RchiOBHm_Chr2g0109141

branched-chain-amino-acid aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
20546239 .. 20553439
7201 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48299

Sequence Viewer

Length: 1506 bp
ATGTCTCTCCTCCTCACAATCACCTCATTCGTGACAAATACTCATATTTTTTATCTAATTTTCTTTATTTTAAAGTTCCATCAGCACAAACTAATAACCCTCCTTCGTCTAAAAAAAAGAAGAAGAATTTTGACTCGGCCCAACTCTCTCTCTCTCTCTGGTATACGCAGCCACCAGAGCAGTGCCGTCCTTGCGTACAGGGTCTTGAGAGTTGAGTTTGGGTTTCGGATTGAGATTGAGATGGAGAGCAGCAGCGCCGTCCTTGCGGGTCTTCAACCAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCTTCCTCCACTTTCCTCCGCCCCTTCTCCACCCACCATTCCTCTCATTCTCCCTCTCTCAAGCTCCAAAAGCAGCTCCCTTTGGCTTGTTACCAAGCCGTTCCTCCCTCCCCTATTCGCCGAAGTGCCACATTGTCTGATACTCTCCGCACTGAAACAAGTGAATTAGCCGACATAGAATGGGAGAATCTTGGCTTTGGGTTCGTTCCTACCGATTATATGTATGTCATGAAATGTGCTCAAGGCGGAAGCTTTTCAGATGGTGAATTGCAGCGTTTTGGGAACATTGAGTTGAACCCTTCAGCTGGAGTCTTGAATTATGGCCAGGGTTTGTTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCCGAGGAAAATGCATCGCGGATGAGGTTGGGTGCTGAGCGGATGTGCATGCCCTCACCGACTATTGATCAATTTGTGGAAGCTGTGAAGGCCACTGTGTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGCAAAGGTTCTCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCCGTTCTTGGTCTCGCGCCTGCCCCTGAATACACATTTCTGATCTATGTTTCGCCAGTTGGAAACTATTTTAAGGAAGGTGTTGCACCTATAAACTTGATTGTTGAGCATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGTGTTAAAACTATAGGGAATTATGCCGCAGTTCTGAAGGCACAGTCAGCTGCAAAAGCGAAAGGCTACTCTGATGTTCTGTACCTTGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTCATGCAACATATTTGTTGTGAAGGGTGATGTTATCTCTACCCCATCAATAAAAGGCACAATCTTACCCGGCATTACTCGAAAGAGTATTATTGATGTTGCTCGTAACCAAGGATTCCAGGTTGAGGAGCGCGCTGTGGACGTAGATGAATTACTTGAAGCTGATGAAGTCTTTTGTACGGGAACAGCTGTGGTCGTGTCACCTGTGGGTAGCATTACTTATCAGGATAAAAGGGTGTCATATGGAGAGAGTGGCTTTGGTGCTGTGTCACAGAAGCTCTATTCTGTGCTTACCAGATTACAGATGGGCCTTATAGAGGACAAGATGGATTGGACTGTCGAGCTAAACCCAGCAAAAGCATACTGA

Protein Analysis

501

Amino Acids

55.32

Weight (kDa)

