, 1298, 1301, 1529, 1805, 1935
ApoI	RAATTY	3 cut(s)	1114, 1192, 1469
Asp700I	GAANNNNTTC	2 cut(s)	416, 1452
AspS9I	GGNCC	3 cut(s)	99, 1766, 1827
AsuC2I	CCSGG	3 cut(s)	133, 752, 778
AsuHPI	GGTGA	4 cut(s)	559, 720, 1985, 2153
AsuII	TTCGAA	1 cut(s)	1190
AsuNHI	GCTAGC	1 cut(s)	1639
AvaII	GGWCC	3 cut(s)	99, 1766, 1827
BalI	TGGCCA	1 cut(s)	1402
BamHI	GGATCC	1 cut(s)	1537
BanI	GGYRCC	2 cut(s)	163, 703
BanII	GRGCYC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	1551
BbsI	GAAGAC	2 cut(s)	602, 1317
Bbv12I	GWGCWC	2 cut(s)	796, 1552
BbvI	GCAGC	6 cut(s)	1234, 1285, 1288, 1516, 1792, 1947
BccI	CCATC	7 cut(s)	239, 476, 1110, 1511, 1790, 1906, 1998
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	4 cut(s)	1632, 1666, 2067, 2101
BciT130I	CCWGG	4 cut(s)	744, 922, 1542, 1997
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	3 cut(s)	133, 752, 778
BcoDI	GTCTC	4 cut(s)	1854, 1883, 1907, 2089
BfaI	CTAG	7 cut(s)	51, 300, 359, 1640, 1787, 1809, 1884
BfmI	CTRYAG	2 cut(s)	845, 1302
BfrI	CTTAAG	1 cut(s)	761
BglI	GCCNNNNNGGC	1 cut(s)	473
BglII	AGATCT	2 cut(s)	1068, 1220
BisI	GCNGC	6 cut(s)	1248, 1299, 1302, 1530, 1806, 1936
BlsI	GCNGC	6 cut(s)	1249, 1300, 1303, 1531, 1807, 1937
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	7 cut(s)	133, 744, 752, 778, 922, 1542, 1997
Bme18I	GGWCC	3 cut(s)	99, 1766, 1827
BmeRI	GACNNNNNGTC	2 cut(s)	13, 1096
BmgBI	CACGTC	1 cut(s)	1423
BmgT120I	GGNCC	3 cut(s)	99, 1766, 1827
BmiI	GGNNCC	4 cut(s)	165, 705, 1539, 1660
BmrFI	CCNGG	7 cut(s)	133, 744, 752, 778, 922, 1542, 1997
BmsI	GCATC	7 cut(s)	97, 137, 493, 496, 879, 2009, 2137
BmtI	GCTAGC	1 cut(s)	1643
BpiI	GAAGAC	2 cut(s)	602, 1317
BplI	GAGNNNNNCTC	2 cut(s)	929, 961
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	2 cut(s)	1533, 1815
Bpu14I	TTCGAA	1 cut(s)	1190
BpuMI	CCSGG	3 cut(s)	133, 752, 778
BsaBI	GATNNNNATC	1 cut(s)	1155
BsaI	GGTCTC	1 cut(s)	1883
BsaJI	CCNNGG	3 cut(s)	921, 1541, 2046
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	1012, 1996
Bse1I	ACTGG	1 cut(s)	1693
Bse3DI	GCAATG	2 cut(s)	438, 1643
Bse8I	GATNNNNATC	1 cut(s)	1155
BseBI	CCWGG	4 cut(s)	744, 922, 1542, 1997
BseDI	CCNNGG	3 cut(s)	921, 1541, 2046
BseGI	GGATG	7 cut(s)	128, 786, 880, 920, 1122, 1499, 2104
BseJI	GATNNNNATC	1 cut(s)	1155
BseLI	CCNNNNNNNGG	2 cut(s)	1012, 1996
BseMI	GCAATG	2 cut(s)	438, 1643
