Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Forward (+)

22210608 .. 22216091

Gene Structure 5484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGAGCAGCGCCGTCCTTGGAGGTCTTCAGCCAAATTTCCCACTTTGCCCCTCCCGCAATCCTTCTTCCACTCCTCTCCTCCGCCCCTTCTCCACCTCCCATTCCTCTCCTTCTCTCTCTGTCAAGCTCCAAAAGCAGCTTCCTTTGGCTTCTTATCAAGCAGCCTCTCCCTCTCCCTTTCGTCGATATTCCACATTGTCTAATACTTTTGTCAATGAAACAAGTGAATTAGCTGACATAGAATGGGACAGCCTCGGCTTTGCGTTTCTTGCTACTGATTATATGTACGTCATGAAATGCGCCCAAGGTGAAAACTTTTCTAAAGGTGAATTACAGCGTTTTGGGAACATTGAATTGAGCCCCTCAGCTGGAGTCTTGAACTATGGGCAGGGATTATTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCTGAGGAAAATGCATTGCGGATGAGGTTGGGTGCAGAGCGAATGTGTATGCCATCACCATCTGTCGAACAGTTTGTGGAAGCTGTAAAGGCTACTGTTTTAGCAAATAAACGTTGGGTTCCCCCTTCAGGCAAAGGTTCCCTGTATATCAGGCCATTGCTAATGGGAAGTGGTGCTGTTCTTGGTCTGGCACCTGCTCCTGAGTACACATTTCTGATTTATGTTTCACCCGTTGGAAACTATTTTAAGGAAGGTGTTGCACCGATAAATTTGATTGTTGAGCATGAATTGCATCGTGCTACTCCTGGTGGCACTGGAGGTGTTAAGACTATAGGGAATTATGCTGCGGTTCTGAAGGCTCAGTCTGCTGCAAAAGCAAAAGGCTATTCTGATGTTCTATACCTTGATTGTGTTCACAAAAGATATCTAGAGGAGGTTTCCTCATGCAACATTTTTGTTGTGAAGGATAATATTATCTCTACTCCTGAAATCAAAGGAACTATCTTACCTGGCATTACTCGAAAGAGTATAATTGATGTTGCTCGTAGCGAAGGATTCCAGGTTGAGGAGCGGCAAGTGGCAGTTGATGAATTACTAGATGCTGATGAAGTCTTTTGTACGGGAACAGCTGTGGTTGTATCACCTGTTGGCAGCATCACTTATCACGGGAAAAGGGTGTCTTATGGAGAGGGCGGGTTTGGAGCTGTGTCGGAAAAGCTCTACTCTGTGCTTACCAGACTACAGATGGGCCTCACACAGGACAAGATGGATTGGACTGTTGAGGTAAGGCAAAAAACATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

419

Amino Acids

45.66

Weight (kDa)