9.02

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 214 - 452 3.1e-38 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 872
AccBSI CCGCTC 1 cut(s) 739
AccI GTMKAC 1 cut(s) 163
AccII CGCG 3 cut(s) 718, 890, 1272
AciI CCGC 8 cut(s) 266, 301, 331, 460, 558, 718, 739, 1044
AclI AACGTT 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 2 cut(s) 597, 1073
AfaI GTAC 4 cut(s) 197, 1012, 1100, 1318
AfiI CCNNNNNNNGG 5 cut(s) 617, 827, 833, 1264, 1456
AgsI TTSAA 5 cut(s) 275, 607, 628, 650, 1298
AjnI CCWGG 4 cut(s) 636, 826, 1003, 1257
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 9, 890
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 5 cut(s) 137, 634, 789, 851, 1447
ApeKI GCWGC 6 cut(s) 168, 249, 252, 385, 583, 1067
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 4 cut(s) 257, 892, 1272, 1274
AspS9I GGNCC 2 cut(s) 138, 1447
AsuC2I CCSGG 1 cut(s) 1209
AsuHPI GGTGA 5 cut(s) 13, 587, 747, 1178, 1332
AvaI CYCGRG 1 cut(s) 701
BalI TGGCCA 1 cut(s) 636
BanI GGYRCC 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 6 cut(s) 180, 261, 264, 397, 595, 1054
BccI CCATC 7 cut(s) 87, 235, 566, 671, 1192, 1438, 1459
BceAI ACGGC 4 cut(s) 170, 242, 395, 860
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 4 cut(s) 638, 828, 1005, 1259
BclI TGATCA 1 cut(s) 766
BcnI CCSGG 1 cut(s) 1209
BcoDI GTCTC 2 cut(s) 9, 890
BfaI CTAG 1 cut(s) 1127
BfmI CTRYAG 2 cut(s) 664, 1029
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 7 cut(s) 169, 250, 253, 386, 584, 1044, 1068
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 7 cut(s) 170, 251, 254, 387, 585, 1045, 1069
Bme1390I CCNGG 5 cut(s) 638, 828, 1005, 1209, 1259
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 2 cut(s) 138, 1447
BmiI GGNNCC 2 cut(s) 819, 874
BmrFI CCNGG 5 cut(s) 638, 828, 1005, 1209, 1259
BmsI GCATC 2 cut(s) 722, 1000
BpiI GAAGAC 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 1124, 1156
BpmI CTGGAG 3 cut(s) 639, 810, 1035
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 3 cut(s) 226, 356, 537
BpuMI CCSGG 1 cut(s) 1209
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 637, 702, 1249
Bsc4I CCNNNNNNNGG 5 cut(s) 617, 827, 833, 1264, 1456
Bse1I ACTGG 2 cut(s) 929, 1018
Bse3DI GCAATG 1 cut(s) 854
BseBI CCWGG 4 cut(s) 638, 828, 1005, 1259
BseDI CCNNGG 3 cut(s) 637, 702, 1249
BseGI GGATG 2 cut(s) 726, 747
BseLI CCNNNNNNNGG 5 cut(s) 617, 827, 833, 1264, 1456
BseMI GCAATG 1 cut(s) 854
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 2 cut(s) 929, 1018
BsePI GCGCGC 1 cut(s) 1270
BseRI GAGGAG 2 cut(s) 1145, 1280
BseXI GCAGC 6 cut(s) 180, 261, 264, 397, 595, 1054
BseYI CCCAGC 1 cut(s) 1489
Bsh1236I CGCG 3 cut(s) 718, 890, 1272
BshFI GGCC 5 cut(s) 139, 636, 791, 853, 1449
BshNI GGYRCC 1 cut(s) 872
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 1 cut(s) 1209
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 5 cut(s) 617, 827, 833, 1264, 1456
BsmAI GTCTC 2 cut(s) 9, 890
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 5 cut(s) 139, 636, 791, 853, 1449
Bso31I GGTCTC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 766, 915
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 8 cut(s) 266, 301, 331, 460, 558, 718, 739, 1044
BspANI GGCC 5 cut(s) 139, 636, 791, 853, 1449
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 3 cut(s) 718, 890, 1272
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 819, 874
BspT107I GGYRCC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 890
