Rh6CG507300

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004977
Physical Location & Seq
Reverse (-)
66835639 .. 66838719
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG507300.1

Sequence Viewer

Length: 1194 bp
ATGGGTTCCACTTCCGCCCTCGCACTGGCTTTTCCGTCCCCAATCGCAACTACTCTCCGCACCTCCAAAAACCCCCACTCCTCGTCTTACAAGCTCCTCCGTCTCTGTTTGATCACCACAAGGCTCCAAGCCATTCAGTCTCATGCCTCTGGTGGCTATAGCCAAGCGTCTGAATTGCCTGATATAAGTTGGGACAATGTTGGCTTCGACAACCCTATGACTACCGATTATATGTTTACTGTGAAGTACTGTTCTGAAGATGGGAACTTTTCCGATGGTGGGTTACAGCGTTTTGGTAAAATTGAGTTGAACCCAGCTGCCTGTGTTTTGAACTATGGTCAGGGAGTAATTGAAGAATTGAAAGCGTACAAGAAGCTAGATAATTCTATAGTACTATTTCGTCCAGAGGAAAATGGATTGAGGATGAGAATGGGAGCAGAGCGCATGTGTATGCCTGCACCAACTGTTGAGCAGTTTGTGGAAGCTGTGAAACTTACTGTATTGGCAAATAGACGTTGGGTTCCGCCACCAAATAAAGGCTTTCTACATATCAAACCACTACTTATGGGGAATGGACCTGTTCTTAGTCTTACACCGGCTCCAGAATTCACCTTTCTCATATATGCTTCTTCGATGGGGAGCACCTTTAAGGGGGGACTGGAACCAATCAACTTAGTGGTTGAAAATGAAATCCATCGTGCAGTTCGTGGTGGAGCTGGAACTGTTAATGCCATAGGGAATTATGCTATGGTTTTGAAGACACAGGTGGAGGCAAAAGCAGATGGTTTCTCTGATGTTTTGTACCTTGATTCTGTTCACAAAAGATATGTGGAACAGACTTCCACTGCTAACATCTTTCTAGTGAAGGACAAAATTATTTCCACTCCAGCACTGGAAGGGACAATTTTGCCTGGCGTTACACGCAAAAGTATAATTGAAATTGCTTGCAGCCAAGGGTACCAGGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCTGTTTATCACCTATAGGCAGCATAACTCACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTAACCTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

397

Amino Acids

43.34

Weight (kDa)

