Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Forward (+)

26311311 .. 26318857

Gene Structure 7547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGAGAAGCGCCGTTGCCTCAGGTTTTCATAGAAATTACATCCTCTGTGCTTCACGCGCCGCCACTTCCACGACGCGCCTCCACTCTTTGTCCTCCCTCAGAAACTTTCCCTCTTCCTCTCTCAGGATTCGTCACTGTCCTTCTCCCATCTCTTCCAATTTCATCGTTAGTGAAGTTTCCCGAAACCGACGATGCGACGCCGTTTCTTCCAGCACCACCGATGTGACTGAATTAGCCGAAATTGATTGGGACAAGATTGATTTTGGGCTTAAACCAACGGATTACATGTACGCCATGAAATGTAGCCGTGATGGTGAATTCTCTCAAGGTCAATTGCAACCTTTTGGTAACATTGACATTAACCCAGCAGCTGGTGTTCTCAACTATGGACAAGGTTTGTTTGAAGGTCTAAAAGCTTACAGAAAACAAGATGGGAATATTCTACTCTTCCGTCCTGAGGAGAATGCGATCCGAATGAGAAATGGCGCTGAAAGAATGTGTATGCCTTCTCCAACCGTTGAACAGTTTGTTGAGGCTGTGAAAACTACTGTATTAGCTAACAAACGCTGGATTCCACCTCCAGGTAAAGGATCATTATACATAAGGCCATTGCTAATGGGAACTGGAGCTGTTCTTGGTCTTGCTCCTGCTCCTGAATACACTTTCCTTATCTTTGTTTCACCTGTCGGGAACTACTTCAAGGAAGGTGTTGCGCCGATCAACTTAATTGTTGAAACTGAATTCCATCGTGCAACTCCCGGCGGTACTGGAGGTGTTAAAACCATCGGTAATTATGCTGCAGTCTTGAAGGCTCAGTCGATTGCGAAAGCTAAAGGGTATTCTGATGTTTTATACCTTGATTGCCTTCACAAAAGATATCTTGAGGAGGTTTCATCGTGCAATATTTTCATTGTGAAGGATAATGTGATATCTACTCCTGAAATTAAAGGAACCATCTTGCCTGGAATTACCCGGAAGAGTATCATCGAAGTAGCTCGTAGCCAAGGTTTCAAGGTGGAGGAACGAAATGTGACAGTTGATGAATTGGTAGAAGCAGACGAGGTTTTCTGCACAGGAACCGCCGTTGTTTTATCTCCGGTTGGAAGCATCACTTACAAAAGCCAAAGGTTTTCTTATGGAGAAGATGGCTTTGGAACAGTCTCGAAACAACTCTACACTTCCTTGACGAGCCTGCAAATGGGTCTGAGCGAAGATAACATGAACTGGACTGTTCAATTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010369 GO:0016043 GO:0031974 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

45.58

Weight (kDa)

