Rh2CG062600

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
5145056 .. 5147376
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG062600.1

Sequence Viewer

Length: 870 bp
ATGGCGATTCTGCGAGCTTTCTTGATAGGTTTATGCATCATTGCTTTTCGTCAAAGCTTAGTTGATGCAAAGTTTTCGAAGAGCATGTACATCACCTGGGGTCAGCAACATGCTGCAATTCAAGGAAATGGCGAAGATGTCCAACTCGTGCTCGATCAAAGTTCAGGATCTGCTGTTCAATCAAAGAGAGCTTTCCTATTCGGAAGCATTGAGATGCTCATTAAGTTGGTACCTAATAATTCCGCAGGCACAGTAACAGCTTTCTATCTATCATCTACAGGAAGCACACATGACGAGATAGATTTTGAATTCTTAGGGAACGTTTCTGGACAACCTCACATTATACACACAAACATCTATACACAAGGAAATGGAAGCAAAGAGCAGCAGTTTTACCTCTGGTTTGACCCAACAGCTGATTTCCACAACTACACCATACATTGGAACCCAACCACAGTTGTGTGGTACATCGATGGACTGCCAATTCGTGTTTTCAGAAACTACGAAAACGAGGGGATTGCTTACCCCAGCAAGCAAGGAATGAGGGTTTACTCCAGCTTATGGAATGCAGATAACTGGGCAACCAGAGGCGGACTAGTCAAAATCGACTGGACCAGTGCCCCATTCATAGCTAGATTGCGCAACTTCAGGGCAAGGGCCTGCAAGTGGGATGGACCGAGCAGCACCACTCAATGCGCCGCCACTACCCCTGCAAACTGGTGGACATCCCCCACGCACAAACAGCTGAGCAGTGCTAAATTGGGCCAGCTTAAGTCGGTCAGAGATAACTACATGATCTACGACTACTGCAAAGACACTAAACGATTCAATGGAAAGATGCCTACTGAATGCTCCAAGCAACAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

289

Amino Acids

32.72

Weight (kDa)

