Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

29271280 .. 29276701

Gene Structure 5422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1302500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGAGCAGCGCCGTCCTTGGAGGTCTTCAGCTAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCCTCTCTTCCCATCCGCCCCTTCTCCTTCACCTCCCATTCCTCTCCTCTCTCCCTCAAGCTCCAGAAGCAGCTTCCCTTGACTTCTCATGGAGCTTCCGCCGCCTCCTCTCCCATTTGCCCATATGCCACATTGTCCGATACATTCGTTGAAACAAGCGAATTAGCTGACATCGAATGGGACAACCTCGGCTTTGCGTTTCTTTCTACCGACTACATGTACGTTATGAAATGTGCTCAAGGCGGAAGCTTTTCCAAAGGTGAATTACAGCGTTTTGGGAACATCGAATTGAGCCCCTCAGCCGGAGTCTTGAATTATGGGCAGGGACTTTTTGAAGGTTTGAAAGCCTACAGGAAAGAAGATGGTACAATACTCTTGTTTCGTCCCGAGGAAAATGCATTGCGGATGAGGTTGGGTGCAGAGCGGATGTGTATGCCATCACCAACTGTCGAACAGTTTGTCGAAGCTGTAAAGGCTACTGTTTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGGAAAGGTTCCCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTACACATTTCTTATTTATGTTTCACCTGTTGGAAACTATTTTAAGGAAGGCGTTGCACCAATAAATTTGATTGTCGAACATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGGGTCAAGACTATAGGGAATTATGCCGCAGTTTTGAAGGCACAGTCTGCCGCGAAAGCAAAAGGCTATTCAGATGTTTTATACCTCGACTGTGTTCACAAAAGATATCTAGAAGAGGTTTCCTCGTGCAATATTTTTGTTGTGAAGGATAATGTTATCTCTACTCCTGCAATAAAAGGGACAATCTTACCTGGCATTACTCGAAAGAGTATAATTGACGTTGCTCGTAGTGAAGGATTGCAGGTTGAGGAGCGCCAAGTGGCAGTGGAGGATTTACTTGATGCTGATGAAGTCTTTTGTACCGGAACAGCTGTGGTTGTATCACCTGTTGGCAGCATAACGTATCTTGGAAAAAGGGTTTGTTATGGAGATGGTTTTGGAGACGTGTCGGAAAAGCTCTACTCTGTGCTTACCAGATTACAGATGGGTCTTTCTGAGGACAAGATGGATTGGACTGTTGAGCTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

414

Amino Acids

44.76

Weight (kDa)

