Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011022

Physical Location & Seq

Genomic Coordinates Forward (+)

37116205 .. 37122707

Gene Structure 6503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGATGGTCGATTTAGGCATCTCACTTGCAAGATTTGTGACCAGCTCGGACAGTTATGGTCCATTGCTTCTGGGATGGCTGGTCACCGGATCATTTGGTCTTCTAGCTATCATCTTTGCATTTCTTAAATGGGAGAGAAGGACATCTCTGAATTGGGTTAAAGCTGCGGCTAGAGAAAAGAAGAAAGTCTGGAAGAAGCTAAGAGCTCCTCTGTCAACCCATACATGGATAGAAGATATTACTAATGGTGAACAGCCATCTACATGCTGTGTTTGCTTGACTTCCTTGGTGTTTCTTCAGAACCTAAGCACTAAAGCTTCATCGCGCACTTCTGTCCATCGTTGTGTAGTTTGTGGTGTGGCAGCTCATTCTTATTGTTCTGATTTTGCAGTAAAAGATTGCAAGTGTGTGGCACAAGCTGGTTCTACCCATGTTCGACACCACTGGTCAGAAAAATGGGTTAATATGGATGATAATCCTGAGATTTCTGCCTGCTGCTTCTATTGCGATGAGCCATGTGGTGTTCCTTTCCTTGATGCTTCTCCAACATGGCATTGTCTATGGTGTCAGAACCTCATACATGTCAGATGTCACAATAAAATGGCAAAAGAGTCTGGTGATGTTTGTGATCTTGGTACTCTTAGGAGGGTCATTCTCTCTCCTTTATGTGTAAAAGAAATCGGTCACTTAAATGGAGGTGGAGTGCTGCGTTCAATAACAGATGAGTTTATAACTTCATCTGTTCGTGGCCAGTTTAGAAGAAAGCGTCATCGTCCTAAACATGGTAGTGGTCATAACTCATCCAATGATGCTCTGGAGTATCTGTTCAATGGGTTTACTGGTATGAAGAAATCCCGTAGTGAGAAGAGTTTTGACCACTTGAAGGATGGCAGGGCACTGAGCGTTAAGGGTAACCATAATGGCTTTATGCAGAAAAAGGGTGGAATTGTCACCTATGGTCAATATAAGAAATATAAAGTGGTTAATTTACCAAAGGATGCAAGGCCTCTTTTGGTTTTTATAAATGCCAGGAGTGGAGGCCAAAATGGGGCTTCTCTAAGAAGGAGGTTGAACATGCTATTGAATCCTGCACAGGTTTTTGAATTGAGTTCTTCTCAAGGGCCTGAGGTTGGTTTGGAATTGTTCAACGATGTGCAATACTTTAGAGTTTTGGTATGTGGTGGAGATGGCACTGTTGCATGGGTCCTTGATGCCATTGAGAAGCATAAATTTGAATCACCGCCACCTGTTGCTATTATCCCCCTTGGCACAGGAAATGATTTGTCAAGGGTTCTGCAATGGGGAAGAGGCTTCTCTATCGTTGATGGACAAGGTGGCTTAACCACGCTTTTACATGACATTAACCATGCGGCAGTTACAATGTTAGATCGCTGGAAGGTAAACATCAAATCAGAAGATGATCCAAATAAAGTGCAATCCAAGTTTATGATGAACTATTTAGGTATATCTCTGAAGCTTCAATTTTCTGGTTATAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004143 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022622 GO:0032501 GO:0032502 GO:0044237 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat

Protein Analysis

500

Amino Acids

55.71

Weight (kDa)