8.03

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccII	CGCG	2 cut(s)	60, 79
AciI	CCGC	3 cut(s)	63, 765, 1083
AclWI	GGATC	2 cut(s)	466, 601
AcsI	RAATTY	2 cut(s)	320, 743
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	2 cut(s)	293, 769
AfiI	CCNNNNNNNGG	6 cut(s)	126, 374, 460, 584, 590, 1201
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	7 cut(s)	407, 524, 703, 737, 811, 1015, 1238
AjnI	CCWGG	2 cut(s)	583, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	1137, 1169
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	6 cut(s)	374, 419, 560, 632, 833, 998
AluI	AGCT	6 cut(s)	374, 419, 560, 632, 833, 998
Alw26I	GTCTC	1 cut(s)	1168
AlwI	GGATC	2 cut(s)	466, 601
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	371, 800
ApoI	RAATTY	2 cut(s)	320, 743
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	5 cut(s)	14, 62, 81, 491, 718
AsuC2I	CCSGG	2 cut(s)	762, 976
AsuHPI	GGTGA	2 cut(s)	329, 675
AxyI	CCTNAGG	2 cut(s)	22, 459
BbvI	GCAGC	2 cut(s)	383, 787
BccI	CCATC	7 cut(s)	158, 308, 428, 756, 794, 965, 1142
BceAI	ACGGC	3 cut(s)	188, 294, 1070
BciT130I	CCWGG	2 cut(s)	585, 966
BcnI	CCSGG	2 cut(s)	762, 976
BcoDI	GTCTC	1 cut(s)	1168
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	2 cut(s)	15, 492
BisI	GCNGC	3 cut(s)	63, 372, 801
BlsI	GCNGC	3 cut(s)	64, 373, 802
Bme1390I	CCNGG	4 cut(s)	585, 762, 966, 976
BmiI	GGNNCC	2 cut(s)	955, 1081
BmrFI	CCNGG	4 cut(s)	585, 762, 966, 976
BmsI	GCATC	2 cut(s)	185, 1119
BpmI	CTGGAG	3 cut(s)	567, 648, 792
BpuEI	CTTGAG	2 cut(s)	312, 905
BpuMI	CCSGG	2 cut(s)	762, 976
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	1006
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 374, 460, 584, 590, 1201
Bse1I	ACTGG	3 cut(s)	631, 775, 1232
Bse21I	CCTNAGG	2 cut(s)	22, 459
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	2 cut(s)	585, 966
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	6 cut(s)	126, 374, 460, 584, 590, 1201
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	6 cut(s)	36, 115, 139, 450, 830, 1199
BseNI	ACTGG	3 cut(s)	631, 775, 1232
BseRI	GAGGAG	2 cut(s)	476, 902
BseXI	GCAGC	2 cut(s)	383, 787
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	1057
Bsh1236I	CGCG	2 cut(s)	60, 79
BshFI	GGCC	1 cut(s)	610
BsiSI	CCGG	3 cut(s)	762, 976, 1100
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	6 cut(s)	126, 374, 460, 584, 590, 1201
BsmAI	GTCTC	1 cut(s)	1168
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	471, 593, 720
BspACI	CCGC	3 cut(s)	63, 765, 1083
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	6 cut(s)	35, 114, 138, 451, 829, 1200
BspFNI	CGCG	2 cut(s)	60, 79
BspLI	GGNNCC	2 cut(s)	955, 1081
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	2 cut(s)	466, 601
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	3 cut(s)	631, 775, 1232
BssECI	CCNNGG	1 cut(s)	1006
BssMI	GATC	3 cut(s)	471, 593, 720
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	1006
Bst2UI	CCWGG	2 cut(s)	585, 966
Bst4CI	ACNGT	7 cut(s)	140, 520, 528, 553, 1039, 1162, 1234
Bst6I	CTCTTC	4 cut(s)	121, 160, 455, 974
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	1196
BstDEI	CTNAG	6 cut(s)	22, 101, 125, 459, 816, 1208
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	60, 79
BstH2I	RGCGCY	2 cut(s)	15, 492
BstHHI	GCGC	5 cut(s)	14, 62, 81, 491, 718
BstKTI	GATC	3 cut(s)	474, 596, 723
BstMAI	GTCTC	1 cut(s)	1168
BstMBI	GATC	3 cut(s)	471, 593, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	585, 966
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	4 cut(s)	583, 760, 964, 974
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	2 cut(s)	60, 79
BstV1I	GCAGC	2 cut(s)	383, 787
Bsu36I	CCTNAGG	2 cut(s)	22, 459
BsuRI	GGCC	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	1196
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	5 cut(s)	14, 62, 81, 491, 718
CseI	GACGC	2 cut(s)	85, 209
Csp6I	GTAC	2 cut(s)	292, 768
CviAII	CATG	3 cut(s)	289, 298, 1222
CviQI	GTAC	2 cut(s)	292, 768
DdeI	CTNAG	6 cut(s)	22, 101, 125, 459, 816, 1208
DpnI	GATC	3 cut(s)	473, 595, 722
DpnII	GATC	3 cut(s)	471, 593, 720
Eam1104I	CTCTTC	4 cut(s)	121, 160, 455, 974
EarI	CTCTTC	4 cut(s)	121, 160, 455, 974
