RchiOBHm_Chr6g0310251

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004977
Physical Location & Seq
Reverse (-)
67634756 .. 67638046
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27900

Sequence Viewer

Length: 1185 bp
ATGGGTTCCACTTCCGCCCTCGCACTGGATTTTCCGTCCCCAATCGCAACTACTCTCCGCACCGCCAAAACTACCCTTCACTCGTCTTACAAGCTCCGTCTCTGTTTGATCAACACAAGGCACCAAGCCATTCAGTCTCATGCCTCTGGCTATAGCCAAGCGTCTGAATTGCCTGATATTAGTTGGGACAGTGTTGGCTTCGACAACCCTATGACTACCGATTATATGTTTACTGTGAAGTGTTCTGAAGATGGGAACTTTTCCGATGGTGGGTTACAGCGTTTTGGTAAAATTGAGTTGAACCCAGCTGCCTGTGTTTTGAACTATGGTCAGGGAGTAATTGAAGAATTGAAAGCGTACAAGAAGCTAGATCATTCTATAGTACTATTTCGTCCAGAGGAAAATGGATTGAGGATGAGAATGGGAGCAGAGCGCATGTGTATGCCTGCACCGACTGTTGAGCAGTTTGTGCAAGCTGTGAAACTTACTGTATTGGCAAATAGACGTTGGGTTCCGCCACCAAATAAAGGCTTTCTACATATCAAACCACTACTTATGGGGAATGGACCTGTTCTTAGTCTTACACCGGCTCCAGAATTCACCTTTCTCATATATGCTTCTTCGATGGGGAACACCTTTAAGGGGGGACTGGAACCAATCAACTTAGTGGTTGAAAATGAAATCCATCGTGCAGTTCGTGGTGGAGCTGGAACTGTTAATGCCATAGGGAATTATGCTATGGTTTTGAAGACACAGGTGGAGGCAAAAGCAGATGGTTTCTCTGATGTTTTGTACCTTGATTCTGTTCACAAAAGATATGTGGAACAGACTTCCACTGCTAACATCTTTCTAGTGAAGGACAAAATTATCTCCACTCCAGCACTGGAAGAGACAATTTTGCCTGGCGTTACACGCAAAAGTATAATTGAAATTGCTTGCAGCCAAGGGTACCAGGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCTGTTTATCACCTATAGGCAGCATAACTTACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTGACCTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

394

Amino Acids

43.21

Weight (kDa)