9.28

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_1	PF00130	147 - 206	7e-07	Phorbol esters/diacylglycerol binding domain (C1 domain)
DAGK_cat	PF00781	336 - 436	5.9e-27	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63770 AT5G63770
fragaria_vesca	FvH4_1g25600 FvH4_1g25600 FvH4_1g25600
malus_domestica	MD15G1139400.v1.1
prunus_persica	Prupe.4G282200_v2.0.a1 Prupe.4G282200_v2.0.a1 Prupe.4G282200_v2.0.a1
pyrus_communis	pycom15g12580
rosa_chinensis	RchiOBHm_Chr2g0123771
rosa_laevigata	RLG00000018775
rosa_multiflora	Rmu_sc0001032.1_g000003
rosa_roxburghii	Rroxscaffold_2G00120350
rosa_rugosa	Rorug02G0247900
rosa_samantha	Rh2AG306800 Rh2BG315300 Rh2CG293200 Rh2DG330500
rosa_wichuraiana	Rw2G024620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	731, 1022
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	167, 1241, 1370
AclWI	GGATC	2 cut(s)	97, 1415
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	1 cut(s)	1229
AcuI	CTGAAG	2 cut(s)	281, 1493
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	5 cut(s)	225, 782, 883, 1048, 1130
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	9 cut(s)	714, 829, 883, 1072, 1084, 1103, 1147, 1235, 1481
AjnI	CCWGG	1 cut(s)	1028
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
AluBI	AGCT	9 cut(s)	45, 107, 164, 199, 206, 317, 365, 419, 1477
AluI	AGCT	9 cut(s)	45, 107, 164, 199, 206, 317, 365, 419, 1477
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	97, 1415
AoxI	GGCC	4 cut(s)	748, 1004, 1039, 1121
ApeKI	GCWGC	4 cut(s)	164, 362, 495, 706
ApoI	RAATTY	1 cut(s)	1229
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	3 cut(s)	59, 1121, 1204
AsuHPI	GGTGA	5 cut(s)	76, 260, 629, 943, 1230
AvaII	GGWCC	2 cut(s)	59, 1204
AxyI	CCTNAGG	1 cut(s)	1125
BaeGI	GKGCMC	1 cut(s)	898
BalI	TGGCCA	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	151, 374, 482, 693
BccI	CCATC	6 cut(s)	69, 265, 345, 881, 1181, 1319
BciT130I	CCWGG	1 cut(s)	1030
BfaI	CTAG	2 cut(s)	104, 171
BisI	GCNGC	6 cut(s)	165, 168, 363, 496, 707, 1371
BlsI	GCNGC	6 cut(s)	166, 169, 364, 497, 708, 1372
Bme1390I	CCNGG	1 cut(s)	1030
Bme18I	GGWCC	2 cut(s)	59, 1204
BmgT120I	GGNCC	3 cut(s)	59, 1121, 1204
BmiI	GGNNCC	1 cut(s)	1205
BmrFI	CCNGG	1 cut(s)	1030
BmsI	GCATC	5 cut(s)	27, 526, 799, 988, 1201
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	1099, 1131
BpmI	CTGGAG	1 cut(s)	836
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	1101
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	285, 1264
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 809, 839
Bsc4I	CCNNNNNNNGG	5 cut(s)	225, 782, 883, 1048, 1130
Bse1I	ACTGG	3 cut(s)	449, 751, 844
Bse21I	CCTNAGG	1 cut(s)	1125
Bse3DI	GCAATG	2 cut(s)	62, 1304
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	1030
BseDI	CCNNGG	2 cut(s)	285, 1264
BseGI	GGATG	5 cut(s)	80, 475, 800, 892, 1003
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	5 cut(s)	225, 782, 883, 1048, 1130
BseMI	GCAATG	2 cut(s)	62, 1304
BseMII	CTCAG	3 cut(s)	471, 890, 1116
BseNI	ACTGG	3 cut(s)	449, 751, 844
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	4 cut(s)	151, 374, 482, 693
BsgI	GTGCAG	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	750, 1006, 1041, 1123
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	5 cut(s)	225, 782, 883, 1048, 1130
