nuclear matrix constituent protein 1-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65770 AT5G65770 AT5G65770 AT5G65780 |
| fragaria_vesca | FvH4_1g18512 FvH4_1g18512 |
| malus_domestica | MD02G1191400.v1.1 MD15G1302600.v1.1 |
| prunus_persica | Prupe.6G214100_v2.0.a1 Prupe.6G214100_v2.0.a1 |
| pyrus_communis | pycom15g26560 |
| rosa_chinensis | RchiOBHm_Chr2g0109151 |
| rosa_laevigata | RLG00000017717 |
| rosa_multiflora | Rmu_sc0000186.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00134460 |
| rosa_rugosa | Rorug02G0157500 Rorug02G0157500 Rorug02G0157500 Rorug02G0157600 |
| rosa_samantha | Rh2AG209600 Rh2BG220000 Rh2CG212100 Rh2DG215700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 768 |
| AccBSI | CCGCTC | 2 cut(s) | 1765, 1798 |
| AccII | CGCG | 3 cut(s) | 13, 29, 496 |
| AciI | CCGC | 8 cut(s) | 11, 118, 157, 364, 1627, 1765, 1798, 2152 |
| AclWI | GGATC | 5 cut(s) | 1179, 1734, 2073, 2321, 2807 |
| AcoI | YGGCCR | 2 cut(s) | 300, 1011 |
| AcsI | RAATTY | 4 cut(s) | 524, 896, 1085, 2961 |
| AcuI | CTGAAG | 4 cut(s) | 372, 510, 552, 2162 |
| AcyI | GRCGYC | 1 cut(s) | 35 |
| AfaI | GTAC | 3 cut(s) | 2573, 2820, 2974 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 44, 790, 1146, 1797, 2727 |
| AflII | CTTAAG | 2 cut(s) | 122, 1499 |
| AhlI | ACTAGT | 1 cut(s) | 3184 |
| AjnI | CCWGG | 3 cut(s) | 37, 1436, 2760 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2640, 2672 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 25, 57 |
| Alw26I | GTCTC | 7 cut(s) | 290, 367, 911, 1138, 2463, 2819, 3038 |
| AlwI | GGATC | 5 cut(s) | 1179, 1734, 2073, 2321, 2807 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 452, 820 |
| AoxI | GGCC | 3 cut(s) | 300, 1011, 1575 |
| ApoI | RAATTY | 4 cut(s) | 524, 896, 1085, 2961 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 524, 2181 |
| AspLEI | GCGC | 3 cut(s) | 175, 496, 769 |
| AspS9I | GGNCC | 2 cut(s) | 817, 1189 |
| AsuC2I | CCSGG | 1 cut(s) | 69 |
| AsuHPI | GGTGA | 6 cut(s) | 106, 581, 1117, 2650, 2672, 2735 |
| AvaII | GGWCC | 2 cut(s) | 817, 1189 |
| BaeGI | GKGCMC | 2 cut(s) | 2268, 2737 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3146, 3179 |
| BalI | TGGCCA | 1 cut(s) | 1013 |
| BanII | GRGCYC | 1 cut(s) | 1528 |
| BauI | CACGAG | 2 cut(s) | 434, 627 |
| BbsI | GAAGAC | 2 cut(s) | 227, 852 |
| BbvCI | CCTCAGC | 2 cut(s) | 537, 1548 |
| BceAI | ACGGC | 1 cut(s) | 315 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 98, 425, 459 |
| BciT130I | CCWGG | 3 cut(s) | 39, 1438, 2762 |
| BclI | TGATCA | 3 cut(s) | 322, 889, 2956 |