5.86

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	132 - 370	3.2e-37	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	2 cut(s)	655, 1003
AccBSI	CCGCTC	1 cut(s)	493
AccII	CGCG	1 cut(s)	824
AciI	CCGC	9 cut(s)	58, 85, 168, 171, 312, 472, 493, 798, 822
AclI	AACGTT	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	5 cut(s)	290, 436, 659, 766, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	371, 581, 582, 587
AflIII	ACRYGT	2 cut(s)	285, 1155
AgsI	TTSAA	5 cut(s)	221, 382, 404, 412, 808
AjiI	CACGTC	1 cut(s)	1156
AjnI	CCWGG	3 cut(s)	580, 757, 961
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	1146
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	9, 139, 1104
ApoI	RAATTY	1 cut(s)	721
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	14, 1026
AsuHPI	GGTGA	5 cut(s)	91, 341, 501, 672, 1086
AvaI	CYCGRG	1 cut(s)	455
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BanII	GRGCYC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	895
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	3 cut(s)	21, 151, 1116
BccI	CCATC	6 cut(s)	89, 425, 514, 1136, 1189, 1210
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	3 cut(s)	582, 759, 963
BcoDI	GTCTC	1 cut(s)	1146
BfaI	CTAG	1 cut(s)	881
BfmI	CTRYAG	2 cut(s)	418, 783
BfoI	RGCGCY	2 cut(s)	15, 1027
BfuAI	ACCTGC	2 cut(s)	655, 1003
BisI	GCNGC	6 cut(s)	10, 140, 171, 798, 822, 1105
BlsI	GCNGC	6 cut(s)	11, 141, 172, 799, 823, 1106
Bme1390I	CCNGG	3 cut(s)	582, 759, 963
BmeT110I	CYCGRG	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	1156
BmiI	GGNNCC	2 cut(s)	573, 592
BmrFI	CCNGG	3 cut(s)	582, 759, 963
BmsI	GCATC	2 cut(s)	754, 1042
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
BpmI	CTGGAG	3 cut(s)	116, 564, 789
Bpu10I	CCTNAGC	2 cut(s)	367, 1235
BpuEI	CTTGAG	2 cut(s)	110, 291
BsaJI	CCNNGG	4 cut(s)	19, 256, 456, 581
BsaWI	WCCGGW	1 cut(s)	1073
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 581, 582, 587
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	2 cut(s)	467, 608
BseBI	CCWGG	3 cut(s)	582, 759, 963
BseDI	CCNNGG	4 cut(s)	19, 256, 456, 581
BseGI	GGATG	3 cut(s)	81, 480, 501
BseLI	CCNNNNNNNGG	4 cut(s)	371, 581, 582, 587
BseMI	GCAATG	2 cut(s)	467, 608
BseMII	CTCAG	3 cut(s)	381, 645, 1197
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	3 cut(s)	105, 166, 1034
BseXI	GCAGC	3 cut(s)	21, 151, 1116
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	372, 1074
BslFI	GGGAC	4 cut(s)	263, 408, 438, 964
BslI	CCNNNNNNNGG	4 cut(s)	371, 581, 582, 587
BsmAI	GTCTC	1 cut(s)	1146
BsmBI	CGTCTC	1 cut(s)	1146
BsmFI	GGGAC	4 cut(s)	263, 408, 438, 964
BsnI	GGCC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	307, 365
BspACI	CCGC	9 cut(s)	58, 85, 168, 171, 312, 472, 493, 798, 822
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	3 cut(s)	380, 646, 1198
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	2 cut(s)	573, 592
BspMI	ACCTGC	2 cut(s)	655, 1003
BsrBI	CCGCTC	1 cut(s)	493
BsrDI	GCAATG	2 cut(s)	467, 608
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	4 cut(s)	19, 256, 456, 581
BssSI	CACGAG	1 cut(s)	895
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	895
Bst2UI	CCWGG	3 cut(s)	582, 759, 963
Bst4CI	ACNGT	6 cut(s)	517, 525, 550, 816, 863, 1228
Bst6I	CTCTTC	2 cut(s)	81, 879
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstDEI	CTNAG	4 cut(s)	367, 654, 1206, 1235
BstF5I	GGATG	3 cut(s)	81, 480, 501
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	2 cut(s)	15, 1027
BstHHI	GCGC	2 cut(s)	14, 1026
BstMAI	GTCTC	1 cut(s)	1146
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 136, 170, 542, 818, 827
BstNI	CCWGG	3 cut(s)	582, 759, 963
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	3 cut(s)	580, 757, 961
BstSFI	CTRYAG	2 cut(s)	418, 783
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	3 cut(s)	21, 151, 1116
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	1156
BtsCI	GGATG	3 cut(s)	81, 480, 501
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	1 cut(s)	1041
BveI	ACCTGC	2 cut(s)	655, 1003
CfoI	GCGC	2 cut(s)	14, 1026
Csp6I	GTAC	5 cut(s)	289, 435, 658, 765, 1071
CviAII	CATG	3 cut(s)	158, 286, 737
CviQI	GTAC	5 cut(s)	289, 435, 658, 765, 1071
DdeI	CTNAG	4 cut(s)	367, 654, 1206, 1235
Eam1104I	CTCTTC	2 cut(s)	81, 879
EarI	CTCTTC	2 cut(s)	81, 879
