Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018830

Physical Location & Seq

Genomic Coordinates Reverse (-)

70975408 .. 70975806

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG503900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTATATAAAGGGCTTCAATTCTCAAACTATAGCATCAAACACAACAACAGCTTCATCTTCTCTCTCTAAACCTACAACTTCTCTCAACATTATGTCTTCCTCTAAGGTCTCAGTGATGCTTTGCCTCTCTGCTGTTTTGTTAAGTTCTTTCATGGCCATGGCTGCAGCCGGTAATTTCTATCAAGACTTTGACATCACATTCGGCGAACAACGTGCTAAGATATTCAACGGAGGACAACATCTCACACTCGACCTCGACCAGTATTCCGGATCTGGTTTCAAGTCCAAGAAGGAGTACTTGTTTGGAAGGATCGACATGCAAATCAAACTTGTCGCTGGCAACTCAGCTGGCACTGTCACTGCATATTATGTAAGTCAGCTAGCATTGTGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

132

Amino Acids

14.27

Weight (kDa)

8.91

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	61 - 127	3.8e-15	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09151
pyrus_communis	pycom09g07180
rosa_chinensis	RchiOBHm_Chr4g0402941
rosa_laevigata	RLG00000009038
rosa_samantha	Rh2BG503900 Rh4AG116400 Rh4CG123600 Rh4CG123800 Rh4CG185600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	269
AclWI	GGATC	2 cut(s)	280, 320
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	19, 229, 283
AluBI	AGCT	3 cut(s)	53, 350, 382
AluI	AGCT	3 cut(s)	53, 350, 382
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	280, 320
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	164, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuNHI	GCTAGC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	151, 179
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	30, 165
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
BmcAI	AGTACT	1 cut(s)	299
BmsI	GCATC	2 cut(s)	44, 108
BmtI	GCTAGC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	126, 360
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	151, 179
BshFI	GGCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	171, 270
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	115
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	272, 312
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	125, 359
BspEI	TCCGGA	1 cut(s)	269
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	280, 320
BspTNI	GGTCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	272, 312
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	340, 352, 384
BstDEI	CTNAG	4 cut(s)	105, 112, 219, 346
BstDSI	CCRYGG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	275, 315
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	272, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	30, 165
BstV1I	GCAGC	2 cut(s)	151, 179
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	120, 354, 360
Cac8I	GCNNGC	3 cut(s)	340, 352, 384
Cfr10I	RCCGGY	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	3 cut(s)	154, 160, 319
CviJI	RGCY	7 cut(s)	15, 53, 158, 164, 170, 350, 382
CviKI_1	RGCY	7 cut(s)	15, 53, 158, 164, 170, 350, 382
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	105, 112, 219, 346
DpnI	GATC	2 cut(s)	274, 314
DpnII	GATC	2 cut(s)	272, 312
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	157, 163, 322
FaiI	YATR	9 cut(s)	6, 8, 32, 95, 155, 161, 320, 367, 372
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	153, 159, 318
Fnu4HI	GCNGC	2 cut(s)	165, 168
Fsp4HI	GCNGC	2 cut(s)	165, 168
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	165, 168
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	171, 270
Hin1II	CATG	3 cut(s)	157, 163, 322
HpaII	CCGG	2 cut(s)	171, 270
Hpy188III	TCNNGA	2 cut(s)	185, 270
HpyAV	CCTTC	2 cut(s)	286, 303
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	167, 322, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	4 cut(s)	105, 112, 219, 346
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	3 cut(s)	157, 163, 322
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	272, 312
LpnPI	CCDG	6 cut(s)	184, 261, 275, 283, 324, 336
Lsp1109I	GCAGC	2 cut(s)	151, 179
LweI	GCATC	2 cut(s)	44, 108
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	274, 314
MboI	GATC	2 cut(s)	272, 312
MboII	GAAGA	2 cut(s)	51, 90
MflI	RGATCY	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	19, 175
MluNI	TGGCCA	1 cut(s)	158
MnlI	CCTC	4 cut(s)	112, 137, 227, 266
Mox20I	TGGCCA	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	171, 270
MwoI	GCNNNNNNNGC	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	272, 312
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	157, 163, 322
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	166, 169
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	2 cut(s)	272, 312
ScaI	AGTACT	1 cut(s)	299
SetI	ASST	7 cut(s)	55, 76, 111, 217, 258, 352, 384
SfaNI	GCATC	2 cut(s)	44, 108
SfcI	CTRYAG	2 cut(s)	30, 165
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	19, 175
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	252, 258, 315
TasI	AATT	2 cut(s)	19, 175
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	3 cut(s)	120, 361, 367
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	45, 142
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	120, 361, 367
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.