Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Forward (+)

72034436 .. 72039697

Gene Structure 5262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGAGCAGCAGCGCCGTCCTAGCCGGTCTTCAGCCAAATTACCTTCTTTGCCCTTCCCGCAATCCTTCTTCTTCCTCCACTTTCCTCCGCCCCTTCTCCACCCACCATTCCTCTCATTCTCCCTCTCTCAAGCTCCAAAAGCAGCTCCCTTTGGCTTGTTACCAAGCCGTTCCTCCCTCCCCTATTCGCCGAAGTGCCACATTGTCTGATACTCTCCGCACTGAAACAAGTGAATTAGCCGACATAGAATGGGAGAGTCTTGGCTTTGGGTTCGTTCCTACCGATTATATGTATGTCATGAAATGTGCTCAAGGCGGAAGCTTTTCAGATGGTGAATTGCAGCGTTTTGGGAACATTGAGTTGAACCCTTCAGCTGGAGTCTTGAATTATGGCCAGGGTTTGTTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCCGAGGAAAATGCATCGCGGATGAGGTTGGGTGCTGAGCGGATGTGCATGCCCTCACCGACTGTTGATCAATTTGTGGAAGCTGTGAAGGCCACTGTGTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGCAAAGGTTCTCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCTGTTCTTGGTCTCGCGCCTGCGCCTGAATACACATTTCTGATCTATGTTTCGCCAGTTGGAAACTATTTTAAGGAAGGTGTTGCACCTATAAACTTGATTGTTGAGCATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGTGTTAAAACTATAGGGAATTATGCCGCAGTTCTGAAGGCACAGTCAGCTGCAAAAGCAAAAGGCTACTCTGATGTTCTGTACCTTGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTCATGCAACATATTTGTTGTGAAGGGTGATGTTATCTCTACCCCAGCAATAAAAGGCACAATCTTACCAGGCATTACTCGAAAGAGTATTATTGATGTTGCTCGTAACCAAGGATTCCAGGTTGAGGAGCGTGCTGTGGATGTAGATGAATTACTTGAAGCTGATGAAGTCTTTTGTACGGGAACAGCTGTGGTTGTGTCACCTGTGGGCAGCATTACTTATCAGGATAAAAGGGTGTCGTATGGAGAGAGTGGCTTTGGTGCTGTGTCACAGAAGCTCTATTCTGTGCTTACCAGATTACAGATGGGTCTTATAGAGGACAAGATGGATTGGACTGTCGAGCTAAACCCGGCAAAAGCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

421

Amino Acids

45.78

Weight (kDa)