| BcnI | CCSGG | 1 cut(s) | 69 |
| BcoDI | GTCTC | 7 cut(s) | 290, 367, 911, 1138, 2463, 2819, 3038 |
| BcuI | ACTAGT | 1 cut(s) | 3184 |
| BfaI | CTAG | 9 cut(s) | 389, 951, 1379, 1397, 1487, 2364, 2403, 2829, 3185 |
| BfmI | CTRYAG | 3 cut(s) | 2868, 2976, 3110 |
| BfrI | CTTAAG | 2 cut(s) | 122, 1499 |
| BglII | AGATCT | 1 cut(s) | 1483 |
| BlpI | GCTNAGC | 2 cut(s) | 192, 2094 |
| BmcAI | AGTACT | 1 cut(s) | 2820 |
| Bme1390I | CCNGG | 4 cut(s) | 39, 69, 1438, 2762 |
| Bme18I | GGWCC | 2 cut(s) | 817, 1189 |
| BmgT120I | GGNCC | 2 cut(s) | 817, 1189 |
| BmiI | GGNNCC | 2 cut(s) | 43, 3099 |
| BmrFI | CCNGG | 4 cut(s) | 39, 69, 1438, 2762 |
| BmsI | GCATC | 9 cut(s) | 347, 429, 502, 754, 1081, 1732, 1809, 2227, 2235 |
| BpiI | GAAGAC | 2 cut(s) | 227, 852 |
| BpmI | CTGGAG | 2 cut(s) | 722, 1121 |
| Bpu10I | CCTNAGC | 3 cut(s) | 537, 1548, 3144 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 192, 2094 |
| BpuEI | CTTGAG | 4 cut(s) | 722, 1343, 1985, 2843 |
| BpuMI | CCSGG | 1 cut(s) | 69 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1176 |
| BsaHI | GRCGYC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 2761, 3138 |
| BsaWI | WCCGGW | 2 cut(s) | 44, 91 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 119, 149, 1094, 1124, 1922, 1952 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 44, 790, 1146, 1797, 2727 |
| Bse118I | RCCGGY | 1 cut(s) | 2720 |
| Bse1I | ACTGG | 2 cut(s) | 1014, 2816 |
| Bse3DI | GCAATG | 2 cut(s) | 177, 2945 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1176 |
| BseBI | CCWGG | 3 cut(s) | 39, 1438, 2762 |
| BseDI | CCNNGG | 3 cut(s) | 68, 2761, 3138 |
| BseGI | GGATG | 3 cut(s) | 517, 1720, 2591 |
| BseJI | GATNNNNATC | 1 cut(s) | 1176 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 44, 790, 1146, 1797, 2727 |
| BseMI | GCAATG | 2 cut(s) | 177, 2945 |
| BseNI | ACTGG | 2 cut(s) | 1014, 2816 |
| BseSI | GKGCMC | 2 cut(s) | 2268, 2737 |
| BseX3I | CGGCCG | 1 cut(s) | 300 |
| BseYI | CCCAGC | 2 cut(s) | 131, 2267 |
| BsgI | GTGCAG | 4 cut(s) | 315, 465, 2419, 2884 |
| Bsh1236I | CGCG | 3 cut(s) | 13, 29, 496 |
| Bsh1285I | CGRYCG | 2 cut(s) | 17, 303 |
| BshFI | GGCC | 3 cut(s) | 302, 1013, 1577 |
| BsiEI | CGRYCG | 2 cut(s) | 17, 303 |
| BsiSI | CCGG | 4 cut(s) | 45, 68, 92, 2721 |
| BslFI | GGGAC | 1 cut(s) | 176 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 44, 790, 1146, 1797, 2727 |
| BsmAI | GTCTC | 7 cut(s) | 290, 367, 911, 1138, 2463, 2819, 3038 |
| BsmBI | CGTCTC | 2 cut(s) | 290, 1138 |
| BsmFI | GGGAC | 1 cut(s) | 176 |