BseMII	CTCAG	5 cut(s)	450, 639, 1713, 1806, 1908
BseNI	ACTGG	1 cut(s)	1693
BseRI	GAGGAG	2 cut(s)	275, 953
BseXI	GCAGC	6 cut(s)	1234, 1285, 1288, 1516, 1792, 1947
BsgI	GTGCAG	1 cut(s)	1992
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	1402
BshNI	GGYRCC	2 cut(s)	163, 703
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	796, 1552
BsiSI	CCGG	3 cut(s)	132, 752, 777
BslFI	GGGAC	1 cut(s)	1084
BslI	CCNNNNNNNGG	2 cut(s)	1012, 1996
BsmAI	GTCTC	4 cut(s)	1854, 1883, 1907, 2089
BsmFI	GGGAC	1 cut(s)	1084
BsnI	GGCC	1 cut(s)	1402
Bso31I	GGTCTC	1 cut(s)	1883
Bsp119I	TTCGAA	1 cut(s)	1190
Bsp1286I	GDGCHC	3 cut(s)	143, 796, 1552
Bsp1407I	TGTACA	1 cut(s)	1047
BspACI	CCGC	4 cut(s)	136, 167, 204, 265
BspANI	GGCC	1 cut(s)	1402
BspCNI	CTCAG	5 cut(s)	451, 640, 1714, 1807, 1909
BspLI	GGNNCC	4 cut(s)	165, 705, 1539, 1660
BspMAI	CTGCAG	1 cut(s)	1306
BspOI	GCTAGC	1 cut(s)	1643
BspPI	GGATC	7 cut(s)	454, 598, 1158, 1164, 1209, 1532, 1545
BspQI	GCTCTTC	2 cut(s)	876, 1925
BspT104I	TTCGAA	1 cut(s)	1190
BspT107I	GGYRCC	2 cut(s)	163, 703
BspTI	CTTAAG	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	1883
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	438, 1643
BsrGI	TGTACA	1 cut(s)	1047
BsrI	ACTGG	1 cut(s)	1693
BssECI	CCNNGG	3 cut(s)	921, 1541, 2046
BssNAI	GTATAC	1 cut(s)	1349
BssSI	CACGAG	1 cut(s)	1551
BssT1I	CCWWGG	1 cut(s)	2046
Bst1107I	GTATAC	1 cut(s)	1349
Bst2BI	CACGAG	1 cut(s)	1551
Bst2UI	CCWGG	4 cut(s)	744, 922, 1542, 1997
Bst4CI	ACNGT	6 cut(s)	175, 690, 1353, 1669, 1735, 1984
Bst6I	CTCTTC	2 cut(s)	876, 1925
BstAFI	CTTAAG	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	2006
BstAUI	TGTACA	1 cut(s)	1047
BstBI	TTCGAA	1 cut(s)	1190
BstC8I	GCNNGC	2 cut(s)	321, 1641
BstDEI	CTNAG	7 cut(s)	459, 483, 648, 1533, 1722, 1815, 1917
BstEII	GGTNACC	1 cut(s)	1729
BstF5I	GGATG	7 cut(s)	128, 786, 880, 920, 1122, 1499, 2104
BstMAI	GTCTC	4 cut(s)	1854, 1883, 1907, 2089
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	6 cut(s)	464, 473, 1298, 1645, 1744, 2006
BstNI	CCWGG	4 cut(s)	744, 922, 1542, 1997
BstNSI	RCATGY	2 cut(s)	737, 1335
BstPI	GGTNACC	1 cut(s)	1729
BstSCI	CCNGG	7 cut(s)	131, 742, 750, 776, 920, 1540, 1995
BstSFI	CTRYAG	2 cut(s)	845, 1302
BstV1I	GCAGC	6 cut(s)	1234, 1285, 1288, 1516, 1792, 1947
BstV2I	GAAGAC	2 cut(s)	602, 1317