7.57

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	1024
AciI	CCGC	6 cut(s)	58, 85, 472, 800, 1024, 1146
AclI	AACGTT	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	37, 721
AcuI	CTGAAG	3 cut(s)	14, 564, 827
AfaI	GTAC	3 cut(s)	290, 659, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	371, 581, 1018, 1210
AgsI	TTSAA	3 cut(s)	356, 382, 404
AjnI	CCWGG	3 cut(s)	757, 961, 1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	8 cut(s)	130, 142, 236, 371, 536, 1082, 1157, 1171
AluI	AGCT	8 cut(s)	130, 142, 236, 371, 536, 1082, 1157, 1171
AoxI	GGCC	2 cut(s)	605, 1201
ApeKI	GCWGC	6 cut(s)	9, 139, 164, 797, 821, 1104
ApoI	RAATTY	2 cut(s)	37, 721
AspLEI	GCGC	2 cut(s)	14, 305
AspS9I	GGNCC	1 cut(s)	1201
AsuHPI	GGTGA	5 cut(s)	323, 341, 501, 672, 1086
AxyI	CCTNAGG	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	6 cut(s)	21, 151, 176, 784, 808, 1116
BccI	CCATC	5 cut(s)	425, 514, 520, 1192, 1213
BciT130I	CCWGG	3 cut(s)	759, 963, 1013
BfaI	CTAG	2 cut(s)	881, 1049
BfmI	CTRYAG	3 cut(s)	418, 783, 1193
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	7 cut(s)	10, 140, 165, 798, 822, 1025, 1105
BlsI	GCNGC	7 cut(s)	11, 141, 166, 799, 823, 1026, 1106
Bme1390I	CCNGG	3 cut(s)	759, 963, 1013
BmgT120I	GGNCC	1 cut(s)	1201
BmiI	GGNNCC	3 cut(s)	573, 592, 645
BmrFI	CCNGG	3 cut(s)	759, 963, 1013
BmsI	GCATC	3 cut(s)	754, 1042, 1116
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
BpmI	CTGGAG	2 cut(s)	393, 789
Bpu10I	CCTNAGC	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	19, 256, 307
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 581, 1018, 1210
Bse1I	ACTGG	1 cut(s)	772
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	467, 608
BseBI	CCWGG	3 cut(s)	759, 963, 1013
BseDI	CCNNGG	3 cut(s)	19, 256, 307
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	4 cut(s)	371, 581, 1018, 1210
BseMI	GCAATG	2 cut(s)	467, 608
BseMII	CTCAG	4 cut(s)	381, 447, 645, 827
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	4 cut(s)	66, 71, 899, 1034
BseXI	GCAGC	6 cut(s)	21, 151, 176, 784, 808, 1116
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	607, 1203
BshNI	GGYRCC	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	371, 581, 1018, 1210
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	607, 1203
Bsp1286I	GDGCHC	1 cut(s)	365
BspACI	CCGC	6 cut(s)	58, 85, 472, 800, 1024, 1146
BspANI	GGCC	2 cut(s)	607, 1203
BspCNI	CTCAG	4 cut(s)	380, 448, 646, 826
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	573, 592, 645
BspMI	ACCTGC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	1024
BsrDI	GCAATG	2 cut(s)	467, 608
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	3 cut(s)	19, 256, 307
BssT1I	CCWWGG	2 cut(s)	19, 307
Bst2UI	CCWGG	3 cut(s)	759, 963, 1013
Bst4CI	ACNGT	3 cut(s)	525, 550, 1231
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstDEI	CTNAG	4 cut(s)	367, 456, 654, 813
BstENI	CCTNNNNNAGG	1 cut(s)	1208
BstF5I	GGATG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 305
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 136, 272, 542, 742, 818, 827
BstNI	CCWGG	3 cut(s)	759, 963, 1013
BstSCI	CCNGG	3 cut(s)	757, 961, 1011
BstSFI	CTRYAG	3 cut(s)	418, 783, 1193
BstV1I	GCAGC	6 cut(s)	21, 151, 176, 784, 808, 1116
BstV2I	GAAGAC	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	607, 1203
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	14, 305
Cfr13I	GGNCC	1 cut(s)	1201
Csp6I	GTAC	3 cut(s)	289, 658, 1071
CviAII	CATG	3 cut(s)	295, 737, 897
CviQI	GTAC	3 cut(s)	289, 658, 1071
DdeI	CTNAG	4 cut(s)	367, 456, 654, 813
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	19, 307
Eco24I	GRGCYC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	878
Eco57I	CTGAAG	3 cut(s)	14, 564, 827
Eco81I	CCTNAGG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	1208
EcoRII	CCWGG	3 cut(s)	757, 961, 1011
EcoRV	GATATC	1 cut(s)	878
EcoT14I	CCWWGG	2 cut(s)	19, 307