9.01

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 26 - 205 4.9e-64 Glycosyl hydrolases family 16
XET_C PF06955 236 - 284 1.6e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28850
fragaria_vesca FvH4_7g07550
malus_domestica MD02G1057800.v1.1 MD15G1192200.v1.1
prunus_persica Prupe.7G225000_v2.0.a1
pyrus_communis pycom02g04690 pycom15g17210
rosa_chinensis RchiOBHm_Chr2g0091321
rosa_laevigata RLG00000016211
rosa_multiflora Rmu_sc0002270.1_g000048
rosa_roxburghii Rroxscaffold_2G00150210
rosa_rugosa Rorug02G0016300
rosa_samantha Rh2CG062600 Rh2DG061200
rosa_wichuraiana Rw2G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 641
Acc65I GGTACC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 2 cut(s) 441, 561
AciI CCGC 3 cut(s) 243, 591, 699
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 631
AfaI GTAC 3 cut(s) 89, 231, 467
AfiI CCNNNNNNNGG 3 cut(s) 441, 561, 666
AflII CTTAAG 1 cut(s) 770
AgsI TTSAA 4 cut(s) 122, 179, 308, 829
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 1 cut(s) 848
AleI CACNNNNGTG 1 cut(s) 458
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 9 cut(s) 17, 57, 191, 260, 416, 558, 632, 745, 769
AluI AGCT 9 cut(s) 17, 57, 191, 260, 416, 558, 632, 745, 769
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 2 cut(s) 657, 763
ApeKI GCWGC 3 cut(s) 113, 385, 681
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
Asp718I GGTACC 1 cut(s) 229
AspLEI GCGC 2 cut(s) 642, 698
AspS9I GGNCC 4 cut(s) 612, 657, 674, 763
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 612, 674
BaeGI GKGCMC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BauI CACGAG 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 100, 397, 693
BccI CCATC 2 cut(s) 467, 665
BcgI CGANNNNNNTGC 4 cut(s) 57, 91, 500, 534
BciT130I CCWGG 1 cut(s) 97
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 2 cut(s) 596, 633
BfmI CTRYAG 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 770
BisI GCNGC 4 cut(s) 114, 386, 682, 699
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 4 cut(s) 115, 387, 683, 700
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 612, 674
BmgT120I GGNCC 4 cut(s) 612, 657, 674, 763
BmiI GGNNCC 2 cut(s) 231, 446
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 4 cut(s) 45, 55, 204, 828
BmuI ACTGGG 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 538
Bpu1102I GCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 561, 666
Bse1I ACTGG 4 cut(s) 581, 614, 615, 722
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 676, 725
BseLI CCNNNNNNNGG 3 cut(s) 441, 561, 666
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 737
BseNI ACTGG 4 cut(s) 581, 614, 615, 722
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 3 cut(s) 100, 397, 693
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 2 cut(s) 659, 765
BshNI GGYRCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 441, 561, 666
BsmI GAATGC 2 cut(s) 571, 854
BsnI GGCC 2 cut(s) 659, 765
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 153, 622
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 154, 167, 795
Bsp1720I GCTNAGC 1 cut(s) 746
BspACI CCGC 3 cut(s) 243, 591, 699
BspANI GGCC 2 cut(s) 659, 765
BspCNI CTCAG 1 cut(s) 738
BspDI ATCGAT 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 231, 446
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 4 cut(s) 581, 614, 615, 722
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 154, 167, 795
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 253, 457, 864
Bst6I CTCTTC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 770
BstAUI TGTACA 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 15, 247, 533, 661, 767
BstDEI CTNAG 3 cut(s) 58, 313, 746
BstF5I GGATG 2 cut(s) 676, 725
BstHHI GCGC 2 cut(s) 642, 698
BstKTI GATC 3 cut(s) 157, 170, 798
BstMBI GATC 3 cut(s) 154, 167, 795
BstMWI GCNNNNNNNGC 1 cut(s) 742
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 88, 113
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 3 cut(s) 100, 397, 693
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 471
BsuRI GGCC 2 cut(s) 659, 765
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 2 cut(s) 676, 725
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 622, 757
Cac8I GCNNGC 5 cut(s) 15, 247, 533, 661, 767