BstX2I	RGATCY	6 cut(s)	446, 590, 1068, 1201, 1220, 1537
BstXI	CCANNNNNNTGG	1 cut(s)	1109
BstYI	RGATCY	6 cut(s)	446, 590, 1068, 1201, 1220, 1537
BstZ17I	GTATAC	1 cut(s)	1349
BsuRI	GGCC	1 cut(s)	1402
BtrI	CACGTC	1 cut(s)	1423
BtsCI	GGATG	7 cut(s)	128, 786, 880, 920, 1122, 1499, 2104
BtsI	GCAGTG	2 cut(s)	1324, 1826
BtsIMutI	CAGTG	2 cut(s)	1324, 1826
Cac8I	GCNNGC	2 cut(s)	321, 1641
Cfr13I	GGNCC	3 cut(s)	99, 1766, 1827
Csp6I	GTAC	5 cut(s)	211, 829, 918, 1048, 2022
CviAII	CATG	7 cut(s)	452, 596, 734, 1332, 1426, 2138, 2181
CviQI	GTAC	5 cut(s)	211, 829, 918, 1048, 2022
DdeI	CTNAG	7 cut(s)	459, 483, 648, 1533, 1722, 1815, 1917
DraI	TTTAAA	1 cut(s)	625
DriI	GACNNNNNGTC	2 cut(s)	13, 1096
EaeI	YGGCCR	1 cut(s)	1400
Eam1104I	CTCTTC	2 cut(s)	876, 1925
Eam1105I	GACNNNNNGTC	2 cut(s)	13, 1096
EarI	CTCTTC	2 cut(s)	876, 1925
Eco130I	CCWWGG	1 cut(s)	2046
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	1883
Eco47I	GGWCC	3 cut(s)	99, 1766, 1827
Eco57I	CTGAAG	4 cut(s)	476, 878, 1057, 1059
Eco91I	GGTNACC	1 cut(s)	1729
EcoO109I	RGGNCCY	1 cut(s)	1766
EcoO65I	GGTNACC	1 cut(s)	1729
EcoRII	CCWGG	4 cut(s)	742, 920, 1540, 1995
EcoT14I	CCWWGG	1 cut(s)	2046
EcoT22I	ATGCAT	1 cut(s)	1337
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	2046
FaeI	CATG	7 cut(s)	455, 599, 737, 1335, 1429, 2141, 2184
FalI	AAGNNNNNCTT	2 cut(s)	1922, 1954
FaqI	GGGAC	1 cut(s)	1084
FatI	CATG	7 cut(s)	451, 595, 733, 1331, 1425, 2137, 2180
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	1348
Fnu4HI	GCNGC	6 cut(s)	1248, 1299, 1302, 1530, 1806, 1936
FokI	GGATG	7 cut(s)	115, 793, 887, 927, 1109, 1486, 2111
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	6 cut(s)	1248, 1299, 1302, 1530, 1806, 1936
FspBI	CTAG	7 cut(s)	51, 300, 359, 1640, 1787, 1809, 1884
GluI	GCNGC	6 cut(s)	1248, 1299, 1302, 1530, 1806, 1936
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	1402
HapII	CCGG	3 cut(s)	132, 752, 777
Hin1II	CATG	7 cut(s)	455, 599, 737, 1335, 1429, 2141, 2184
HincII	GTYRAC	2 cut(s)	193, 1987
HindII	GTYRAC	2 cut(s)	193, 1987
HpaII	CCGG	3 cut(s)	132, 752, 777
HphI	GGTGA	4 cut(s)	559, 720, 1985, 2153
Hpy166II	GTNNAC	4 cut(s)	193, 1349, 1625, 1987
Hpy188I	TCNGA	9 cut(s)	220, 401, 573, 649, 656, 715, 858, 1723, 1948
Hpy8I	GTNNAC	4 cut(s)	193, 1349, 1625, 1987
Hpy99I	CGWCG	2 cut(s)	14, 328