| BsmI | GAATGC | 2 cut(s) | 1664, 2623 |
| BsnI | GGCC | 3 cut(s) | 302, 1013, 1577 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1528, 2268, 2737 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 192, 2094 |
| Bsp68I | TCGCGA | 1 cut(s) | 29 |
| BspACI | CCGC | 8 cut(s) | 11, 118, 157, 364, 1627, 1765, 1798, 2152 |
| BspANI | GGCC | 3 cut(s) | 302, 1013, 1577 |
| BspFNI | CGCG | 3 cut(s) | 13, 29, 496 |
| BspHI | TCATGA | 1 cut(s) | 1776 |
| BspLI | GGNNCC | 2 cut(s) | 43, 3099 |
| BspPI | GGATC | 5 cut(s) | 1179, 1734, 2073, 2321, 2807 |
| BspQI | GCTCTTC | 2 cut(s) | 780, 1680 |
| BspTI | CTTAAG | 2 cut(s) | 122, 1499 |
| BsrBI | CCGCTC | 2 cut(s) | 1765, 1798 |
| BsrDI | GCAATG | 2 cut(s) | 177, 2945 |
| BsrFI | RCCGGY | 1 cut(s) | 2720 |
| BsrI | ACTGG | 2 cut(s) | 1014, 2816 |
| BssAI | RCCGGY | 1 cut(s) | 2720 |
| BssECI | CCNNGG | 3 cut(s) | 68, 2761, 3138 |
| BssNI | GRCGYC | 1 cut(s) | 35 |
| BssSI | CACGAG | 2 cut(s) | 434, 627 |
| BssT1I | CCWWGG | 1 cut(s) | 3138 |
| Bst2BI | CACGAG | 2 cut(s) | 434, 627 |
| Bst2UI | CCWGG | 3 cut(s) | 39, 1438, 2762 |
| Bst4CI | ACNGT | 8 cut(s) | 320, 593, 1197, 1883, 2457, 2869, 2905, 2977 |
| Bst6I | CTCTTC | 9 cut(s) | 248, 295, 780, 949, 1404, 1680, 2172, 2773, 3204 |
| BstACI | GRCGYC | 1 cut(s) | 35 |
| BstAFI | CTTAAG | 2 cut(s) | 122, 1499 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 439, 452 |
| BstC8I | GCNNGC | 9 cut(s) | 444, 570, 771, 1015, 1115, 2166, 2304, 2518, 2630 |
| BstF5I | GGATG | 3 cut(s) | 517, 1720, 2591 |
| BstFNI | CGCG | 3 cut(s) | 13, 29, 496 |
| BstHHI | GCGC | 3 cut(s) | 175, 496, 769 |
| BstMAI | GTCTC | 7 cut(s) | 290, 367, 911, 1138, 2463, 2819, 3038 |
| BstMCI | CGRYCG | 2 cut(s) | 17, 303 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 179, 188, 335, 439, 452, 1384, 2146, 2237 |
| BstNI | CCWGG | 3 cut(s) | 39, 1438, 2762 |
| BstNSI | RCATGY | 2 cut(s) | 338, 2168 |
| BstSCI | CCNGG | 4 cut(s) | 37, 67, 1436, 2760 |
| BstSFI | CTRYAG | 3 cut(s) | 2868, 2976, 3110 |
| BstSLI | GKGCMC | 2 cut(s) | 2268, 2737 |
| BstUI | CGCG | 3 cut(s) | 13, 29, 496 |
| BstV2I | GAAGAC | 2 cut(s) | 227, 852 |
| BstX2I | RGATCY | 2 cut(s) | 1171, 1483 |
| BstYI | RGATCY | 2 cut(s) | 1171, 1483 |
| BstZI | CGGCCG | 1 cut(s) | 300 |
| BsuRI | GGCC | 3 cut(s) | 302, 1013, 1577 |
| BtsCI | GGATG | 3 cut(s) | 517, 1720, 2591 |
| BtsI | GCAGTG | 1 cut(s) | 2896 |
| BtsIMutI | CAGTG | 6 cut(s) | 482, 528, 2436, 2865, 2896, 2901 |
| BtuMI | TCGCGA | 1 cut(s) | 29 |
| Cac8I | GCNNGC | 9 cut(s) | 444, 570, 771, 1015, 1115, 2166, 2304, 2518, 2630 |
