Rw6G042880

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004977
Physical Location & Seq
Reverse (-)
66271689 .. 66276499
4811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042880.1

Sequence Viewer

Length: 912 bp
ATGTGGTTAGTTCAAATCTTTTTACTATGGTGGAAAGTAGCTTCTTTTGTTTTTCTAATTCAGGGAGTAATTGAAGAATTGAAAGCGTACAAGAAGCTAGATCATTCTATAGTACTATTTCGTCCAGAGGAAAATGGATTGAGGATGAGAATGGGAGCGGAGCGCATGTGTATGCCTGCACCAACTGTTGAGCAGTTTGTGGAAGCTGTGAAACTTACTGTATTGGCAAATAGACGTTGGGTTCCGCCACCAAATAAAGGCTTTCTACATATCAAACCACTACTTATGGGGAATGGACCTGTTCTTAGTCTTACACCGGCTCCAGAATTCACCTTTCTCATATATGCTTCTTCGATGGGGAACACCTTTAAGGGGGGACTGGAACCAATCAACTTAGTAGTTGAAAATGAAATCCATCGTGCAGTTCGTGGTGGAGCTGGAACTGTTAATGCCATAGGGAATTATGCTATGGTTTTGAAGACACAGGTGGAGGCAAAAGCAGATGGTTTCTCTGATGTTTTGTACCTTGATTCTGTTCACAAAAGATATGTGGAACAGACTTCCACTGCTAACATCTTTCTAGTGAAGGACAAAATTATCTCCACTCCAGCACTGGAAGAGACAATTTTGCCCGGCGTTACACGCAAAAGTATAATTGAAATTGCTTGCAGCCAAGGGTACCAGGTTGAGGAGCGCCCTGTATCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCTGTTTATCACCTATAGGCAGCATAACTTACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTGAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

303

Amino Acids

33.68

Weight (kDa)