HpyCH4III	ACNGT	6 cut(s)	175, 690, 1353, 1669, 1735, 1984
HpyCH4IV	ACGT	2 cut(s)	1422, 2038
HpyF10VI	GCNNNNNNNGC	6 cut(s)	464, 473, 1298, 1645, 1744, 2006
HpyF3I	CTNAG	7 cut(s)	459, 483, 648, 1533, 1722, 1815, 1917
HpySE526I	ACGT	2 cut(s)	1422, 2038
Hsp92II	CATG	7 cut(s)	455, 599, 737, 1335, 1429, 2141, 2184
Ksp22I	TGATCA	1 cut(s)	823
LguI	GCTCTTC	2 cut(s)	876, 1925
LmnI	GCTCC	3 cut(s)	262, 316, 1039
Lsp1109I	GCAGC	6 cut(s)	1234, 1285, 1288, 1516, 1792, 1947
LweI	GCATC	7 cut(s)	97, 137, 493, 496, 879, 2009, 2137
MaeI	CTAG	7 cut(s)	51, 300, 359, 1640, 1787, 1809, 1884
MaeII	ACGT	2 cut(s)	1422, 2038
MaeIII	GTNAC	6 cut(s)	341, 584, 1268, 1691, 1729, 2141
MbiI	CCGCTC	1 cut(s)	265
MfeI	CAATTG	1 cut(s)	1372
MflI	RGATCY	6 cut(s)	446, 590, 1068, 1201, 1220, 1537
MhlI	GDGCHC	3 cut(s)	143, 796, 1552
MlsI	TGGCCA	1 cut(s)	1402
MluCI	AATT	8 cut(s)	694, 897, 1114, 1192, 1372, 1390, 1464, 1469
MluNI	TGGCCA	1 cut(s)	1402
MlyI	GAGTC	4 cut(s)	349, 470, 1331, 2091
Mox20I	TGGCCA	1 cut(s)	1402
Mph1103I	ATGCAT	1 cut(s)	1337
MroXI	GAANNNNTTC	2 cut(s)	416, 1452
MscI	TGGCCA	1 cut(s)	1402
MseI	TTAA	9 cut(s)	624, 693, 762, 785, 807, 1010, 1209, 1413, 1571
MslI	CAYNNNNRTG	1 cut(s)	1107
Msp20I	TGGCCA	1 cut(s)	1402
MspA1I	CMGCKG	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	3 cut(s)	132, 752, 777
MspR9I	CCNGG	7 cut(s)	133, 744, 752, 778, 922, 1542, 1997
MunI	CAATTG	1 cut(s)	1372
MvaI	CCWGG	4 cut(s)	744, 922, 1542, 1997
MwoI	GCNNNNNNNGC	6 cut(s)	464, 473, 1298, 1645, 1744, 2006
NciI	CCSGG	3 cut(s)	133, 752, 778
NheI	GCTAGC	1 cut(s)	1639
NlaIII	CATG	7 cut(s)	455, 599, 737, 1335, 1429, 2141, 2184
NlaIV	GGNNCC	4 cut(s)	165, 705, 1539, 1660
NmuCI	GTSAC	2 cut(s)	341, 2141
NsiI	ATGCAT	1 cut(s)	1337
NspI	RCATGY	2 cut(s)	737, 1335
NspV	TTCGAA	1 cut(s)	1190
PciI	ACATGT	1 cut(s)	733
PciSI	GCTCTTC	2 cut(s)	876, 1925
PdmI	GAANNNNTTC	2 cut(s)	416, 1452
PfeI	GAWTC	6 cut(s)	145, 559, 641, 747, 1056, 1838
PflMI	CCANNNNNTGG	1 cut(s)	1012
PfoI	TCCNGGA	2 cut(s)	750, 776
PkrI	GCNGC	6 cut(s)	1249, 1300, 1303, 1531, 1807, 1937
PleI	GAGTC	4 cut(s)	349, 469, 1330, 2090
PpsI	GAGTC	4 cut(s)	349, 469, 1330, 2090
PpuMI	RGGWCCY	1 cut(s)	1766
PscI	ACATGT	1 cut(s)	733
PsiI	TTATAA	1 cut(s)	1956
Psp5II	RGGWCCY	1 cut(s)	1766
Psp6I	CCWGG	4 cut(s)	742, 920, 1540, 1995
PspEI	GGTNACC	1 cut(s)	1729
PspGI	CCWGG	4 cut(s)	742, 920, 1540, 1995
PspN4I	GGNNCC	4 cut(s)	165, 705, 1539, 1660
PspPI	GGNCC	3 cut(s)	99, 1766, 1827
PspPPI	RGGWCCY	1 cut(s)	1766
PstI	CTGCAG	1 cut(s)	1306
PsuI	RGATCY	6 cut(s)	446, 590, 1068, 1201, 1220, 1537
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	5 cut(s)	212, 830, 919, 1049, 2023
RsaNI	GTAC	5 cut(s)	211, 829, 918, 1048, 2022
RseI	CAYNNNNRTG	1 cut(s)	1107
SapI	GCTCTTC	2 cut(s)	876, 1925
SaqAI	TTAA	9 cut(s)	624, 693, 762, 785, 807, 1010, 1209, 1413, 1571
SatI	GCNGC	6 cut(s)	1248, 1299, 1302, 1530, 1806, 1936
Sau96I	GGNCC	3 cut(s)	99, 1766, 1827
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	4 cut(s)	349, 470, 1331, 2091
ScrFI	CCNGG	7 cut(s)	133, 744, 752, 778, 922, 1542, 1997
SduI	GDGCHC	3 cut(s)	143, 796, 1552
SfaNI	GCATC	7 cut(s)	97, 137, 493, 496, 879, 2009, 2137
SfcI	CTRYAG	2 cut(s)	845, 1302
SfuI	TTCGAA	1 cut(s)	1190
SinI	GGWCC	3 cut(s)	99, 1766, 1827
SmiMI	CAYNNNNRTG	1 cut(s)	1107
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	694, 897, 1114, 1192, 1372, 1390, 1464, 1469
SsiI	CCGC	4 cut(s)	136, 167, 204, 265
SspMI	CTAG	7 cut(s)	51, 300, 359, 1640, 1787, 1809, 1884
StyD4I	CCNGG	7 cut(s)	131, 742, 750, 776, 920, 1540, 1995
StyI	CCWWGG	1 cut(s)	2046
TaaI	ACNGT	6 cut(s)	175, 690, 1353, 1669, 1735, 1984
TaiI	ACGT	2 cut(s)	1425, 2041
TaqI	TCGA	6 cut(s)	143, 237, 709, 796, 1190, 1456
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	8 cut(s)	694, 897, 1114, 1192, 1372, 1390, 1464, 1469
TatI	WGTACW	4 cut(s)	210, 828, 1047, 2021
TfiI	GAWTC	6 cut(s)	145, 559, 641, 747, 1056, 1838
Tru1I	TTAA	9 cut(s)	624, 693, 762, 785, 807, 1010, 1209, 1413, 1571
Tru9I	TTAA	9 cut(s)	624, 693, 762, 785, 807, 1010, 1209, 1413, 1571
TscAI	CASTG	2 cut(s)	1324, 1826
TseFI	GTSAC	2 cut(s)	341, 2141
TseI	GCWGC	6 cut(s)	1247, 1298, 1301, 1529, 1805, 1935
Tsp45I	GTSAC	2 cut(s)	341, 2141
TspDTI	ATGAA	3 cut(s)	891, 1001, 1253
TspGWI	ACGGA	2 cut(s)	341, 603
TspRI	CASTG	2 cut(s)	1324, 1826
Van91I	CCANNNNNTGG	1 cut(s)	1012
Vha464I	CTTAAG	1 cut(s)	761
VpaK11BI	GGWCC	3 cut(s)	99, 1766, 1827
XapI	RAATTY	3 cut(s)	1114, 1192, 1469
XbaI	TCTAGA	1 cut(s)	50
XceI	RCATGY	2 cut(s)	737, 1335
XmiI	GTMKAC	1 cut(s)	1348
XmnI	GAANNNNTTC	2 cut(s)	416, 1452
XspI	CTAG	7 cut(s)	51, 300, 359, 1640, 1787, 1809, 1884
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.