| CaiI | CAGNNNCTG | 2 cut(s) | 452, 820 |
| CciI | TCATGA | 1 cut(s) | 1776 |
| CfoI | GCGC | 3 cut(s) | 175, 496, 769 |
| Cfr10I | RCCGGY | 1 cut(s) | 2720 |
| Cfr13I | GGNCC | 2 cut(s) | 817, 1189 |
| CseI | GACGC | 2 cut(s) | 43, 3086 |
| Csp6I | GTAC | 3 cut(s) | 2572, 2819, 2973 |
| CviAII | CATG | 8 cut(s) | 229, 335, 1691, 1777, 1898, 2165, 2575, 2705 |
| CviQI | GTAC | 3 cut(s) | 2572, 2819, 2973 |
| EaeI | YGGCCR | 2 cut(s) | 300, 1011 |
| EagI | CGGCCG | 1 cut(s) | 300 |
| Eam1104I | CTCTTC | 9 cut(s) | 248, 295, 780, 949, 1404, 1680, 2172, 2773, 3204 |
| EarI | CTCTTC | 9 cut(s) | 248, 295, 780, 949, 1404, 1680, 2172, 2773, 3204 |
| EclXI | CGGCCG | 1 cut(s) | 300 |
| Eco130I | CCWWGG | 1 cut(s) | 3138 |
| Eco24I | GRGCYC | 1 cut(s) | 1528 |
| Eco47I | GGWCC | 2 cut(s) | 817, 1189 |
| Eco52I | CGGCCG | 1 cut(s) | 300 |
| Eco57I | CTGAAG | 4 cut(s) | 372, 510, 552, 2162 |
| EcoO109I | RGGNCCY | 2 cut(s) | 817, 1189 |
| EcoRII | CCWGG | 3 cut(s) | 37, 1436, 2760 |
| EcoT14I | CCWWGG | 1 cut(s) | 3138 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| EcoT38I | GRGCYC | 1 cut(s) | 1528 |
| ErhI | CCWWGG | 1 cut(s) | 3138 |
| Esp3I | CGTCTC | 2 cut(s) | 290, 1138 |
| FaeI | CATG | 8 cut(s) | 232, 338, 1694, 1780, 1901, 2168, 2578, 2708 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 624, 656, 762, 794, 946, 978, 975, 1007 |
| FaqI | GGGAC | 1 cut(s) | 176 |
| FatI | CATG | 8 cut(s) | 228, 334, 1690, 1776, 1897, 2164, 2574, 2704 |
| FauI | CCCGC | 2 cut(s) | 357, 2145 |
| FbaI | TGATCA | 3 cut(s) | 322, 889, 2956 |
| FokI | GGATG | 3 cut(s) | 524, 1727, 2578 |
| FriOI | GRGCYC | 1 cut(s) | 1528 |
| FspBI | CTAG | 9 cut(s) | 389, 951, 1379, 1397, 1487, 2364, 2403, 2829, 3185 |
| FspI | TGCGCA | 1 cut(s) | 768 |
| GlaI | GCGC | 3 cut(s) | 174, 495, 768 |
| GsaI | CCCAGC | 2 cut(s) | 135, 2271 |
| GsuI | CTGGAG | 2 cut(s) | 722, 1121 |
| HaeIII | GGCC | 3 cut(s) | 302, 1013, 1577 |
| HapII | CCGG | 4 cut(s) | 45, 68, 92, 2721 |
| HgaI | GACGC | 2 cut(s) | 43, 3086 |
| HhaI | GCGC | 3 cut(s) | 175, 496, 769 |
| Hin1I | GRCGYC | 1 cut(s) | 35 |
| Hin1II | CATG | 8 cut(s) | 232, 338, 1694, 1780, 1901, 2168, 2578, 2708 |
| Hin6I | GCGC | 3 cut(s) | 173, 494, 767 |
| HinP1I | GCGC | 3 cut(s) | 173, 494, 767 |
| HincII | GTYRAC | 2 cut(s) | 2863, 2910 |
| HindII | GTYRAC | 2 cut(s) | 2863, 2910 |
| HindIII | AAGCTT | 2 cut(s) | 194, 576 |
| HpaII | CCGG | 4 cut(s) | 45, 68, 92, 2721 |
| HphI | GGTGA | 6 cut(s) | 106, 581, 1117, 2650, 2672, 2735 |