5.88

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 115 - 350 1.7e-26 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 948
AccB1I GGYRCC 2 cut(s) 120, 948
AciI CCGC 4 cut(s) 15, 58, 63, 515
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 5 cut(s) 359, 384, 794, 950, 1012
AfiI CCNNNNNNNGG 5 cut(s) 25, 270, 527, 642, 958
AgsI TTSAA 9 cut(s) 301, 322, 344, 352, 674, 748, 929, 1128, 1180
AjnI CCWGG 3 cut(s) 901, 951, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AluBI AGCT 6 cut(s) 94, 308, 367, 476, 707, 995
AluI AGCT 6 cut(s) 94, 308, 367, 476, 707, 995
Alw26I GTCTC 3 cut(s) 104, 141, 884
ApeKI GCWGC 3 cut(s) 308, 939, 1044
ApoI RAATTY 1 cut(s) 596
Asp718I GGTACC 1 cut(s) 948
AspLEI GCGC 2 cut(s) 435, 966
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 592, 1026
AvaII GGWCC 1 cut(s) 566
BanI GGYRCC 2 cut(s) 120, 948
BbsI GAAGAC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 295, 951, 1056
BccI CCATC 6 cut(s) 245, 260, 619, 693, 767, 1132
BciT130I CCWGG 3 cut(s) 903, 953, 1058
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 104, 141, 884
BfaI CTAG 3 cut(s) 368, 851, 989
BfmI CTRYAG 3 cut(s) 151, 378, 1038
BfoI RGCGCY 1 cut(s) 967
BisI GCNGC 3 cut(s) 309, 940, 1045
BlsI GCNGC 3 cut(s) 310, 941, 1046
BmcAI AGTACT 1 cut(s) 384
Bme1390I CCNGG 3 cut(s) 903, 953, 1058
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 6 cut(s) 7, 122, 513, 591, 654, 950
BmrFI CCNGG 3 cut(s) 903, 953, 1058
BpiI GAAGAC 1 cut(s) 755
BpmI CTGGAG 2 cut(s) 576, 861
BsaJI CCNNGG 2 cut(s) 943, 1057
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 270, 527, 642, 958
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 5 cut(s) 30, 654, 888, 1018, 1090
BseBI CCWGG 3 cut(s) 903, 953, 1058
BseDI CCNNGG 2 cut(s) 943, 1057
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 5 cut(s) 25, 270, 527, 642, 958
BseMII CTCAG 1 cut(s) 1095
BseNI ACTGG 5 cut(s) 30, 654, 888, 1018, 1090
BseRI GAGGAG 1 cut(s) 974
BseXI GCAGC 3 cut(s) 295, 951, 1056
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 2 cut(s) 432, 711
BshNI GGYRCC 2 cut(s) 120, 948
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 3 cut(s) 22, 200, 660
BslI CCNNNNNNNGG 5 cut(s) 25, 270, 527, 642, 958
BsmAI GTCTC 3 cut(s) 104, 141, 884
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 3 cut(s) 22, 200, 660
Bsp143I GATC 2 cut(s) 108, 370
BspACI CCGC 4 cut(s) 15, 58, 63, 515
BspCNI CTCAG 1 cut(s) 1096
BspLI GGNNCC 6 cut(s) 7, 122, 513, 591, 654, 950
BspT107I GGYRCC 2 cut(s) 120, 948
BsrFI RCCGGY 1 cut(s) 586
BsrI ACTGG 5 cut(s) 30, 654, 888, 1018, 1090
BssAI RCCGGY 1 cut(s) 586
BssECI CCNNGG 2 cut(s) 943, 1057
BssMI GATC 2 cut(s) 108, 370
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 3 cut(s) 903, 953, 1058
Bst4CI ACNGT 6 cut(s) 191, 235, 457, 490, 715, 1113
Bst6I CTCTTC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 447, 474, 937
BstDEI CTNAG 3 cut(s) 575, 664, 1104
BstF5I GGATG 1 cut(s) 420
BstH2I RGCGCY 1 cut(s) 967
BstHHI GCGC 2 cut(s) 435, 966
BstKTI GATC 2 cut(s) 111, 373
BstMAI GTCTC 3 cut(s) 104, 141, 884
BstMBI GATC 2 cut(s) 108, 370
BstMWI GCNNNNNNNGC 2 cut(s) 469, 912
BstNI CCWGG 3 cut(s) 903, 953, 1058
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 3 cut(s) 901, 951, 1056
BstSFI CTRYAG 3 cut(s) 151, 378, 1038
BstV1I GCAGC 3 cut(s) 295, 951, 1056
BstV2I GAAGAC 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 1085
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 4 cut(s) 23, 196, 834, 881
Cac8I GCNNGC 3 cut(s) 447, 474, 937
CfoI GCGC 2 cut(s) 435, 966
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 150
CsiI ACCWGGT 1 cut(s) 951
Csp6I GTAC 5 cut(s) 358, 383, 793, 949, 1011
CviAII CATG 2 cut(s) 140, 436
CviQI GTAC 5 cut(s) 358, 383, 793, 949, 1011
DdeI CTNAG 3 cut(s) 575, 664, 1104
DpnI GATC 2 cut(s) 110, 372