BsnI	GGCC	4 cut(s)	750, 1006, 1041, 1123
Bsp1286I	GDGCHC	2 cut(s)	208, 898
Bsp143I	GATC	4 cut(s)	89, 628, 1387, 1420
BspACI	CCGC	3 cut(s)	167, 1241, 1370
BspANI	GGCC	4 cut(s)	750, 1006, 1041, 1123
BspCNI	CTCAG	3 cut(s)	472, 891, 1117
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	1205
BspPI	GGATC	2 cut(s)	97, 1415
BsrDI	GCAATG	2 cut(s)	62, 1304
BsrI	ACTGG	3 cut(s)	449, 751, 844
BssECI	CCNNGG	2 cut(s)	285, 1264
BssMI	GATC	4 cut(s)	89, 628, 1387, 1420
BssT1I	CCWWGG	2 cut(s)	285, 1264
Bst2UI	CCWGG	1 cut(s)	1030
Bst4CI	ACNGT	2 cut(s)	53, 1195
Bst6I	CTCTTC	2 cut(s)	860, 1300
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	7 cut(s)	200, 305, 480, 641, 899, 1058, 1125
BstEII	GGTNACC	2 cut(s)	82, 911
BstF5I	GGATG	5 cut(s)	80, 475, 800, 892, 1003
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	92, 631, 1390, 1423
BstMBI	GATC	4 cut(s)	89, 628, 1387, 1420
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 504
BstNI	CCWGG	1 cut(s)	1030
BstNSI	RCATGY	3 cut(s)	267, 584, 1078
BstPI	GGTNACC	2 cut(s)	82, 911
BstSCI	CCNGG	1 cut(s)	1028
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	4 cut(s)	151, 374, 482, 693
BstV2I	GAAGAC	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	1125
BsuRI	GGCC	4 cut(s)	750, 1006, 1041, 1123
BtgZI	GCGATG	2 cut(s)	306, 522
BtsCI	GGATG	5 cut(s)	80, 475, 800, 892, 1003
BtsIMutI	CAGTG	3 cut(s)	442, 896, 1191
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	59, 1121, 1204
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	1 cut(s)	636
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	7 cut(s)	200, 305, 480, 641, 899, 1058, 1125
DpnI	GATC	4 cut(s)	91, 630, 1389, 1422
DpnII	GATC	4 cut(s)	89, 628, 1387, 1420
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	860, 1300
EarI	CTCTTC	2 cut(s)	860, 1300
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	285, 1264
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	59, 1204
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	281, 1493
Eco81I	CCTNAGG	1 cut(s)	1125
Eco91I	GGTNACC	2 cut(s)	82, 911
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	1121, 1204
EcoO65I	GGTNACC	2 cut(s)	82, 911
EcoRII	CCWGG	1 cut(s)	1028
EcoT14I	CCWWGG	2 cut(s)	285, 1264
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	285, 1264
Fnu4HI	GCNGC	6 cut(s)	165, 168, 363, 496, 707, 1371
FokI	GGATG	5 cut(s)	87, 482, 787, 899, 1010
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	6 cut(s)	165, 168, 363, 496, 707, 1371
FspBI	CTAG	2 cut(s)	104, 171
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	6 cut(s)	165, 168, 363, 496, 707, 1371
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	4 cut(s)	750, 1006, 1041, 1123
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	2 cut(s)	315, 1475
HinfI	GANTC	3 cut(s)	611, 1084, 1235
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	5 cut(s)	76, 260, 629, 943, 1230
Hpy166II	GTNNAC	4 cut(s)	216, 251, 837, 1402
Hpy188I	TCNGA	9 cut(s)	49, 150, 300, 382, 451, 570, 587, 1414, 1473
Hpy188III	TCNNGA	3 cut(s)	190, 479, 815
Hpy8I	GTNNAC	4 cut(s)	216, 251, 837, 1402
HpyAV	CCTTC	4 cut(s)	132, 877, 1056, 1390
HpyCH4III	ACNGT	2 cut(s)	53, 1195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 504
HpyF3I	CTNAG	7 cut(s)	200, 305, 480, 641, 899, 1058, 1125