6.62

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	134 - 372	8.9e-38	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccII	CGCG	2 cut(s)	478, 650
AciI	CCGC	7 cut(s)	61, 91, 220, 318, 478, 499, 804
AclI	AACGTT	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	3 cut(s)	17, 357, 833
AfaI	GTAC	3 cut(s)	772, 860, 1078
AfiI	CCNNNNNNNGG	4 cut(s)	377, 587, 593, 1024
AgsI	TTSAA	4 cut(s)	367, 388, 410, 1058
AjnI	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	394, 549, 611
ApeKI	GCWGC	6 cut(s)	9, 12, 145, 343, 827, 1110
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	3 cut(s)	17, 652, 658
AsuC2I	CCSGG	1 cut(s)	1250
AsuHPI	GGTGA	4 cut(s)	347, 507, 938, 1092
AvaI	CYCGRG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	6 cut(s)	21, 24, 157, 355, 814, 1122
BccI	CCATC	4 cut(s)	326, 431, 1198, 1219
BceAI	ACGGC	2 cut(s)	2, 155
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	1250
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	23, 887
BfmI	CTRYAG	2 cut(s)	424, 789
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	7 cut(s)	10, 13, 146, 344, 804, 828, 1111
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	7 cut(s)	11, 14, 147, 345, 805, 829, 1112
Bme1390I	CCNGG	6 cut(s)	398, 588, 765, 969, 1019, 1250
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	6 cut(s)	398, 588, 765, 969, 1019, 1250
BmsI	GCATC	2 cut(s)	482, 760
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	884, 916
BpmI	CTGGAG	3 cut(s)	399, 570, 795
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	116, 297
BpuMI	CCSGG	1 cut(s)	1250
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	3 cut(s)	397, 462, 1009
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 587, 593, 1024
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	689, 778
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BseDI	CCNNGG	3 cut(s)	397, 462, 1009
BseGI	GGATG	3 cut(s)	486, 507, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	377, 587, 593, 1024
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	689, 778
BseRI	GAGGAG	2 cut(s)	905, 1040
BseXI	GCAGC	6 cut(s)	21, 24, 157, 355, 814, 1122
BseYI	CCCAGC	1 cut(s)	943
Bsh1236I	CGCG	2 cut(s)	478, 650
BshFI	GGCC	3 cut(s)	396, 551, 613
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	27, 1250
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	377, 587, 593, 1024
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	396, 551, 613
Bso31I	GGTCTC	1 cut(s)	650
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	526, 675
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	7 cut(s)	61, 91, 220, 318, 478, 499, 804
BspANI	GGCC	3 cut(s)	396, 551, 613
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	478, 650
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	650
BsrBI	CCGCTC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	614
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	689, 778
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	397, 462, 1009
BssMI	GATC	2 cut(s)	526, 675
BssT1I	CCWWGG	1 cut(s)	1009
Bst2UI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
Bst4CI	ACNGT	5 cut(s)	523, 556, 822, 869, 1237
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstC8I	GCNNGC	3 cut(s)	509, 654, 1032
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	486, 507, 1045
BstFNI	CGCG	2 cut(s)	478, 650
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	3 cut(s)	17, 652, 658
BstKTI	GATC	2 cut(s)	529, 678
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	526, 675
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 60, 142, 548, 748, 824, 833
BstNI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	6 cut(s)	396, 586, 763, 967, 1017, 1248
BstSFI	CTRYAG	2 cut(s)	424, 789
BstUI	CGCG	2 cut(s)	478, 650
BstV1I	GCAGC	6 cut(s)	21, 24, 157, 355, 814, 1122
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	396, 551, 613
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	486, 507, 1045
BtsIMutI	CAGTG	2 cut(s)	222, 552
Cac8I	GCNNGC	3 cut(s)	509, 654, 1032
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	3 cut(s)	17, 652, 658
Cfr10I	RCCGGY	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	771, 859, 1077
CviAII	CATG	4 cut(s)	301, 508, 743, 903
CviQI	GTAC	3 cut(s)	771, 859, 1077
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	528, 677
DpnII	GATC	2 cut(s)	526, 675
EaeI	YGGCCR	1 cut(s)	394
EciI	GGCGGA	2 cut(s)	80, 333
Eco130I	CCWWGG	1 cut(s)	1009