| Hpy166II | GTNNAC | 2 cut(s) | 2863, 2910 |
| Hpy8I | GTNNAC | 2 cut(s) | 2863, 2910 |
| HpyCH4III | ACNGT | 8 cut(s) | 320, 593, 1197, 1883, 2457, 2869, 2905, 2977 |
| HpyCH4IV | ACGT | 3 cut(s) | 1738, 1831, 2884 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 179, 188, 335, 439, 452, 1384, 2146, 2237 |
| HpySE526I | ACGT | 3 cut(s) | 1738, 1831, 2884 |
| Hsp92I | GRCGYC | 1 cut(s) | 35 |
| Hsp92II | CATG | 8 cut(s) | 232, 338, 1694, 1780, 1901, 2168, 2578, 2708 |
| HspAI | GCGC | 3 cut(s) | 173, 494, 767 |
| Ksp22I | TGATCA | 3 cut(s) | 322, 889, 2956 |
| LguI | GCTCTTC | 2 cut(s) | 780, 1680 |
| LmnI | GCTCC | 3 cut(s) | 871, 907, 1318 |
| LweI | GCATC | 9 cut(s) | 347, 429, 502, 754, 1081, 1732, 1809, 2227, 2235 |
| MaeI | CTAG | 9 cut(s) | 389, 951, 1379, 1397, 1487, 2364, 2403, 2829, 3185 |
| MaeII | ACGT | 3 cut(s) | 1738, 1831, 2884 |
| MaeIII | GTNAC | 3 cut(s) | 98, 2527, 3191 |
| MbiI | CCGCTC | 2 cut(s) | 1765, 1798 |
| MfeI | CAATTG | 1 cut(s) | 2474 |
| MflI | RGATCY | 2 cut(s) | 1171, 1483 |
| MhlI | GDGCHC | 3 cut(s) | 1528, 2268, 2737 |
| MlsI | TGGCCA | 1 cut(s) | 1013 |
| MluNI | TGGCCA | 1 cut(s) | 1013 |
| MlyI | GAGTC | 6 cut(s) | 16, 97, 155, 402, 2354, 2702 |
| MmeI | TCCRAC | 4 cut(s) | 240, 822, 1854, 3160 |
| Mox20I | TGGCCA | 1 cut(s) | 1013 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 2 cut(s) | 524, 2181 |
| MscI | TGGCCA | 1 cut(s) | 1013 |
| Msp20I | TGGCCA | 1 cut(s) | 1013 |
| MspA1I | CMGCKG | 1 cut(s) | 2152 |
| MspCI | CTTAAG | 2 cut(s) | 122, 1499 |
| MspI | CCGG | 4 cut(s) | 45, 68, 92, 2721 |
| MspR9I | CCNGG | 4 cut(s) | 39, 69, 1438, 2762 |
| MunI | CAATTG | 1 cut(s) | 2474 |
| Mva1269I | GAATGC | 2 cut(s) | 1664, 2623 |
| MvaI | CCWGG | 3 cut(s) | 39, 1438, 2762 |
| MvnI | CGCG | 3 cut(s) | 13, 29, 496 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 179, 188, 335, 439, 452, 1384, 2146, 2237 |
| NciI | CCSGG | 1 cut(s) | 69 |
| NlaIII | CATG | 8 cut(s) | 232, 338, 1694, 1780, 1901, 2168, 2578, 2708 |
| NlaIV | GGNNCC | 2 cut(s) | 43, 3099 |
| NmuCI | GTSAC | 2 cut(s) | 98, 3191 |
| NruI | TCGCGA | 1 cut(s) | 29 |
| NsbI | TGCGCA | 1 cut(s) | 768 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 2 cut(s) | 338, 2168 |
| PaeI | GCATGC | 1 cut(s) | 2168 |
| PagI | TCATGA | 1 cut(s) | 1776 |
| PciSI | GCTCTTC | 2 cut(s) | 780, 1680 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 71, 589 |
| PctI | GAATGC | 2 cut(s) | 1664, 2623 |
| PdmI | GAANNNNTTC | 2 cut(s) | 524, 2181 |
| Ple19I | CGATCG | 1 cut(s) | 17 |
| PleI | GAGTC | 6 cut(s) | 15, 96, 154, 401, 2354, 2702 |
