Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

21202054 .. 21207772

Gene Structure 5719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG219900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGAGCAGCAGCGCCGTCCTTGCGGGTCTTCAGCCAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCTTCCTCCACTTTCCTCCGCCCCTTCTCCACCCACCATTCCTCTCATTCTCCCTCTCTCAAGCTCCAAAAGCAGCTCCCTTTGGCTTGTTACCAAGCGGTTCCTCCCTCCCCTATTCGCCGAAGTGCCACATTGTCTGATACTCTCCGCACTGAAACAAGTGAATTAGCCGACATAGAATGGGAGAATCTTGGCTTTGGGTTCGTTCCTACCGATTATATGTATGTCATGAAATGTGCTCAAGGCGGAAGCTTTTCAGATGGTGAATTGCAGCGTTTTGGGAACATTGAGTTGAACCCTTCAGCTGGAGTCCTGAATTATGGCCAGGGTTTGTTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCCGAGGAAAATGCATCGCGGATGAGGATGGGTGCTGAGCGGATGTGCATGCCCTCACCGACTGTTGATCAATTTGTGGAAGCTGTGAAGGCCACTGTGTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGCAAAGGTTCTCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCCGTTCTTGGTCTCGCGCCTGCCCCTGAATACACATTTCTGATCTATGTTTCGCCAGTTGGAAACTATTTTAAGGAAGGTGTTGCACCTATAAACTTGATTGTTGAGCATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGTGTTAAAACTATAGGGAATTATGCCGCAGTTCTGAAGGCACAGTCAGCTGCAAAAGCAAAAGGCTACTCTGATGTTCTGTACCTTGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTCATGCAACATATTTGTTGTGAAGGGTGATGTTATCTCTACCCCAGCAATAAAAGGCACAATCTTACCAGGCATTACTCGAAAGAGTATTATTGATGTTGCTCGTAACCAAGGATTCCAGGTACTTGTATTTGATTCTGTTGGGTGTGGTAGGATGGGTGGGTTGTATGAGCTTAATTGTTCTTTTGTTATTCAGCTTGCCCTTATTCTTTTTAGTTGCTTGATTTGCCAAAAGATAGTTGCATTAGCCCCTTTTTATGCAACATATAGTACCACCTTTTCTTTACAAAAGCTTAAATATGTGTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

403

Amino Acids

43.95

Weight (kDa)