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 2 cut(s) 642, 698
Cfr13I GGNCC 4 cut(s) 612, 657, 674, 763
ClaI ATCGAT 1 cut(s) 471
Csp6I GTAC 3 cut(s) 88, 230, 466
CviAII CATG 4 cut(s) 85, 110, 290, 793
CviQI GTAC 3 cut(s) 88, 230, 466
DdeI CTNAG 3 cut(s) 58, 313, 746
DpnI GATC 3 cut(s) 156, 169, 797
DpnII GATC 3 cut(s) 154, 167, 795
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 612, 674
Eco57I CTGAAG 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 38
FaeI CATG 4 cut(s) 88, 113, 293, 796
FatI CATG 4 cut(s) 84, 109, 289, 792
Fnu4HI GCNGC 4 cut(s) 114, 386, 682, 699
FokI GGATG 2 cut(s) 683, 712
Fsp4HI GCNGC 4 cut(s) 114, 386, 682, 699
FspBI CTAG 2 cut(s) 596, 633
FspI TGCGCA 1 cut(s) 641
GlaI GCGC 2 cut(s) 641, 697
GluI GCNGC 4 cut(s) 114, 386, 682, 699
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 2 cut(s) 659, 765
HhaI GCGC 2 cut(s) 642, 698
Hin1II CATG 4 cut(s) 88, 113, 293, 796
Hin6I GCGC 2 cut(s) 640, 696
HinP1I GCGC 2 cut(s) 640, 696
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 2 cut(s) 7, 825
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 550, 723
Hpy188I TCNGA 3 cut(s) 203, 497, 782
Hpy188III TCNNGA 3 cut(s) 22, 165, 327
Hpy8I GTNNAC 2 cut(s) 550, 723
HpyCH4III ACNGT 3 cut(s) 253, 457, 864
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 7 cut(s) 36, 68, 116, 569, 663, 713, 810
HpyF10VI GCNNNNNNNGC 1 cut(s) 742
HpyF3I CTNAG 3 cut(s) 58, 313, 746
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 4 cut(s) 88, 113, 293, 796
HspAI GCGC 2 cut(s) 640, 696
KpnI GGTACC 1 cut(s) 233
Kzo9I GATC 3 cut(s) 154, 167, 795
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 857
Lsp1109I GCAGC 3 cut(s) 100, 397, 693
LweI GCATC 4 cut(s) 45, 55, 204, 828
MaeI CTAG 2 cut(s) 596, 633
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 156, 169, 797
MboI GATC 3 cut(s) 154, 167, 795
MboII GAAGA 2 cut(s) 91, 146
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 153, 622
MluCI AATT 5 cut(s) 117, 238, 308, 483, 758
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 5 cut(s) 345, 407, 505, 537, 581
Mph1103I ATGCAT 1 cut(s) 38
MseI TTAA 2 cut(s) 222, 771
MslI CAYNNNNRTG 2 cut(s) 212, 458
MspA1I CMGCKG 2 cut(s) 416, 745
MspCI CTTAAG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 2 cut(s) 571, 854
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 742
NdeII GATC 3 cut(s) 154, 167, 795
NlaIII CATG 4 cut(s) 88, 113, 293, 796
NlaIV GGNNCC 2 cut(s) 231, 446
NsbI TGCGCA 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 38
NspI RCATGY 2 cut(s) 88, 113
NspV TTCGAA 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 74
PctI GAATGC 2 cut(s) 571, 854
PfeI GAWTC 2 cut(s) 7, 825
PflMI CCANNNNNTGG 2 cut(s) 441, 561
PkrI GCNGC 4 cut(s) 115, 387, 683, 700
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 231, 446
PspPI GGNCC 4 cut(s) 612, 657, 674, 763
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 167
PvuII CAGCTG 2 cut(s) 416, 745
RsaI GTAC 3 cut(s) 89, 231, 467
RsaNI GTAC 3 cut(s) 88, 230, 466
RseI CAYNNNNRTG 2 cut(s) 212, 458
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 222, 771
SatI GCNGC 4 cut(s) 114, 386, 682, 699
Sau3AI GATC 3 cut(s) 154, 167, 795
Sau96I GGNCC 4 cut(s) 612, 657, 674, 763
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 153, 622
SfaNI GCATC 4 cut(s) 45, 55, 204, 828
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 2 cut(s) 612, 674
SmiMI CAYNNNNRTG 2 cut(s) 212, 458
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 5 cut(s) 117, 238, 308, 483, 758
SsiI CCGC 3 cut(s) 243, 591, 699
SspMI CTAG 2 cut(s) 596, 633
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 253, 457, 864
TaiI ACGT 1 cut(s) 324
TaqI TCGA 4 cut(s) 77, 153, 471, 606
TaqII GACCGA 2 cut(s) 691, 766
TasI AATT 5 cut(s) 117, 238, 308, 483, 758
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 7, 825
Tru1I TTAA 2 cut(s) 222, 771
Tru9I TTAA 2 cut(s) 222, 771
TscAI CASTG 2 cut(s) 622, 757
TseI GCWGC 3 cut(s) 113, 385, 681
TspDTI ATGAA 1 cut(s) 616
TspRI CASTG 2 cut(s) 622, 757
Van91I CCANNNNNTGG 2 cut(s) 441, 561
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 612, 674
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 88, 113
XspI CTAG 2 cut(s) 596, 633
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.