Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Forward (+)

18422542 .. 18425758

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGAGAGCAGCAATTCTCCCGAGTGTTAATCAAAATTACCTACTTTGTCCTTCACGCGCCTTCTCCACGCGCCTCCACTCCTCTACTCGTAACTTATCGCCGCCGTCATTTGCCTCCATCAAGCTTCAGCATTCTTCTTCCTCTGTTTCTTCTAATGGTGGAATCTCTCTTACTCGATGCAACGCTGTTTCGTCCAATTCTTCCAGTACGTTGGTAACTGAATTAGCCGACATAGATTGGGATACCGTTGGATTTGGGCTTAAGCCAGCTGATTATATGTATGTGATGAAATGTAACATTGATGGAGAGTTCTCAAAAGGTGAGTTGCAACGTTTTGGGAATATTGAAATTAGCCCATCTGCTGGTGTACTCAACTATGGACAGGGATTGTTTGAAGGGCTAAAAGCTTACAGAAAGAAAGATGGTAATAACATCCTCCTCTTTCGTCCTGAGGAGAATGCAAAGCGTATGAGAAATGGTGCTGAGAGGATGTGTATGCCTGCTCCAACCGTTGAGCAGTTTGTAGAAGCTGTGACAGAAACTGTACTAGCAAACAAACGTTGGGTTCCACCACCAGGTAAAGGTTCCTTATATGTTAGACCATTGCTAATGGGAACAGGAGCTGTTCTTGGTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCGCCTGTTGGGAACTACTTCAAGGAAGGTGTGGCACCTATCAATTTGATTGTGGAGAATGAATTTCACCGTGCAACTCCTGGTGGTACCGGAGGTGTTAAAACCATAGGCAATTATGCTGCAGTACTGAAGGCACAGTCAATTGCGAAAGCTAAAGGATATTCCGATGTTTTGTACCTTGATTGCATTTACAAAAGATATCTTGAGGAGGTCTCGTCTTGCAATATTTTCATCGTGAAGGACAATGTGATATCTACTCCTGAAATAAAAGGAACCATTTTACCCGGTATTACTCGAAAAAGTATGATAGACGTGGCTCGAACACAAGGGTTTCAGGTGGAGGAACGGAATGTGACAGTGGATGAATTGTTAGAAGCAGACGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCTGTTGGAAGCGTCACTTACAAAGGCAAAAGAGTGTCTTACGGAGAAGGTACCTTCGGAACTGTGTCGAAGCAACTCTACACCGTTCTGACAAGCTTGCAGATGGGTCTGATTGAAGACAACATGAAATGGACTGTGAATCTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

413

Amino Acids

44.97

Weight (kDa)