5.95

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 116 - 353 1.4e-26 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 957
AciI CCGC 3 cut(s) 15, 58, 524
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 6 cut(s) 248, 368, 393, 803, 959, 1021
AfiI CCNNNNNNNGG 5 cut(s) 25, 279, 536, 651, 967
AgsI TTSAA 9 cut(s) 310, 331, 353, 361, 683, 757, 938, 1137, 1189
AjnI CCWGG 3 cut(s) 910, 960, 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 1083, 1115
AluBI AGCT 6 cut(s) 94, 317, 376, 485, 716, 1004
AluI AGCT 6 cut(s) 94, 317, 376, 485, 716, 1004
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 2 cut(s) 107, 144
ApeKI GCWGC 3 cut(s) 317, 948, 1053
ApoI RAATTY 1 cut(s) 605
Asp718I GGTACC 1 cut(s) 957
AspLEI GCGC 2 cut(s) 444, 975
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 106, 601, 1035, 1055
AvaII GGWCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 957
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 3 cut(s) 304, 960, 1065
BccI CCATC 6 cut(s) 254, 269, 628, 702, 776, 1141
BciT130I CCWGG 3 cut(s) 912, 962, 1067
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 107, 144
BfaI CTAG 3 cut(s) 377, 860, 998
BfmI CTRYAG 3 cut(s) 157, 387, 1047
BfoI RGCGCY 1 cut(s) 976
BisI GCNGC 3 cut(s) 318, 949, 1054
BlsI GCNGC 3 cut(s) 319, 950, 1055
BmcAI AGTACT 2 cut(s) 248, 393
Bme1390I CCNGG 3 cut(s) 912, 962, 1067
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 6 cut(s) 7, 125, 522, 600, 663, 959
BmrFI CCNGG 3 cut(s) 912, 962, 1067
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 2 cut(s) 585, 870
BsaJI CCNNGG 2 cut(s) 952, 1066
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 583, 613
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 279, 536, 651, 967
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 5 cut(s) 30, 663, 897, 1027, 1099
BseBI CCWGG 3 cut(s) 912, 962, 1067
BseDI CCNNGG 2 cut(s) 952, 1066
BseGI GGATG 1 cut(s) 429
BseLI CCNNNNNNNGG 5 cut(s) 25, 279, 536, 651, 967
BseMII CTCAG 1 cut(s) 1104
BseNI ACTGG 5 cut(s) 30, 663, 897, 1027, 1099
BseRI GAGGAG 3 cut(s) 70, 86, 983
BseXI GCAGC 3 cut(s) 304, 960, 1065
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 441, 720
BshNI GGYRCC 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 644
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 4 cut(s) 22, 206, 669, 913
BslI CCNNNNNNNGG 5 cut(s) 25, 279, 536, 651, 967
BsmAI GTCTC 2 cut(s) 107, 144
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 4 cut(s) 22, 206, 669, 913
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 3 cut(s) 15, 58, 524
BspCNI CTCAG 1 cut(s) 1105
BspLI GGNNCC 6 cut(s) 7, 125, 522, 600, 663, 959
BspT107I GGYRCC 1 cut(s) 957
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 5 cut(s) 30, 663, 897, 1027, 1099
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 952, 1066
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 952
Bst2UI CCWGG 3 cut(s) 912, 962, 1067
Bst4CI ACNGT 6 cut(s) 241, 251, 466, 499, 724, 1122
BstC8I GCNNGC 2 cut(s) 456, 946
BstDEI CTNAG 3 cut(s) 584, 673, 1113
BstF5I GGATG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 976
BstHHI GCGC 2 cut(s) 444, 975
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 107, 144
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 921
BstNI CCWGG 3 cut(s) 912, 962, 1067
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 3 cut(s) 910, 960, 1065
BstSFI CTRYAG 3 cut(s) 157, 387, 1047
BstV1I GCAGC 3 cut(s) 304, 960, 1065
BstV2I GAAGAC 1 cut(s) 764
BstXI CCANNNNNNTGG 1 cut(s) 1094
BtsCI GGATG 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 3 cut(s) 23, 843, 890
Cac8I GCNNGC 2 cut(s) 456, 946
CfoI GCGC 2 cut(s) 444, 975
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 960
Csp6I GTAC 6 cut(s) 247, 367, 392, 802, 958, 1020
CviAII CATG 2 cut(s) 143, 445
CviQI GTAC 6 cut(s) 247, 367, 392, 802, 958, 1020
DdeI CTNAG 3 cut(s) 584, 673, 1113
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EciI GGCGGA 2 cut(s) 4, 513
Eco130I CCWWGG 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 910, 960, 1065
EcoT14I CCWWGG 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 146, 448
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 4 cut(s) 22, 206, 669, 913
FatI CATG 2 cut(s) 142, 444
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 318, 949, 1054
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 3 cut(s) 318, 949, 1054
FspBI CTAG 3 cut(s) 377, 860, 998
GlaI GCGC 2 cut(s) 443, 974
GluI GCNGC 3 cut(s) 318, 949, 1054
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 2 cut(s) 585, 870
HaeII RGCGCY 1 cut(s) 976
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 444, 975
Hin1II CATG 2 cut(s) 146, 448
Hin6I GCGC 2 cut(s) 442, 973
HinP1I GCGC 2 cut(s) 442, 973
HinfI GANTC 1 cut(s) 809
HpaII CCGG 1 cut(s) 596
HphI GGTGA 4 cut(s) 106, 601, 1035, 1055
Hpy166II GTNNAC 2 cut(s) 237, 817
Hpy188I TCNGA 5 cut(s) 172, 256, 274, 793, 1114
Hpy188III TCNNGA 2 cut(s) 404, 602
Hpy8I GTNNAC 2 cut(s) 237, 817
HpyAV CCTTC 2 cut(s) 859, 890
HpyCH4III ACNGT 6 cut(s) 241, 251, 466, 499, 724, 1122
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 4 cut(s) 458, 701, 948, 1157
HpyF10VI GCNNNNNNNGC 1 cut(s) 921
HpyF3I CTNAG 3 cut(s) 584, 673, 1113
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 2 cut(s) 146, 448
HspAI GCGC 2 cut(s) 442, 973
KpnI GGTACC 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 7 cut(s) 99, 129, 434, 604, 639, 713, 970
Lsp1109I GCAGC 3 cut(s) 304, 960, 1065
MabI ACCWGGT 1 cut(s) 960
MaeI CTAG 3 cut(s) 377, 860, 998
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 3 cut(s) 282, 916, 1180
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 5 cut(s) 269, 365, 621, 769, 1172
MhlI GDGCHC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 1154
MseI TTAA 2 cut(s) 648, 726
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 912, 962, 1067
MvaI CCWGG 3 cut(s) 912, 962, 1067
MwoI GCNNNNNNNGC 1 cut(s) 921
NdeII GATC 1 cut(s) 111
NlaIII CATG 2 cut(s) 146, 448
NlaIV GGNNCC 6 cut(s) 7, 125, 522, 600, 663, 959
NspI RCATGY 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 3 cut(s) 319, 950, 1055
Psp6I CCWGG 3 cut(s) 910, 960, 1065
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 3 cut(s) 910, 960, 1065
PspN4I GGNNCC 6 cut(s) 7, 125, 522, 600, 663, 959
PspPI GGNCC 1 cut(s) 575
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 6 cut(s) 248, 368, 393, 803, 959, 1021
RsaNI GTAC 6 cut(s) 247, 367, 392, 802, 958, 1020
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 648, 726
SatI GCNGC 3 cut(s) 318, 949, 1054
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 2 cut(s) 248, 393
ScrFI CCNGG 3 cut(s) 912, 962, 1067
SduI GDGCHC 1 cut(s) 644
SexAI ACCWGGT 1 cut(s) 960
SfcI CTRYAG 3 cut(s) 157, 387, 1047
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 449
SsiI CCGC 3 cut(s) 15, 58, 524
SspMI CTAG 3 cut(s) 377, 860, 998
StyD4I CCNGG 3 cut(s) 910, 960, 1065
StyI CCWWGG 1 cut(s) 952
TaaI ACNGT 6 cut(s) 241, 251, 466, 499, 724, 1122
TaiI ACGT 1 cut(s) 517
TaqI TCGA 3 cut(s) 207, 632, 983
TatI WGTACW 3 cut(s) 246, 391, 1019
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 2 cut(s) 648, 726
Tru9I TTAA 2 cut(s) 648, 726
TscAI CASTG 3 cut(s) 30, 850, 897
TseI GCWGC 3 cut(s) 317, 948, 1053
TspDTI ATGAA 2 cut(s) 702, 1023
TspGWI ACGGA 2 cut(s) 24, 89
TspRI CASTG 3 cut(s) 30, 850, 897
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XspI CTAG 3 cut(s) 377, 860, 998
ZrmI AGTACT 2 cut(s) 248, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.