Eco130I	CCWWGG	1 cut(s)	1006
Eco32I	GATATC	2 cut(s)	881, 933
Eco81I	CCTNAGG	2 cut(s)	22, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRI	GAATTC	2 cut(s)	320, 743
EcoRII	CCWGG	2 cut(s)	583, 964
EcoRV	GATATC	2 cut(s)	881, 933
EcoT14I	CCWWGG	1 cut(s)	1006
ErhI	CCWWGG	1 cut(s)	1006
FaeI	CATG	3 cut(s)	292, 301, 1225
FalI	AAGNNNNNCTT	4 cut(s)	1099, 1131, 1120, 1152
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	288, 297, 1221
Fnu4HI	GCNGC	3 cut(s)	63, 372, 801
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	63, 372, 801
GlaI	GCGC	5 cut(s)	13, 61, 80, 490, 717
GluI	GCNGC	3 cut(s)	63, 372, 801
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	3 cut(s)	567, 648, 792
HaeII	RGCGCY	2 cut(s)	15, 492
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	3 cut(s)	762, 976, 1100
HgaI	GACGC	2 cut(s)	85, 209
HhaI	GCGC	5 cut(s)	14, 62, 81, 491, 718
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	292, 301, 1225
Hin6I	GCGC	5 cut(s)	12, 60, 79, 489, 716
HinP1I	GCGC	5 cut(s)	12, 60, 79, 489, 716
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	130, 574
HpaII	CCGG	3 cut(s)	762, 976, 1100
HphI	GGTGA	2 cut(s)	329, 675
Hpy188I	TCNGA	4 cut(s)	104, 476, 847, 1209
Hpy188III	TCNNGA	9 cut(s)	127, 183, 458, 656, 691, 808, 884, 941, 1165
Hpy99I	CGWCG	3 cut(s)	79, 195, 203
HpyAV	CCTTC	7 cut(s)	153, 401, 519, 701, 805, 878, 913
HpyCH4III	ACNGT	7 cut(s)	140, 520, 528, 553, 1039, 1162, 1234
HpyCH4V	TGCA	6 cut(s)	340, 755, 803, 903, 1074, 1198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	6 cut(s)	22, 101, 125, 459, 816, 1208
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	292, 301, 1225
HspAI	GCGC	5 cut(s)	12, 60, 79, 489, 716
Kzo9I	GATC	3 cut(s)	471, 593, 720
LmnI	GCTCC	3 cut(s)	629, 652, 658
Lsp1109I	GCAGC	2 cut(s)	383, 787
LweI	GCATC	2 cut(s)	185, 1119
MaeIII	GTNAC	4 cut(s)	134, 226, 350, 1033
MalI	GATC	3 cut(s)	473, 595, 722
MboI	GATC	3 cut(s)	471, 593, 720
MboII	GAAGA	7 cut(s)	108, 147, 201, 442, 991, 1157, 1226
MfeI	CAATTG	2 cut(s)	335, 1238
MmeI	TCCRAC	2 cut(s)	539, 1084
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	6 cut(s)	273, 363, 728, 780, 948, 1246
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	762, 976, 1100
MspR9I	CCNGG	4 cut(s)	585, 762, 966, 976
MunI	CAATTG	2 cut(s)	335, 1238
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	2 cut(s)	585, 966
MvnI	CGCG	2 cut(s)	60, 79
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	2 cut(s)	762, 976
NdeII	GATC	3 cut(s)	471, 593, 720
NlaIII	CATG	3 cut(s)	292, 301, 1225
NlaIV	GGNNCC	2 cut(s)	955, 1081
NmuCI	GTSAC	3 cut(s)	134, 226, 1033
NspI	RCATGY	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	288
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	130, 574
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	64, 373, 802
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	583, 964
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	583, 964
PspN4I	GGNNCC	2 cut(s)	955, 1081
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	293, 769
RsaNI	GTAC	2 cut(s)	292, 768
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	6 cut(s)	273, 363, 728, 780, 948, 1246
SatI	GCNGC	3 cut(s)	63, 372, 801
Sau3AI	GATC	3 cut(s)	471, 593, 720
ScrFI	CCNGG	4 cut(s)	585, 762, 966, 976
SfaNI	GCATC	2 cut(s)	185, 1119
SfcI	CTRYAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	327, 884
SmoI	CTYRAG	2 cut(s)	327, 884
SsiI	CCGC	3 cut(s)	63, 765, 1083
SspI	AATATT	2 cut(s)	442, 907
StyD4I	CCNGG	4 cut(s)	583, 760, 964, 974
StyI	CCWWGG	1 cut(s)	1006
TaaI	ACNGT	7 cut(s)	140, 520, 528, 553, 1039, 1162, 1234
TaqI	TCGA	3 cut(s)	821, 990, 1166
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	130, 574
Tru1I	TTAA	6 cut(s)	273, 363, 728, 780, 948, 1246
Tru9I	TTAA	6 cut(s)	273, 363, 728, 780, 948, 1246
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	3 cut(s)	134, 226, 1033
TseI	GCWGC	2 cut(s)	371, 800
Tsp45I	GTSAC	3 cut(s)	134, 226, 1033
TspDTI	ATGAA	7 cut(s)	20, 154, 314, 885, 901, 1059, 1238
TspGWI	ACGGA	2 cut(s)	296, 443
TspRI	CASTG	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	320, 743
XceI	RCATGY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.