BsrBI CCGCTC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 854
BsrI ACTGG 2 cut(s) 929, 1018
BssECI CCNNGG 3 cut(s) 637, 702, 1249
BssHII GCGCGC 1 cut(s) 1270
BssMI GATC 2 cut(s) 766, 915
BssNAI GTATAC 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 1249
Bst1107I GTATAC 1 cut(s) 164
Bst2UI CCWGG 4 cut(s) 638, 828, 1005, 1259
Bst4CI ACNGT 4 cut(s) 796, 1062, 1109, 1477
BstAPI GCANNNNNTGC 1 cut(s) 988
BstC8I GCNNGC 3 cut(s) 749, 894, 1272
BstDEI CTNAG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 1454
BstF5I GGATG 2 cut(s) 726, 747
BstFNI CGCG 3 cut(s) 718, 890, 1272
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 4 cut(s) 257, 892, 1272, 1274
BstKTI GATC 2 cut(s) 769, 918
BstMAI GTCTC 2 cut(s) 9, 890
BstMBI GATC 2 cut(s) 766, 915
BstMWI GCNNNNNNNGC 9 cut(s) 177, 191, 263, 300, 382, 788, 988, 1064, 1073
BstNI CCWGG 4 cut(s) 638, 828, 1005, 1259
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 5 cut(s) 636, 826, 1003, 1207, 1257
BstSFI CTRYAG 2 cut(s) 664, 1029
BstUI CGCG 3 cut(s) 718, 890, 1272
BstV1I GCAGC 6 cut(s) 180, 261, 264, 397, 595, 1054
BstV2I GAAGAC 1 cut(s) 263
BstZ17I GTATAC 1 cut(s) 164
BsuRI GGCC 5 cut(s) 139, 636, 791, 853, 1449
BtgZI GCGATG 1 cut(s) 699
BtsCI GGATG 2 cut(s) 726, 747
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 3 cut(s) 187, 462, 792
Cac8I GCNNGC 3 cut(s) 749, 894, 1272
CciI TCATGA 1 cut(s) 540
CfoI GCGC 4 cut(s) 257, 892, 1272, 1274
Cfr13I GGNCC 2 cut(s) 138, 1447
Csp6I GTAC 4 cut(s) 196, 1011, 1099, 1317
CviAII CATG 4 cut(s) 541, 748, 983, 1143
CviQI GTAC 4 cut(s) 196, 1011, 1099, 1317
DdeI CTNAG 1 cut(s) 735
DpnI GATC 2 cut(s) 768, 917
DpnII GATC 2 cut(s) 766, 915
DraI TTTAAA 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 634
EciI GGCGGA 2 cut(s) 320, 573
Eco130I CCWWGG 1 cut(s) 1249
Eco31I GGTCTC 1 cut(s) 890
Eco57I CTGAAG 2 cut(s) 597, 1073
Eco88I CYCGRG 1 cut(s) 701
EcoNI CCTNNNNNAGG 1 cut(s) 1454
EcoRII CCWGG 4 cut(s) 636, 826, 1003, 1257
EcoT14I CCWWGG 1 cut(s) 1249
EcoT22I ATGCAT 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 1249
FaeI CATG 4 cut(s) 544, 751, 986, 1146
FaqI GGGAC 1 cut(s) 684
FatI CATG 4 cut(s) 540, 747, 982, 1142
FauI CCCGC 2 cut(s) 259, 308
FauNDI CATATG 1 cut(s) 1381
FbaI TGATCA 1 cut(s) 766
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 7 cut(s) 169, 250, 253, 386, 584, 1044, 1068
FokI GGATG 2 cut(s) 733, 754
Fsp4HI GCNGC 7 cut(s) 169, 250, 253, 386, 584, 1044, 1068
FspBI CTAG 1 cut(s) 1127
GlaI GCGC 4 cut(s) 256, 891, 1271, 1273
GluI GCNGC 7 cut(s) 169, 250, 253, 386, 584, 1044, 1068
GsaI CCCAGC 1 cut(s) 1493
GsuI CTGGAG 3 cut(s) 639, 810, 1035
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 5 cut(s) 139, 636, 791, 853, 1449
HapII CCGG 1 cut(s) 1209
HhaI GCGC 4 cut(s) 257, 892, 1272, 1274
Hin1II CATG 4 cut(s) 544, 751, 986, 1146
Hin6I GCGC 4 cut(s) 255, 890, 1270, 1272
HinP1I GCGC 4 cut(s) 255, 890, 1270, 1272
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 4 cut(s) 133, 499, 621, 1254
HpaII CCGG 1 cut(s) 1209
HphI GGTGA 5 cut(s) 13, 587, 747, 1178, 1332
Hpy166II GTNNAC 3 cut(s) 164, 1114, 1279
Hpy188I TCNGA 6 cut(s) 228, 451, 571, 915, 1053, 1090
Hpy188III TCNNGA 7 cut(s) 31, 205, 541, 625, 701, 1127, 1364
Hpy8I GTNNAC 3 cut(s) 164, 1114, 1279
HpyCH4III ACNGT 4 cut(s) 796, 1062, 1109, 1477
HpyCH4IV ACGT 2 cut(s) 811, 1281
HpyCH4V TGCA 8 cut(s) 583, 713, 747, 959, 991, 998, 1070, 1146
HpyF10VI GCNNNNNNNGC 9 cut(s) 177, 191, 263, 300, 382, 788, 988, 1064, 1073