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	89, 628, 1387, 1420
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	4 cut(s)	151, 374, 482, 693
LweI	GCATC	5 cut(s)	27, 526, 799, 988, 1201
MaeI	CTAG	2 cut(s)	104, 171
MaeIII	GTNAC	7 cut(s)	37, 82, 590, 683, 911, 949, 1375
MalI	GATC	4 cut(s)	91, 630, 1389, 1422
MboI	GATC	4 cut(s)	89, 628, 1387, 1420
MhlI	GDGCHC	2 cut(s)	208, 898
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	7 cut(s)	151, 945, 985, 1103, 1139, 1229, 1481
MluNI	TGGCCA	1 cut(s)	750
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	9 cut(s)	219, 584, 639, 689, 1017, 1031, 1059, 1120, 1301
Mox20I	TGGCCA	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	8 cut(s)	126, 159, 462, 689, 906, 984, 1340, 1362
MslI	CAYNNNNRTG	4 cut(s)	262, 342, 690, 786
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	1030
MvaI	CCWGG	1 cut(s)	1030
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	273, 504
NdeII	GATC	4 cut(s)	89, 628, 1387, 1420
NlaIV	GGNNCC	1 cut(s)	1205
NmuCI	GTSAC	5 cut(s)	37, 82, 590, 683, 949
NspI	RCATGY	3 cut(s)	267, 584, 1078
PceI	AGGCCT	1 cut(s)	1006
PciI	ACATGT	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	1084, 1235
PkrI	GCNGC	6 cut(s)	166, 169, 364, 497, 708, 1372
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	1204
PscI	ACATGT	1 cut(s)	580
PsiI	TTATAA	2 cut(s)	731, 1022
Psp124BI	GAGCTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	1028
PspEI	GGTNACC	2 cut(s)	82, 911
PspGI	CCWGG	1 cut(s)	1028
PspN4I	GGNNCC	1 cut(s)	1205
PspPI	GGNCC	3 cut(s)	59, 1121, 1204
PspPPI	RGGWCCY	1 cut(s)	1204
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	4 cut(s)	262, 342, 690, 786
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	8 cut(s)	126, 159, 462, 689, 906, 984, 1340, 1362
SatI	GCNGC	6 cut(s)	165, 168, 363, 496, 707, 1371
Sau3AI	GATC	4 cut(s)	89, 628, 1387, 1420
Sau96I	GGNCC	3 cut(s)	59, 1121, 1204
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	1030
SduI	GDGCHC	2 cut(s)	208, 898
SfaNI	GCATC	5 cut(s)	27, 526, 799, 988, 1201
SinI	GGWCC	2 cut(s)	59, 1204
SmiMI	CAYNNNNRTG	4 cut(s)	262, 342, 690, 786
SmlI	CTYRAG	1 cut(s)	1116
SmoI	CTYRAG	1 cut(s)	1116
Sse9I	AATT	7 cut(s)	151, 945, 985, 1103, 1139, 1229, 1481
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	3 cut(s)	167, 1241, 1370
SspMI	CTAG	2 cut(s)	104, 171
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	1006
StyD4I	CCNGG	1 cut(s)	1028
StyI	CCWWGG	2 cut(s)	285, 1264
TaaI	ACNGT	2 cut(s)	53, 1195
TaqI	TCGA	2 cut(s)	9, 436
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	7 cut(s)	151, 945, 985, 1103, 1139, 1229, 1481
TauI	GCSGC	2 cut(s)	170, 1373
TfiI	GAWTC	2 cut(s)	1084, 1235
Tru1I	TTAA	8 cut(s)	126, 159, 462, 689, 906, 984, 1340, 1362
Tru9I	TTAA	8 cut(s)	126, 159, 462, 689, 906, 984, 1340, 1362
TscAI	CASTG	3 cut(s)	449, 903, 1198
TseFI	GTSAC	5 cut(s)	37, 82, 590, 683, 949
TseI	GCWGC	4 cut(s)	164, 362, 495, 706
Tsp45I	GTSAC	5 cut(s)	37, 82, 590, 683, 949
TspDTI	ATGAA	4 cut(s)	309, 726, 860, 1466
TspRI	CASTG	3 cut(s)	449, 903, 1198
VpaK11BI	GGWCC	2 cut(s)	59, 1204
XapI	RAATTY	1 cut(s)	1229
XceI	RCATGY	3 cut(s)	267, 584, 1078
XcmI	CCANNNNNNNNNTGG	2 cut(s)	811, 884
XspI	CTAG	2 cut(s)	104, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.