| PpsI | GAGTC | 6 cut(s) | 15, 96, 154, 401, 2354, 2702 |
| PpuMI | RGGWCCY | 2 cut(s) | 817, 1189 |
| Psp5II | RGGWCCY | 2 cut(s) | 817, 1189 |
| Psp6I | CCWGG | 3 cut(s) | 37, 1436, 2760 |
| PspFI | CCCAGC | 2 cut(s) | 131, 2267 |
| PspGI | CCWGG | 3 cut(s) | 37, 1436, 2760 |
| PspN4I | GGNNCC | 2 cut(s) | 43, 3099 |
| PspPI | GGNCC | 2 cut(s) | 817, 1189 |
| PspPPI | RGGWCCY | 2 cut(s) | 817, 1189 |
| PstNI | CAGNNNCTG | 2 cut(s) | 452, 820 |
| PsuI | RGATCY | 2 cut(s) | 1171, 1483 |
| PvuI | CGATCG | 1 cut(s) | 17 |
| RruI | TCGCGA | 1 cut(s) | 29 |
| RsaI | GTAC | 3 cut(s) | 2573, 2820, 2974 |
| RsaNI | GTAC | 3 cut(s) | 2572, 2819, 2973 |
| SapI | GCTCTTC | 2 cut(s) | 780, 1680 |
| Sau96I | GGNCC | 2 cut(s) | 817, 1189 |
| ScaI | AGTACT | 1 cut(s) | 2820 |
| SchI | GAGTC | 6 cut(s) | 16, 97, 155, 402, 2354, 2702 |
| ScrFI | CCNGG | 4 cut(s) | 39, 69, 1438, 2762 |
| SduI | GDGCHC | 3 cut(s) | 1528, 2268, 2737 |
| SfaNI | GCATC | 9 cut(s) | 347, 429, 502, 754, 1081, 1732, 1809, 2227, 2235 |
| SfcI | CTRYAG | 3 cut(s) | 2868, 2976, 3110 |
| SinI | GGWCC | 2 cut(s) | 817, 1189 |
| SmlI | CTYRAG | 6 cut(s) | 122, 701, 1322, 1499, 1964, 2822 |
| SmoI | CTYRAG | 6 cut(s) | 122, 701, 1322, 1499, 1964, 2822 |
| SpeI | ACTAGT | 1 cut(s) | 3184 |
| SphI | GCATGC | 1 cut(s) | 2168 |
| SsiI | CCGC | 8 cut(s) | 11, 118, 157, 364, 1627, 1765, 1798, 2152 |
| SspI | AATATT | 3 cut(s) | 502, 862, 2839 |
| SspMI | CTAG | 9 cut(s) | 389, 951, 1379, 1397, 1487, 2364, 2403, 2829, 3185 |
| StyD4I | CCNGG | 4 cut(s) | 37, 67, 1436, 2760 |
| StyI | CCWWGG | 1 cut(s) | 3138 |
| TaaI | ACNGT | 8 cut(s) | 320, 593, 1197, 1883, 2457, 2869, 2905, 2977 |
| TaiI | ACGT | 3 cut(s) | 1741, 1834, 2887 |
| TaqII | GACCGA | 1 cut(s) | 929 |
| TatI | WGTACW | 1 cut(s) | 2818 |
| TauI | GCSGC | 2 cut(s) | 121, 1768 |
| TscAI | CASTG | 6 cut(s) | 482, 535, 2443, 2872, 2903, 2908 |
| TseFI | GTSAC | 2 cut(s) | 98, 3191 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 3191 |
| TspGWI | ACGGA | 3 cut(s) | 2041, 2251, 3232 |
| TspRI | CASTG | 6 cut(s) | 482, 535, 2443, 2872, 2903, 2908 |
| Vha464I | CTTAAG | 2 cut(s) | 122, 1499 |
| VpaK11BI | GGWCC | 2 cut(s) | 817, 1189 |
| XapI | RAATTY | 4 cut(s) | 524, 896, 1085, 2961 |
| XbaI | TCTAGA | 1 cut(s) | 1486 |
| XceI | RCATGY | 2 cut(s) | 338, 2168 |
| XmnI | GAANNNNTTC | 2 cut(s) | 524, 2181 |
| XspI | CTAG | 9 cut(s) | 389, 951, 1379, 1397, 1487, 2364, 2403, 2829, 3185 |
| ZrmI | AGTACT | 1 cut(s) | 2820 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |