Rh2AG563600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018905
Physical Location & Seq
Reverse (-)
79306923 .. 79307198
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG563600.1

Sequence Viewer

Length: 276 bp
ATGGCAACAATGCCAAAACTGAAAGAAGAAGAAGAGGAAACCATGCTGCTGCAAGGCCAAGCTAATATTTTGCACTACACGTACAACTTTGTCGAAAGCATGGCCTTGAAATGCGCTGTGGAACTTGGCATTGCAGACATCATAAACTCTCACGGCCCCCTAACTGTGCATCGATCAAATCACAGCACGAATTGCCTCGCCGTCCACAGACATCAATTCTCTCTCGAGCCTCATGTGATTTCTCGTCTAGAAAAATGTCTTCGAGGCGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

6.21

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 25 - 56 9.3e-07 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018905)

Species Orthologous Gene IDs
malus_domestica MD17G1079300.v1.1 MD17G1079400.v1.1
pyrus_communis pycom09g01480
rosa_chinensis RchiOBHm_Chr2g0162441
rosa_multiflora Rmu_co8443219.1_g000001
rosa_roxburghii Rroxscaffold_2G00087920
rosa_samantha Rh2AG405000 Rh2AG563600 Rh2BG576400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 3 cut(s) 55, 102, 154
ApeKI GCWGC 2 cut(s) 46, 49
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 33, 36
BceAI ACGGC 2 cut(s) 169, 185
BfaI CTAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 47, 50
BlsI GCNGC 2 cut(s) 48, 51
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 172
BseMI GCAATG 1 cut(s) 129
BseXI GCAGC 2 cut(s) 33, 36
BshFI GGCC 3 cut(s) 57, 104, 156
BshVI ATCGAT 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 224
BsnI GGCC 3 cut(s) 57, 104, 156
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 1 cut(s) 173
BspANI GGCC 3 cut(s) 57, 104, 156
BspDI ATCGAT 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 129
BssMI GATC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 81
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 33, 36
BstV2I GAAGAC 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 172
BsuRI GGCC 3 cut(s) 57, 104, 156
BsuTUI ATCGAT 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 271
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 172
Csp6I GTAC 1 cut(s) 82
CviAII CATG 3 cut(s) 43, 100, 233
CviJI RGCY 5 cut(s) 57, 62, 104, 156, 229
CviKI_1 RGCY 5 cut(s) 57, 62, 104, 156, 229
CviQI GTAC 1 cut(s) 82
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 224
FaeI CATG 3 cut(s) 46, 103, 236
FaiI YATR 4 cut(s) 44, 101, 143, 234
FatI CATG 3 cut(s) 42, 99, 232
Fnu4HI GCNGC 2 cut(s) 47, 50
Fsp4HI GCNGC 2 cut(s) 47, 50
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 47, 50
HaeIII GGCC 3 cut(s) 57, 104, 156
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 46, 103, 236
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 224, 248
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 52, 73, 134, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 3 cut(s) 46, 103, 236
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 33, 36
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 80
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 38, 41, 44, 251
MluCI AATT 2 cut(s) 190, 215
MnlI CCTC 4 cut(s) 28, 206, 240, 257
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 1 cut(s) 173
NlaIII CATG 3 cut(s) 46, 103, 236
NlaIV GGNNCC 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 224
PkrI GCNGC 2 cut(s) 48, 51
Ppu21I YACGTR 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 2 cut(s) 47, 50
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 155
SetI ASST 2 cut(s) 64, 83
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 190, 215
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 83
TaqI TCGA 4 cut(s) 93, 172, 225, 262
TasI AATT 2 cut(s) 190, 215
TseI GCWGC 2 cut(s) 46, 49
XbaI TCTAGA 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.