EciI	GGCGGA	3 cut(s)	74, 157, 327
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	878
Eco57I	CTGAAG	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	3 cut(s)	580, 757, 961
EcoRV	GATATC	1 cut(s)	878
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	1146
FaeI	CATG	3 cut(s)	161, 289, 740
FaqI	GGGAC	4 cut(s)	263, 408, 438, 964
FatI	CATG	3 cut(s)	157, 285, 736
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	6 cut(s)	10, 140, 171, 798, 822, 1105
FokI	GGATG	3 cut(s)	68, 487, 508
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	6 cut(s)	10, 140, 171, 798, 822, 1105
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	2 cut(s)	13, 1025
GluI	GCNGC	6 cut(s)	10, 140, 171, 798, 822, 1105
GsuI	CTGGAG	3 cut(s)	116, 564, 789
HaeII	RGCGCY	2 cut(s)	15, 1027
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	2 cut(s)	372, 1074
HhaI	GCGC	2 cut(s)	14, 1026
Hin1II	CATG	3 cut(s)	161, 289, 740
Hin6I	GCGC	2 cut(s)	12, 1024
HinP1I	GCGC	2 cut(s)	12, 1024
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	372, 1074
HphI	GGTGA	5 cut(s)	91, 341, 501, 672, 1086
Hpy166II	GTNNAC	2 cut(s)	660, 868
Hpy188I	TCNGA	4 cut(s)	208, 844, 1162, 1207
Hpy188III	TCNNGA	6 cut(s)	133, 379, 455, 653, 778, 881
Hpy8I	GTNNAC	2 cut(s)	660, 868
HpyAV	CCTTC	9 cut(s)	53, 75, 100, 106, 398, 698, 802, 910, 998
HpyCH4III	ACNGT	6 cut(s)	517, 525, 550, 816, 863, 1228
HpyCH4IV	ACGT	5 cut(s)	291, 565, 990, 1112, 1155
HpyCH4V	TGCA	9 cut(s)	467, 488, 644, 713, 745, 752, 900, 941, 1012
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 136, 170, 542, 818, 827
HpyF3I	CTNAG	4 cut(s)	367, 654, 1206, 1235
HpySE526I	ACGT	5 cut(s)	291, 565, 990, 1112, 1155
Hsp92II	CATG	3 cut(s)	161, 289, 740
HspAI	GCGC	2 cut(s)	12, 1024
LmnI	GCTCC	4 cut(s)	135, 161, 655, 1021
Lsp1109I	GCAGC	3 cut(s)	21, 151, 1116
LweI	GCATC	2 cut(s)	754, 1042
MaeI	CTAG	1 cut(s)	881
MaeII	ACGT	5 cut(s)	291, 565, 990, 1112, 1155
MbiI	CCGCTC	1 cut(s)	493
MboII	GAAGA	5 cut(s)	20, 60, 68, 440, 896
MhlI	GDGCHC	2 cut(s)	307, 365
MluCI	AATT	9 cut(s)	37, 230, 332, 356, 382, 721, 740, 790, 984
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	667, 1140
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	1082
MspI	CCGG	2 cut(s)	372, 1074
MspR9I	CCNGG	3 cut(s)	582, 759, 963
MvaI	CCWGG	3 cut(s)	582, 759, 963
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	6 cut(s)	57, 136, 170, 542, 818, 827
NdeI	CATATG	1 cut(s)	193
NlaIII	CATG	3 cut(s)	161, 289, 740
NlaIV	GGNNCC	2 cut(s)	573, 592
NmeAIII	GCCGAG	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	655
PciI	ACATGT	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	319
PkrI	GCNGC	6 cut(s)	11, 141, 172, 799, 823, 1106
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PscI	ACATGT	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	565
Psp6I	CCWGG	3 cut(s)	580, 757, 961
PspGI	CCWGG	3 cut(s)	580, 757, 961
PspN4I	GGNNCC	2 cut(s)	573, 592
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	5 cut(s)	290, 436, 659, 766, 1072
RsaNI	GTAC	5 cut(s)	289, 435, 658, 765, 1071
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	6 cut(s)	10, 140, 171, 798, 822, 1105
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	3 cut(s)	582, 759, 963
SduI	GDGCHC	2 cut(s)	307, 365
SfaNI	GCATC	2 cut(s)	754, 1042
SfcI	CTRYAG	2 cut(s)	418, 783
SmlI	CTYRAG	2 cut(s)	125, 306
SmoI	CTYRAG	2 cut(s)	125, 306
Sse9I	AATT	9 cut(s)	37, 230, 332, 356, 382, 721, 740, 790, 984
SsiI	CCGC	9 cut(s)	58, 85, 168, 171, 312, 472, 493, 798, 822
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	3 cut(s)	580, 757, 961
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	6 cut(s)	517, 525, 550, 816, 863, 1228
TaiI	ACGT	5 cut(s)	294, 568, 993, 1115, 1158
TaqI	TCGA	7 cut(s)	243, 354, 519, 531, 732, 858, 973
TasI	AATT	9 cut(s)	37, 230, 332, 356, 382, 721, 740, 790, 984
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	3 cut(s)	173, 800, 824
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	1 cut(s)	1041
TseI	GCWGC	3 cut(s)	9, 139, 1104
TspDTI	ATGAA	3 cut(s)	311, 753, 1074
TspRI	CASTG	1 cut(s)	1041
XapI	RAATTY	1 cut(s)	721
XbaI	TCTAGA	1 cut(s)	880
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1192
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	1 cut(s)	881
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.