8.78

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	134 - 341	2.5e-26	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	499
AccII	CGCG	2 cut(s)	478, 650
AciI	CCGC	9 cut(s)	26, 61, 91, 170, 220, 318, 478, 499, 804
AclI	AACGTT	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	3 cut(s)	17, 357, 833
AfaI	GTAC	4 cut(s)	772, 860, 1023, 1171
AfiI	CCNNNNNNNGG	3 cut(s)	377, 587, 593
AgsI	TTSAA	2 cut(s)	367, 410
AjnI	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
AluBI	AGCT	9 cut(s)	136, 148, 324, 377, 542, 827, 1072, 1096, 1192
AluI	AGCT	9 cut(s)	136, 148, 324, 377, 542, 827, 1072, 1096, 1192
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	394, 549, 611
ApeKI	GCWGC	5 cut(s)	9, 12, 145, 343, 827
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	17, 652
AsuHPI	GGTGA	3 cut(s)	347, 507, 938
AvaI	CYCGRG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	5 cut(s)	21, 24, 157, 355, 814
BccI	CCATC	4 cut(s)	326, 431, 481, 1048
BceAI	ACGGC	2 cut(s)	2, 620
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	2 cut(s)	424, 789
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	6 cut(s)	10, 13, 146, 344, 804, 828
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	6 cut(s)	11, 14, 147, 345, 805, 829
Bme1390I	CCNGG	5 cut(s)	398, 588, 765, 969, 1019
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	3 cut(s)	174, 579, 634
BmrFI	CCNGG	5 cut(s)	398, 588, 765, 969, 1019
BmsI	GCATC	2 cut(s)	482, 760
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	884, 916
BpmI	CTGGAG	3 cut(s)	399, 570, 795
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	116, 297
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	3 cut(s)	397, 462, 1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 587, 593
Bse1I	ACTGG	2 cut(s)	689, 778
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BseDI	CCNNGG	3 cut(s)	397, 462, 1009
BseGI	GGATG	4 cut(s)	486, 492, 507, 1059
BseLI	CCNNNNNNNGG	3 cut(s)	377, 587, 593
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	689, 778
BseRI	GAGGAG	1 cut(s)	905
BseXI	GCAGC	5 cut(s)	21, 24, 157, 355, 814
BseYI	CCCAGC	1 cut(s)	943
Bsh1236I	CGCG	2 cut(s)	478, 650
BshFI	GGCC	3 cut(s)	396, 551, 613
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	377, 587, 593
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	396, 551, 613
Bso31I	GGTCTC	1 cut(s)	650
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	526, 675
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	9 cut(s)	26, 61, 91, 170, 220, 318, 478, 499, 804
BspANI	GGCC	3 cut(s)	396, 551, 613
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	478, 650
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	174, 579, 634
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	650
BsrBI	CCGCTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	689, 778
BssECI	CCNNGG	3 cut(s)	397, 462, 1009
BssMI	GATC	2 cut(s)	526, 675
BssT1I	CCWWGG	1 cut(s)	1009
Bst2UI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
Bst4CI	ACNGT	4 cut(s)	523, 556, 822, 869
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstC8I	GCNNGC	3 cut(s)	509, 654, 1098
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	4 cut(s)	486, 492, 507, 1059
BstFNI	CGCG	2 cut(s)	478, 650
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 652
BstKTI	GATC	2 cut(s)	529, 678
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	526, 675
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 60, 142, 548, 748, 824, 833, 1125
BstNI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	5 cut(s)	396, 586, 763, 967, 1017
BstSFI	CTRYAG	2 cut(s)	424, 789
BstUI	CGCG	2 cut(s)	478, 650
BstV1I	GCAGC	5 cut(s)	21, 24, 157, 355, 814
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	396, 551, 613
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	486, 492, 507, 1059
BtsIMutI	CAGTG	2 cut(s)	222, 552
Cac8I	GCNNGC	3 cut(s)	509, 654, 1098
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	2 cut(s)	17, 652
Csp6I	GTAC	4 cut(s)	771, 859, 1022, 1170
CviAII	CATG	4 cut(s)	301, 508, 743, 903
CviQI	GTAC	4 cut(s)	771, 859, 1022, 1170
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	528, 677
DpnII	GATC	2 cut(s)	526, 675
EaeI	YGGCCR	1 cut(s)	394
EciI	GGCGGA	2 cut(s)	80, 333
Eco130I	CCWWGG	1 cut(s)	1009
Eco31I	GGTCTC	1 cut(s)	650
Eco57I	CTGAAG	3 cut(s)	17, 357, 833
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
EcoT14I	CCWWGG	1 cut(s)	1009
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	1009
FaeI	CATG	4 cut(s)	304, 511, 746, 906
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	300, 507, 742, 902
FauI	CCCGC	2 cut(s)	19, 68
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	6 cut(s)	10, 13, 146, 344, 804, 828
FokI	GGATG	4 cut(s)	493, 499, 514, 1066
Fsp4HI	GCNGC	6 cut(s)	10, 13, 146, 344, 804, 828
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	2 cut(s)	16, 651
GluI	GCNGC	6 cut(s)	10, 13, 146, 344, 804, 828
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	3 cut(s)	399, 570, 795
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	396, 551, 613
HhaI	GCGC	2 cut(s)	17, 652
Hin1II	CATG	4 cut(s)	304, 511, 746, 906
Hin6I	GCGC	2 cut(s)	15, 650
HinP1I	GCGC	2 cut(s)	15, 650
HindIII	AAGCTT	2 cut(s)	322, 1190
HinfI	GANTC	4 cut(s)	259, 381, 1014, 1034
HphI	GGTGA	3 cut(s)	347, 507, 938
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	5 cut(s)	211, 331, 675, 813, 850
Hpy188III	TCNNGA	4 cut(s)	301, 385, 461, 887
Hpy8I	GTNNAC	1 cut(s)	874
HpyAV	CCTTC	9 cut(s)	56, 78, 106, 381, 404, 541, 704, 808, 916
HpyCH4III	ACNGT	4 cut(s)	523, 556, 822, 869
HpyCH4IV	ACGT	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 60, 142, 548, 748, 824, 833, 1125
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	304, 511, 746, 906
HspAI	GCGC	2 cut(s)	15, 650
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	526, 675
LmnI	GCTCC	2 cut(s)	141, 153
Lsp1109I	GCAGC	5 cut(s)	21, 24, 157, 355, 814
LweI	GCATC	2 cut(s)	482, 760
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	2 cut(s)	161, 1004
MalI	GATC	2 cut(s)	528, 677
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	2 cut(s)	526, 675
MboII	GAAGA	3 cut(s)	23, 63, 66
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1075
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	673
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	4 cut(s)	705, 783, 1074, 1194
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	2 cut(s)	377, 827
MspR9I	CCNGG	5 cut(s)	398, 588, 765, 969, 1019
MvaI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
MvnI	CGCG	2 cut(s)	478, 650
MwoI	GCNNNNNNNGC	8 cut(s)	23, 60, 142, 548, 748, 824, 833, 1125
NdeII	GATC	2 cut(s)	526, 675
NlaIII	CATG	4 cut(s)	304, 511, 746, 906
NlaIV	GGNNCC	3 cut(s)	174, 579, 634
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	259, 1014, 1034
PkrI	GCNGC	6 cut(s)	11, 14, 147, 345, 805, 829
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp1406I	AACGTT	1 cut(s)	571
Psp6I	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
PspN4I	GGNNCC	3 cut(s)	174, 579, 634
PvuII	CAGCTG	2 cut(s)	377, 827
RsaI	GTAC	4 cut(s)	772, 860, 1023, 1171
RsaNI	GTAC	4 cut(s)	771, 859, 1022, 1170
SaqAI	TTAA	4 cut(s)	705, 783, 1074, 1194
SatI	GCNGC	6 cut(s)	10, 13, 146, 344, 804, 828
Sau3AI	GATC	2 cut(s)	526, 675
SchI	GAGTC	1 cut(s)	390
ScrFI	CCNGG	5 cut(s)	398, 588, 765, 969, 1019
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	482, 760
SfcI	CTRYAG	2 cut(s)	424, 789
SmlI	CTYRAG	2 cut(s)	131, 312
SmoI	CTYRAG	2 cut(s)	131, 312
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1075
SsiI	CCGC	9 cut(s)	26, 61, 91, 170, 220, 318, 478, 499, 804
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	5 cut(s)	396, 586, 763, 967, 1017
StyI	CCWWGG	1 cut(s)	1009
TaaI	ACNGT	4 cut(s)	523, 556, 822, 869
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	979
TasI	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1075
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	3 cut(s)	259, 1014, 1034
Tru1I	TTAA	4 cut(s)	705, 783, 1074, 1194
Tru9I	TTAA	4 cut(s)	705, 783, 1074, 1194
TscAI	CASTG	2 cut(s)	229, 559
TseI	GCWGC	5 cut(s)	9, 12, 145, 343, 827
TspDTI	ATGAA	3 cut(s)	317, 431, 759
TspRI	CASTG	2 cut(s)	229, 559
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.