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 2 cut(s) 811, 1281
Hsp92II CATG 4 cut(s) 544, 751, 986, 1146
HspAI GCGC 4 cut(s) 255, 890, 1270, 1272
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 2 cut(s) 766, 915
LmnI GCTCC 3 cut(s) 381, 393, 1267
Lsp1109I GCAGC 6 cut(s) 180, 261, 264, 397, 595, 1054
LweI GCATC 2 cut(s) 722, 1000
MaeI CTAG 1 cut(s) 1127
MaeII ACGT 2 cut(s) 811, 1281
MaeIII GTNAC 5 cut(s) 31, 401, 1244, 1338, 1407
MalI GATC 2 cut(s) 768, 917
MbiI CCGCTC 1 cut(s) 739
MboI GATC 2 cut(s) 766, 915
MboII GAAGA 5 cut(s) 132, 135, 263, 303, 306
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 636
MluNI TGGCCA 1 cut(s) 636
MlyI GAGTC 2 cut(s) 127, 630
MmeI TCCRAC 1 cut(s) 913
Mox20I TGGCCA 1 cut(s) 636
Mph1103I ATGCAT 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 565
MscI TGGCCA 1 cut(s) 636
MseI TTAA 3 cut(s) 71, 945, 1023
Msp20I TGGCCA 1 cut(s) 636
MspA1I CMGCKG 3 cut(s) 617, 1067, 1328
MspI CCGG 1 cut(s) 1209
MspR9I CCNGG 5 cut(s) 638, 828, 1005, 1209, 1259
MvaI CCWGG 4 cut(s) 638, 828, 1005, 1259
MvnI CGCG 3 cut(s) 718, 890, 1272
MwoI GCNNNNNNNGC 9 cut(s) 177, 191, 263, 300, 382, 788, 988, 1064, 1073
NciI CCSGG 1 cut(s) 1209
NdeI CATATG 1 cut(s) 1381
NdeII GATC 2 cut(s) 766, 915
NlaIII CATG 4 cut(s) 544, 751, 986, 1146
NlaIV GGNNCC 2 cut(s) 819, 874
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 3 cut(s) 31, 1338, 1407
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 751
PaeI GCATGC 1 cut(s) 751
PagI TCATGA 1 cut(s) 540
PauI GCGCGC 1 cut(s) 1270
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 499, 1254
PkrI GCNGC 7 cut(s) 170, 251, 254, 387, 585, 1045, 1069
PleI GAGTC 2 cut(s) 127, 629
PpsI GAGTC 2 cut(s) 127, 629
Psp1406I AACGTT 1 cut(s) 811
Psp6I CCWGG 4 cut(s) 636, 826, 1003, 1257
PspFI CCCAGC 1 cut(s) 1489
PspGI CCWGG 4 cut(s) 636, 826, 1003, 1257
PspN4I GGNNCC 2 cut(s) 819, 874
PspPI GGNCC 2 cut(s) 138, 1447
PteI GCGCGC 1 cut(s) 1270
PvuII CAGCTG 3 cut(s) 617, 1067, 1328
RsaI GTAC 4 cut(s) 197, 1012, 1100, 1318
RsaNI GTAC 4 cut(s) 196, 1011, 1099, 1317
SaqAI TTAA 3 cut(s) 71, 945, 1023
SatI GCNGC 7 cut(s) 169, 250, 253, 386, 584, 1044, 1068
Sau3AI GATC 2 cut(s) 766, 915
Sau96I GGNCC 2 cut(s) 138, 1447
SchI GAGTC 2 cut(s) 127, 630
ScrFI CCNGG 5 cut(s) 638, 828, 1005, 1209, 1259
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 2 cut(s) 722, 1000
SfcI CTRYAG 2 cut(s) 664, 1029
SmlI CTYRAG 3 cut(s) 205, 371, 552
SmoI CTYRAG 3 cut(s) 205, 371, 552
SphI GCATGC 1 cut(s) 751
SsiI CCGC 8 cut(s) 266, 301, 331, 460, 558, 718, 739, 1044
SspMI CTAG 1 cut(s) 1127
StyD4I CCNGG 5 cut(s) 636, 826, 1003, 1207, 1257
StyI CCWWGG 1 cut(s) 1249
TaaI ACNGT 4 cut(s) 796, 1062, 1109, 1477
TaiI ACGT 2 cut(s) 814, 1284
TaqI TCGA 2 cut(s) 1219, 1479
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 2 cut(s) 499, 1254
Tru1I TTAA 3 cut(s) 71, 945, 1023
Tru9I TTAA 3 cut(s) 71, 945, 1023
TscAI CASTG 3 cut(s) 187, 469, 799
TseFI GTSAC 3 cut(s) 31, 1338, 1407
TseI GCWGC 6 cut(s) 168, 249, 252, 385, 583, 1067
Tsp45I GTSAC 3 cut(s) 31, 1338, 1407
TspDTI ATGAA 5 cut(s) 557, 671, 999, 1302, 1320
TspRI CASTG 3 cut(s) 187, 469, 799
XagI CCTNNNNNAGG 1 cut(s) 1454
XapI RAATTY 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 1126
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 1441
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 1 cut(s) 1127
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.