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	2 cut(s)	19, 307
FaeI	CATG	3 cut(s)	298, 740, 900
FalI	AAGNNNNNCTT	2 cut(s)	1117, 1149
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	294, 736, 896
FauI	CCCGC	2 cut(s)	65, 1139
Fnu4HI	GCNGC	7 cut(s)	10, 140, 165, 798, 822, 1025, 1105
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	7 cut(s)	10, 140, 165, 798, 822, 1025, 1105
FspBI	CTAG	2 cut(s)	881, 1049
GlaI	GCGC	2 cut(s)	13, 304
GluI	GCNGC	7 cut(s)	10, 140, 165, 798, 822, 1025, 1105
GsuI	CTGGAG	2 cut(s)	393, 789
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	607, 1203
HhaI	GCGC	2 cut(s)	14, 305
Hin1II	CATG	3 cut(s)	298, 740, 900
Hin6I	GCGC	2 cut(s)	12, 303
HinP1I	GCGC	2 cut(s)	12, 303
HinfI	GANTC	2 cut(s)	375, 1008
HphI	GGTGA	5 cut(s)	323, 341, 501, 672, 1086
Hpy166II	GTNNAC	2 cut(s)	660, 868
Hpy188I	TCNGA	4 cut(s)	669, 807, 844, 1165
Hpy188III	TCNNGA	6 cut(s)	295, 379, 455, 653, 881, 938
Hpy8I	GTNNAC	2 cut(s)	660, 868
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	9 cut(s)	75, 100, 123, 398, 588, 698, 802, 910, 998
HpyCH4III	ACNGT	3 cut(s)	525, 550, 1231
HpyCH4IV	ACGT	2 cut(s)	291, 565
HpyCH4V	TGCA	6 cut(s)	467, 488, 713, 745, 824, 900
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 136, 272, 542, 742, 818, 827
HpyF3I	CTNAG	4 cut(s)	367, 456, 654, 813
HpySE526I	ACGT	2 cut(s)	291, 565
Hsp92II	CATG	3 cut(s)	298, 740, 900
HspAI	GCGC	2 cut(s)	12, 303
LmnI	GCTCC	4 cut(s)	135, 655, 1021, 1154
Lsp1109I	GCAGC	6 cut(s)	21, 151, 176, 784, 808, 1116
LweI	GCATC	3 cut(s)	754, 1042, 1116
MaeI	CTAG	2 cut(s)	881, 1049
MaeII	ACGT	2 cut(s)	291, 565
MbiI	CCGCTC	1 cut(s)	1024
MboII	GAAGA	2 cut(s)	20, 60
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	9 cut(s)	37, 230, 332, 356, 721, 740, 790, 984, 1043
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	667, 1143
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	2 cut(s)	699, 777
MspA1I	CMGCKG	2 cut(s)	371, 1082
MspR9I	CCNGG	3 cut(s)	759, 963, 1013
MvaI	CCWGG	3 cut(s)	759, 963, 1013
MwoI	GCNNNNNNNGC	7 cut(s)	57, 136, 272, 542, 742, 818, 827
NlaIII	CATG	3 cut(s)	298, 740, 900
NlaIV	GGNNCC	3 cut(s)	573, 592, 645
NmeAIII	GCCGAG	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	469
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	1008
PkrI	GCNGC	7 cut(s)	11, 141, 166, 799, 823, 1026, 1106
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp1406I	AACGTT	1 cut(s)	565
Psp6I	CCWGG	3 cut(s)	757, 961, 1011
PspGI	CCWGG	3 cut(s)	757, 961, 1011
PspN4I	GGNNCC	3 cut(s)	573, 592, 645
PspPI	GGNCC	1 cut(s)	1201
PvuII	CAGCTG	2 cut(s)	371, 1082
RsaI	GTAC	3 cut(s)	290, 659, 1072
RsaNI	GTAC	3 cut(s)	289, 658, 1071
SaqAI	TTAA	2 cut(s)	699, 777
SatI	GCNGC	7 cut(s)	10, 140, 165, 798, 822, 1025, 1105
Sau96I	GGNCC	1 cut(s)	1201
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	3 cut(s)	759, 963, 1013
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	3 cut(s)	754, 1042, 1116
SfcI	CTRYAG	3 cut(s)	418, 783, 1193
Sse9I	AATT	9 cut(s)	37, 230, 332, 356, 721, 740, 790, 984, 1043
SsiI	CCGC	6 cut(s)	58, 85, 472, 800, 1024, 1146
SspI	AATATT	1 cut(s)	925
SspMI	CTAG	2 cut(s)	881, 1049
StyD4I	CCNGG	3 cut(s)	757, 961, 1011
StyI	CCWWGG	2 cut(s)	19, 307
TaaI	ACNGT	3 cut(s)	525, 550, 1231
TaiI	ACGT	2 cut(s)	294, 568
TaqI	TCGA	3 cut(s)	187, 519, 973
TasI	AATT	9 cut(s)	37, 230, 332, 356, 721, 740, 790, 984, 1043
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	1027
TfiI	GAWTC	1 cut(s)	1008
Tru1I	TTAA	2 cut(s)	699, 777
Tru9I	TTAA	2 cut(s)	699, 777
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	6 cut(s)	9, 139, 164, 797, 821, 1104
TspDTI	ATGAA	6 cut(s)	234, 311, 425, 753, 1056, 1074
TspRI	CASTG	1 cut(s)	772
XagI	CCTNNNNNAGG	1 cut(s)	1208
XapI	RAATTY	2 cut(s)	37, 721
XbaI	TCTAGA	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1195
XspI	CTAG	2 cut(s)	881, 1049
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.