5.92

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 25 - 260 7.6e-27 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 158
AciI CCGC 2 cut(s) 158, 245
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 5 cut(s) 89, 114, 524, 680, 742
AfiI CCNNNNNNNGG 3 cut(s) 257, 372, 688
AgsI TTSAA 7 cut(s) 14, 74, 82, 404, 478, 659, 858
AjnI CCWGG 2 cut(s) 681, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 5 cut(s) 41, 97, 206, 437, 725
AluI AGCT 5 cut(s) 41, 97, 206, 437, 725
Alw26I GTCTC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 669, 774
ApoI RAATTY 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 165, 696
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 2 cut(s) 322, 756
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 681, 786
BccI CCATC 4 cut(s) 349, 423, 497, 862
BciT130I CCWGG 2 cut(s) 683, 788
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 98, 581, 719
BfmI CTRYAG 2 cut(s) 108, 768
BfoI RGCGCY 1 cut(s) 697
BisI GCNGC 2 cut(s) 670, 775
BlsI GCNGC 2 cut(s) 671, 776
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 3 cut(s) 633, 683, 788
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 4 cut(s) 243, 321, 384, 680
BmrFI CCNGG 3 cut(s) 633, 683, 788
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 2 cut(s) 306, 591
BpuMI CCSGG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 704
BsaJI CCNNGG 2 cut(s) 673, 787
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 372, 688
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 4 cut(s) 384, 618, 748, 820
BseBI CCWGG 2 cut(s) 683, 788
BseCI ATCGAT 1 cut(s) 704
BseDI CCNNGG 2 cut(s) 673, 787
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 257, 372, 688
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 4 cut(s) 384, 618, 748, 820
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 2 cut(s) 681, 786
BsgI GTGCAG 2 cut(s) 162, 441
BshNI GGYRCC 1 cut(s) 678
BshVI ATCGAT 1 cut(s) 704
BsiSI CCGG 2 cut(s) 317, 633
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 257, 372, 688
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 158, 245
BspCNI CTCAG 1 cut(s) 826
BspDI ATCGAT 1 cut(s) 704
BspLI GGNNCC 4 cut(s) 243, 321, 384, 680
BspT107I GGYRCC 1 cut(s) 678
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 4 cut(s) 384, 618, 748, 820
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 673, 787
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 673
Bst2UI CCWGG 2 cut(s) 683, 788
Bst4CI ACNGT 4 cut(s) 187, 220, 445, 843
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 177, 667
BstDEI CTNAG 3 cut(s) 305, 394, 834
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 2 cut(s) 165, 696
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 642
BstNI CCWGG 2 cut(s) 683, 788
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 631, 681, 786
BstSFI CTRYAG 2 cut(s) 108, 768
BstV1I GCAGC 2 cut(s) 681, 786
BstV2I GAAGAC 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 815
Bsu15I ATCGAT 1 cut(s) 704
BsuTUI ATCGAT 1 cut(s) 704
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 564, 611
Cac8I GCNNGC 2 cut(s) 177, 667
CfoI GCGC 2 cut(s) 165, 696
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 704
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 5 cut(s) 88, 113, 523, 679, 741
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 41, 97, 206, 261, 320, 437, 672, 725, 851
CviKI_1 RGCY 9 cut(s) 41, 97, 206, 261, 320, 437, 672, 725, 851
CviQI GTAC 5 cut(s) 88, 113, 523, 679, 741
DdeI CTNAG 3 cut(s) 305, 394, 834
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 681, 786
EcoT14I CCWWGG 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 1 cut(s) 169
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FaqI GGGAC 1 cut(s) 390
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 670, 775
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 670, 775
FspBI CTAG 3 cut(s) 98, 581, 719
GlaI GCGC 2 cut(s) 164, 695
GluI GCNGC 2 cut(s) 670, 775
GsuI CTGGAG 2 cut(s) 306, 591
HaeII RGCGCY 1 cut(s) 697
HapII CCGG 2 cut(s) 317, 633
HhaI GCGC 2 cut(s) 165, 696
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 2 cut(s) 163, 694
HinP1I GCGC 2 cut(s) 163, 694
HinfI GANTC 1 cut(s) 530
HpaII CCGG 2 cut(s) 317, 633
HphI GGTGA 2 cut(s) 322, 756
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 2 cut(s) 514, 835
Hpy188III TCNNGA 2 cut(s) 125, 323
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 4 cut(s) 187, 220, 445, 843
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 179, 422, 669, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 642
HpyF3I CTNAG 3 cut(s) 305, 394, 834
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 2 cut(s) 163, 694
KpnI GGTACC 1 cut(s) 682
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 5 cut(s) 155, 160, 325, 434, 691
Lsp1109I GCAGC 2 cut(s) 681, 786
MabI ACCWGGT 1 cut(s) 681
MaeI CTAG 3 cut(s) 98, 581, 719
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 637
MalI GATC 1 cut(s) 102
MbiI CCGCTC 1 cut(s) 158
MboI GATC 1 cut(s) 100
MboII GAAGA 5 cut(s) 86, 342, 490, 629, 893
MmeI TCCRAC 1 cut(s) 875
MnlI CCTC 5 cut(s) 121, 135, 484, 682, 703
MseI TTAA 2 cut(s) 369, 447
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 2 cut(s) 317, 633
MspR9I CCNGG 3 cut(s) 633, 683, 788
MvaI CCWGG 2 cut(s) 683, 788
MwoI GCNNNNNNNGC 1 cut(s) 642
NciI CCSGG 1 cut(s) 633
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 4 cut(s) 243, 321, 384, 680
NspI RCATGY 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PfeI GAWTC 1 cut(s) 530
PkrI GCNGC 2 cut(s) 671, 776
Psp6I CCWGG 2 cut(s) 681, 786
PspGI CCWGG 2 cut(s) 681, 786
PspN4I GGNNCC 4 cut(s) 243, 321, 384, 680
PspPI GGNCC 1 cut(s) 296
RsaI GTAC 5 cut(s) 89, 114, 524, 680, 742
RsaNI GTAC 5 cut(s) 88, 113, 523, 679, 741
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 369, 447
SatI GCNGC 2 cut(s) 670, 775
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 633, 683, 788
SexAI ACCWGGT 1 cut(s) 681
SfcI CTRYAG 2 cut(s) 108, 768
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 170
SsiI CCGC 2 cut(s) 158, 245
SspMI CTAG 3 cut(s) 98, 581, 719
StyD4I CCNGG 3 cut(s) 631, 681, 786
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 4 cut(s) 187, 220, 445, 843
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 353, 704
TatI WGTACW 2 cut(s) 112, 740
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 2 cut(s) 369, 447
Tru9I TTAA 2 cut(s) 369, 447
TscAI CASTG 2 cut(s) 571, 618
TseI GCWGC 2 cut(s) 669, 774
TspDTI ATGAA 2 cut(s) 423, 744
TspRI CASTG 2 cut(s) 571, 618
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XspI CTAG 3 cut(s) 98, 581, 719
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.