8.33

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	128 - 366	2.4e-38	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	761, 1142
AccB1I	GGYRCC	3 cut(s)	709, 761, 1142
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccII	CGCG	2 cut(s)	60, 73
AciI	CCGC	2 cut(s)	104, 1077
AclI	AACGTT	2 cut(s)	334, 562
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	2 cut(s)	113, 824
AfaI	GTAC	7 cut(s)	211, 372, 549, 763, 801, 851, 1144
AfiI	CCNNNNNNNGG	3 cut(s)	365, 578, 584
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	4 cut(s)	350, 398, 697, 1208
AjiI	CACGTC	1 cut(s)	988
AjnI	CCWGG	2 cut(s)	577, 754
AluBI	AGCT	7 cut(s)	127, 272, 410, 533, 626, 827, 1188
AluI	AGCT	7 cut(s)	127, 272, 410, 533, 626, 827, 1188
Alw26I	GTCTC	2 cut(s)	892, 1093
AlwNI	CAGNNNCTG	2 cut(s)	545, 626
Ama87I	CYCGRG	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	11, 794
ApoI	RAATTY	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	692
Asp718I	GGTACC	2 cut(s)	761, 1142
AspLEI	GCGC	3 cut(s)	62, 75, 643
AsuC2I	CCSGG	1 cut(s)	960
AsuHPI	GGTGA	2 cut(s)	335, 734
AvaI	CYCGRG	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	453
BanI	GGYRCC	3 cut(s)	709, 761, 1142
BarI	GAAGNNNNNNTAC	2 cut(s)	1154, 1186
BbsI	GAAGAC	1 cut(s)	1215
BbvI	GCAGC	2 cut(s)	23, 781
BccI	CCATC	5 cut(s)	128, 299, 367, 419, 1189
BceAI	ACGGC	2 cut(s)	91, 1064
BciT130I	CCWGG	2 cut(s)	579, 756
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	960
BcoDI	GTCTC	2 cut(s)	892, 1093
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	795
BfrI	CTTAAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	12, 104, 795
BlsI	GCNGC	3 cut(s)	13, 105, 796
BmcAI	AGTACT	1 cut(s)	801
Bme1390I	CCNGG	3 cut(s)	579, 756, 960
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	988
BmiI	GGNNCC	7 cut(s)	570, 589, 711, 763, 949, 1075, 1144
BmrFI	CCNGG	3 cut(s)	579, 756, 960
BmsI	GCATC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	1215
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	1 cut(s)	960
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	1 cut(s)	1080
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	875, 905
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 578, 584
Bse1I	ACTGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	579, 756
BseDI	CCNNGG	1 cut(s)	1080
BseGI	GGATG	3 cut(s)	435, 498, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	365, 578, 584
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	444, 477
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	4 cut(s)	73, 431, 470, 896
BseXI	GCAGC	2 cut(s)	23, 781
BsgI	GTGCAG	2 cut(s)	630, 1051
Bsh1236I	CGCG	2 cut(s)	60, 73
BshNI	GGYRCC	3 cut(s)	709, 761, 1142
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	765, 960
BslI	CCNNNNNNNGG	3 cut(s)	365, 578, 584
BsmAI	GTCTC	2 cut(s)	892, 1093
BsmI	GAATGC	2 cut(s)	133, 466
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	104, 1077
BspCNI	CTCAG	2 cut(s)	445, 478
BspFNI	CGCG	2 cut(s)	60, 73
BspLI	GGNNCC	7 cut(s)	570, 589, 711, 763, 949, 1075, 1144
BspMAI	CTGCAG	1 cut(s)	799
BspT107I	GGYRCC	3 cut(s)	709, 761, 1142
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	1080
Bst2UI	CCWGG	2 cut(s)	579, 756
Bst4CI	ACNGT	9 cut(s)	250, 514, 547, 746, 813, 1033, 1156, 1177, 1228
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	270, 504, 645, 1190
BstDEI	CTNAG	3 cut(s)	453, 486, 1235
BstDSI	CCRYGG	1 cut(s)	1080
BstF5I	GGATG	3 cut(s)	435, 498, 1042
BstFNI	CGCG	2 cut(s)	60, 73
BstHHI	GCGC	3 cut(s)	62, 75, 643
BstMAI	GTCTC	2 cut(s)	892, 1093
BstNI	CCWGG	2 cut(s)	579, 756
BstSCI	CCNGG	3 cut(s)	577, 754, 958
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	2 cut(s)	60, 73
BstV1I	GCAGC	2 cut(s)	23, 781
BstV2I	GAAGAC	1 cut(s)	1215
BstXI	CCANNNNNNTGG	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	1080
BtrI	CACGTC	1 cut(s)	988
BtsCI	GGATG	3 cut(s)	435, 498, 1042
BtsIMutI	CAGTG	1 cut(s)	1038
Cac8I	GCNNGC	4 cut(s)	270, 504, 645, 1190
CaiI	CAGNNNCTG	2 cut(s)	545, 626
CfoI	GCGC	3 cut(s)	62, 75, 643
CseI	GACGC	1 cut(s)	1093