DpnII GATC 2 cut(s) 108, 370
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
EciI GGCGGA 2 cut(s) 4, 504
Eco130I CCWWGG 1 cut(s) 943
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 3 cut(s) 901, 951, 1056
EcoT14I CCWWGG 1 cut(s) 943
ErhI CCWWGG 1 cut(s) 943
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 2 cut(s) 143, 439
FalI AAGNNNNNCTT 2 cut(s) 1057, 1089
FaqI GGGAC 3 cut(s) 22, 200, 660
FatI CATG 2 cut(s) 139, 435
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 309, 940, 1045
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 3 cut(s) 309, 940, 1045
FspBI CTAG 3 cut(s) 368, 851, 989
GlaI GCGC 2 cut(s) 434, 965
GluI GCNGC 3 cut(s) 309, 940, 1045
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 2 cut(s) 576, 861
HaeII RGCGCY 1 cut(s) 967
HapII CCGG 1 cut(s) 587
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 435, 966
Hin1II CATG 2 cut(s) 143, 439
Hin6I GCGC 2 cut(s) 433, 964
HinP1I GCGC 2 cut(s) 433, 964
HinfI GANTC 1 cut(s) 800
HpaII CCGG 1 cut(s) 587
HphI GGTGA 2 cut(s) 592, 1026
Hpy166II GTNNAC 2 cut(s) 231, 808
Hpy188I TCNGA 5 cut(s) 166, 247, 265, 784, 1105
Hpy188III TCNNGA 2 cut(s) 395, 593
Hpy8I GTNNAC 2 cut(s) 231, 808
HpyAV CCTTC 2 cut(s) 86, 850
HpyCH4III ACNGT 6 cut(s) 191, 235, 457, 490, 715, 1113
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 449, 472, 692, 939, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 912
HpyF3I CTNAG 3 cut(s) 575, 664, 1104
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 2 cut(s) 143, 439
HspAI GCGC 2 cut(s) 433, 964
KpnI GGTACC 1 cut(s) 952
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 108, 370
LmnI GCTCC 5 cut(s) 99, 425, 595, 704, 961
Lsp1109I GCAGC 3 cut(s) 295, 951, 1056
MabI ACCWGGT 1 cut(s) 951
MaeI CTAG 3 cut(s) 368, 851, 989
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 273, 907, 1171
MalI GATC 2 cut(s) 110, 372
MboI GATC 2 cut(s) 108, 370
MboII GAAGA 6 cut(s) 260, 356, 612, 760, 899, 1163
MmeI TCCRAC 1 cut(s) 1145
MnlI CCTC 7 cut(s) 29, 154, 391, 405, 754, 952, 973
MseI TTAA 2 cut(s) 639, 717
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 903, 953, 1058
MvaI CCWGG 3 cut(s) 903, 953, 1058
MwoI GCNNNNNNNGC 2 cut(s) 469, 912
NdeII GATC 2 cut(s) 108, 370
NlaIII CATG 2 cut(s) 143, 439
NlaIV GGNNCC 6 cut(s) 7, 122, 513, 591, 654, 950
NmuCI GTSAC 1 cut(s) 1171
NspI RCATGY 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 3 cut(s) 310, 941, 1046
Psp6I CCWGG 3 cut(s) 901, 951, 1056
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 3 cut(s) 901, 951, 1056
PspN4I GGNNCC 6 cut(s) 7, 122, 513, 591, 654, 950
PspPI GGNCC 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 5 cut(s) 359, 384, 794, 950, 1012
RsaNI GTAC 5 cut(s) 358, 383, 793, 949, 1011
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 2 cut(s) 639, 717
SatI GCNGC 3 cut(s) 309, 940, 1045
Sau3AI GATC 2 cut(s) 108, 370
Sau96I GGNCC 1 cut(s) 566
ScaI AGTACT 1 cut(s) 384
ScrFI CCNGG 3 cut(s) 903, 953, 1058
SexAI ACCWGGT 1 cut(s) 951
SfcI CTRYAG 3 cut(s) 151, 378, 1038
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 440
SsiI CCGC 4 cut(s) 15, 58, 63, 515
SspMI CTAG 3 cut(s) 368, 851, 989
StyD4I CCNGG 3 cut(s) 901, 951, 1056
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 6 cut(s) 191, 235, 457, 490, 715, 1113
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 201, 623, 974
TatI WGTACW 2 cut(s) 382, 1010
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 639, 717
Tru9I TTAA 2 cut(s) 639, 717
TscAI CASTG 4 cut(s) 30, 196, 841, 888
TseFI GTSAC 1 cut(s) 1171
TseI GCWGC 3 cut(s) 308, 939, 1044
Tsp45I GTSAC 1 cut(s) 1171
TspDTI ATGAA 2 cut(s) 693, 1014
TspGWI ACGGA 2 cut(s) 24, 86
TspRI CASTG 4 cut(s) 30, 196, 841, 888
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XspI CTAG 3 cut(s) 368, 851, 989
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.