Eco31I	GGTCTC	1 cut(s)	650
Eco57I	CTGAAG	3 cut(s)	17, 357, 833
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
EcoT14I	CCWWGG	1 cut(s)	1009
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	1009
FaeI	CATG	4 cut(s)	304, 511, 746, 906
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	300, 507, 742, 902
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	7 cut(s)	10, 13, 146, 344, 804, 828, 1111
FokI	GGATG	3 cut(s)	493, 514, 1052
Fsp4HI	GCNGC	7 cut(s)	10, 13, 146, 344, 804, 828, 1111
FspBI	CTAG	2 cut(s)	23, 887
GlaI	GCGC	3 cut(s)	16, 651, 657
GluI	GCNGC	7 cut(s)	10, 13, 146, 344, 804, 828, 1111
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	3 cut(s)	399, 570, 795
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	396, 551, 613
HapII	CCGG	2 cut(s)	27, 1250
HhaI	GCGC	3 cut(s)	17, 652, 658
Hin1II	CATG	4 cut(s)	304, 511, 746, 906
Hin6I	GCGC	3 cut(s)	15, 650, 656
HinP1I	GCGC	3 cut(s)	15, 650, 656
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	3 cut(s)	259, 381, 1014
HpaII	CCGG	2 cut(s)	27, 1250
HphI	GGTGA	4 cut(s)	347, 507, 938, 1092
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	5 cut(s)	211, 331, 675, 813, 850
Hpy188III	TCNNGA	5 cut(s)	301, 385, 461, 887, 1124
Hpy8I	GTNNAC	1 cut(s)	874
HpyCH4III	ACNGT	5 cut(s)	523, 556, 822, 869, 1237
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	8 cut(s)	343, 473, 507, 719, 751, 758, 830, 906
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 60, 142, 548, 748, 824, 833
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	304, 511, 746, 906
HspAI	GCGC	3 cut(s)	15, 650, 656
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	526, 675
LmnI	GCTCC	3 cut(s)	141, 153, 1027
Lsp1109I	GCAGC	6 cut(s)	21, 24, 157, 355, 814, 1122
LweI	GCATC	2 cut(s)	482, 760
MaeI	CTAG	2 cut(s)	23, 887
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	4 cut(s)	161, 1004, 1098, 1167
MalI	GATC	2 cut(s)	528, 677
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	2 cut(s)	526, 675
MboII	GAAGA	3 cut(s)	23, 63, 66
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1049
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	268, 390
MmeI	TCCRAC	1 cut(s)	673
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	705, 783
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	3 cut(s)	377, 827, 1088
MspI	CCGG	2 cut(s)	27, 1250
MspR9I	CCNGG	6 cut(s)	398, 588, 765, 969, 1019, 1250
MvaI	CCWGG	5 cut(s)	398, 588, 765, 969, 1019
MvnI	CGCG	2 cut(s)	478, 650
MwoI	GCNNNNNNNGC	7 cut(s)	23, 60, 142, 548, 748, 824, 833
NciI	CCSGG	1 cut(s)	1250
NdeII	GATC	2 cut(s)	526, 675
NlaIII	CATG	4 cut(s)	304, 511, 746, 906
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	2 cut(s)	1098, 1167
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	1014
PkrI	GCNGC	7 cut(s)	11, 14, 147, 345, 805, 829, 1112
PleI	GAGTC	2 cut(s)	267, 389
PpsI	GAGTC	2 cut(s)	267, 389
Psp1406I	AACGTT	1 cut(s)	571
Psp6I	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	5 cut(s)	396, 586, 763, 967, 1017
PspN4I	GGNNCC	1 cut(s)	579
PvuII	CAGCTG	3 cut(s)	377, 827, 1088
RsaI	GTAC	3 cut(s)	772, 860, 1078
RsaNI	GTAC	3 cut(s)	771, 859, 1077
SaqAI	TTAA	2 cut(s)	705, 783
SatI	GCNGC	7 cut(s)	10, 13, 146, 344, 804, 828, 1111
Sau3AI	GATC	2 cut(s)	526, 675
SchI	GAGTC	2 cut(s)	268, 390
ScrFI	CCNGG	6 cut(s)	398, 588, 765, 969, 1019, 1250
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	482, 760
SfcI	CTRYAG	2 cut(s)	424, 789
SmlI	CTYRAG	2 cut(s)	131, 312
SmoI	CTYRAG	2 cut(s)	131, 312
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1049
SsiI	CCGC	7 cut(s)	61, 91, 220, 318, 478, 499, 804
SspMI	CTAG	2 cut(s)	23, 887
StyD4I	CCNGG	6 cut(s)	396, 586, 763, 967, 1017, 1248
StyI	CCWWGG	1 cut(s)	1009
TaaI	ACNGT	5 cut(s)	523, 556, 822, 869, 1237
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	2 cut(s)	979, 1239
TasI	AATT	8 cut(s)	40, 236, 338, 388, 530, 746, 796, 1049
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	1 cut(s)	1014
Tru1I	TTAA	2 cut(s)	705, 783
Tru9I	TTAA	2 cut(s)	705, 783
TscAI	CASTG	2 cut(s)	229, 559
TseFI	GTSAC	2 cut(s)	1098, 1167
TseI	GCWGC	6 cut(s)	9, 12, 145, 343, 827, 1110
Tsp45I	GTSAC	2 cut(s)	1098, 1167
TspDTI	ATGAA	5 cut(s)	317, 431, 759, 1062, 1080
TspRI	CASTG	2 cut(s)	229, 559
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1201
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	2 cut(s)	23, 887
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.