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	7 cut(s)	210, 371, 548, 762, 800, 850, 1143
CviAII	CATG	1 cut(s)	1216
CviQI	GTAC	7 cut(s)	210, 371, 548, 762, 800, 850, 1143
DdeI	CTNAG	3 cut(s)	453, 486, 1235
Eco31I	GGTCTC	1 cut(s)	892
Eco32I	GATATC	2 cut(s)	875, 927
Eco57I	CTGAAG	2 cut(s)	113, 824
Eco81I	CCTNAGG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	577, 754
EcoRV	GATATC	2 cut(s)	875, 927
FaeI	CATG	1 cut(s)	1219
FalI	AAGNNNNNCTT	4 cut(s)	1093, 1125, 1114, 1146
FatI	CATG	1 cut(s)	1215
Fnu4HI	GCNGC	3 cut(s)	12, 104, 795
FokI	GGATG	3 cut(s)	422, 505, 1049
Fsp4HI	GCNGC	3 cut(s)	12, 104, 795
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	3 cut(s)	61, 74, 642
GluI	GCNGC	3 cut(s)	12, 104, 795
HapII	CCGG	2 cut(s)	765, 960
HgaI	GACGC	1 cut(s)	1093
HhaI	GCGC	3 cut(s)	62, 75, 643
Hin1II	CATG	1 cut(s)	1219
Hin6I	GCGC	3 cut(s)	60, 73, 641
HinP1I	GCGC	3 cut(s)	60, 73, 641
HindIII	AAGCTT	3 cut(s)	125, 408, 1186
HinfI	GANTC	2 cut(s)	165, 1231
HpaII	CCGG	2 cut(s)	765, 960
HphI	GGTGA	2 cut(s)	335, 734
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	4 cut(s)	841, 1151, 1182, 1203
Hpy188III	TCNNGA	5 cut(s)	22, 452, 878, 910, 935
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	8 cut(s)	63, 73, 392, 695, 799, 907, 1133, 1156
HpyCH4III	ACNGT	9 cut(s)	250, 514, 547, 746, 813, 1033, 1156, 1177, 1228
HpyCH4IV	ACGT	4 cut(s)	212, 334, 562, 987
HpyF3I	CTNAG	3 cut(s)	453, 486, 1235
HpySE526I	ACGT	4 cut(s)	212, 334, 562, 987
Hsp92II	CATG	1 cut(s)	1219
HspAI	GCGC	3 cut(s)	60, 73, 641
KpnI	GGTACC	2 cut(s)	765, 1146
LmnI	GCTCC	2 cut(s)	511, 623
Lsp1109I	GCAGC	2 cut(s)	23, 781
LweI	GCATC	1 cut(s)	170
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	4 cut(s)	212, 334, 562, 987
MaeIII	GTNAC	6 cut(s)	92, 217, 296, 535, 1027, 1105
MboII	GAAGA	5 cut(s)	129, 132, 144, 195, 1220
MfeI	CAATTG	1 cut(s)	816
MmeI	TCCRAC	3 cut(s)	232, 533, 1078
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	4 cut(s)	30, 264, 774, 1240
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	765, 960
MspR9I	CCNGG	3 cut(s)	579, 756, 960
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	2 cut(s)	133, 466
MvaI	CCWGG	2 cut(s)	579, 756
MvnI	CGCG	2 cut(s)	60, 73
NciI	CCSGG	1 cut(s)	960
NlaIII	CATG	1 cut(s)	1219
NlaIV	GGNNCC	7 cut(s)	570, 589, 711, 763, 949, 1075, 1144
NmuCI	GTSAC	3 cut(s)	535, 1027, 1105
PctI	GAATGC	2 cut(s)	133, 466
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	165, 1231
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	13, 105, 796
Psp1406I	AACGTT	2 cut(s)	334, 562
Psp6I	CCWGG	2 cut(s)	577, 754
PspGI	CCWGG	2 cut(s)	577, 754
PspN4I	GGNNCC	7 cut(s)	570, 589, 711, 763, 949, 1075, 1144
PstI	CTGCAG	1 cut(s)	799
PstNI	CAGNNNCTG	2 cut(s)	545, 626
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	7 cut(s)	211, 372, 549, 763, 801, 851, 1144
RsaNI	GTAC	7 cut(s)	210, 371, 548, 762, 800, 850, 1143
SaqAI	TTAA	4 cut(s)	30, 264, 774, 1240
SatI	GCNGC	3 cut(s)	12, 104, 795
ScaI	AGTACT	1 cut(s)	801
ScrFI	CCNGG	3 cut(s)	579, 756, 960
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	795
SmlI	CTYRAG	2 cut(s)	263, 878
SmoI	CTYRAG	2 cut(s)	263, 878
SsiI	CCGC	2 cut(s)	104, 1077
SspI	AATATT	2 cut(s)	346, 901
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	3 cut(s)	577, 754, 958
TaaI	ACNGT	9 cut(s)	250, 514, 547, 746, 813, 1033, 1156, 1177, 1228
TaiI	ACGT	4 cut(s)	215, 337, 565, 990
TaqI	TCGA	4 cut(s)	178, 970, 994, 1160
TatI	WGTACW	3 cut(s)	370, 547, 799
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	165, 1231
Tru1I	TTAA	4 cut(s)	30, 264, 774, 1240
Tru9I	TTAA	4 cut(s)	30, 264, 774, 1240
TscAI	CASTG	1 cut(s)	1038
TseFI	GTSAC	3 cut(s)	535, 1027, 1105
TseI	GCWGC	2 cut(s)	11, 794
Tsp45I	GTSAC	3 cut(s)	535, 1027, 1105
TspDTI	ATGAA	6 cut(s)	305, 652, 750, 895, 1053, 1232
TspGWI	ACGGA	2 cut(s)	1036, 1149
TspRI	CASTG	1 cut(s)	1038
Van91I	CCANNNNNTGG	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	1 cut(s)	551
ZrmI	AGTACT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.