Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

17753958 .. 17759729

Gene Structure 5772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1191100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGAGCAGCGCCGTCCTTGGAGGTCTTCAGCCAAATTACCTTCTTTACCCCTCCCGCAACCCTTCTTCCTCTCTTCCCCTCCGCCCCTTCTCCTTCACCTCCCATTCCTCTCCTCTCTCCTTAAAGCTTCCTTTGACTTCTCATGGAGCCGCCGCCGCAGCCGCCGCCTCTCCCATTGGCGGATATACCACATTGTCCGATAGTGAAACAAGAGAACTAGCGGACATCGATTGGGACAACCTTGGCTTTGCGTTTCTTTCTACCGACTACATGTACGTCATGAAATGTGCTCAAGGCGGAAACTTTCCCAAAGGTGAATTACAAAGTTTTGGGAACATCGAATTGAGCCCCTCAGCCGGAGTCTTGAATTATGGGCAGGGATTGTTTGAAGGTTTGAAAGCCTACAGGAAAGAAGATGGTACTATACTCTTGTTTCGTCCTGAGGAAAATGCATTGCGGATGAGGTTGGGTGCAGAGCGGATGTGTATGCCATCACCAACTGTCAAACAGTTTGTTGAAGCTGTAAAGGCTACTGTTTTAGCAAATAGACGCTGGGTTCCCCCTCCAGGCAAAGGTTCCCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCGGAGTACACATTTCTTATTTATGTTTCACCCGTTGGAAACTATTTTAAGGAAGGTGTTGCACCCATAAATTTGATTGTTGAACATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGAGTCAAGACTATAGGGAATTATGCCGCAGTTTTGAAGGCACAGTCTGCTGCAACAGCAAAAGGCTATTCTGATGTTTTGTACCTCGACTGTGTTCACAAAAAATATTTAGAGGAGGTTTCCTTGTGCAATATTTTTGTTGTCAAGGATAATGTTATCTCTACTCCGGCAATAAAAGGGACAATCTTACCTGGCATTACTCGAAAGAGTATAATTGATGTTGCTCGTAGCGAAGGATTCCAGGTTGAGGAGCGCCAAGTGGCAGTGGATGAATTACTTGATGCTGATGAAGTCTTTTGCACCGGAACAGCTGTGGTTGTATCACCTGTTGGCAGCATAACGTATCTTGGCAAAAAGGTTTCTTATGGAGAAGGTGGTTTTGGAGTCGTGTCCGGAAAGCTCTACTCTGTGCTTACCAGATTACAAATGGGTCTTTCAGAGGACAAGATGGATTGGACTGTTGAGCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

411

Amino Acids

44.07

Weight (kDa)

5.87

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	128 - 366	6.3e-35	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	481
AccIII	TCCGGA	2 cut(s)	640, 1151
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	5 cut(s)	278, 424, 647, 754, 842
AfiI	CCNNNNNNNGG	5 cut(s)	182, 359, 569, 575, 1006
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	370, 392, 400, 521, 722, 796
AjnI	CCWGG	4 cut(s)	568, 745, 949, 999
AjuI	GAANNNNNNNTTGG	2 cut(s)	1122, 1154
AluBI	AGCT	5 cut(s)	130, 524, 1070, 1159, 1225
AluI	AGCT	5 cut(s)	130, 524, 1070, 1159, 1225
Alw21I	GWGCWC	1 cut(s)	295
Aor13HI	TCCGGA	2 cut(s)	640, 1151
AoxI	GGCC	1 cut(s)	593
ApeKI	GCWGC	4 cut(s)	9, 161, 809, 1092
ApoI	RAATTY	1 cut(s)	709
AspLEI	GCGC	2 cut(s)	14, 1014
AsuHPI	GGTGA	5 cut(s)	91, 329, 489, 660, 1074
AxyI	CCTNAGG	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	4 cut(s)	21, 173, 796, 1104
BccI	CCATC	3 cut(s)	413, 502, 1201
BciT130I	CCWGG	4 cut(s)	570, 747, 951, 1001
BfaI	CTAG	2 cut(s)	221, 1226
BfmI	CTRYAG	2 cut(s)	406, 771
BfoI	RGCGCY	2 cut(s)	15, 1015
BfuAI	ACCTGC	1 cut(s)	643
Bme1390I	CCNGG	4 cut(s)	570, 747, 951, 1001
BmiI	GGNNCC	3 cut(s)	151, 561, 580
BmrFI	CCNGG	4 cut(s)	570, 747, 951, 1001
BmsI	GCATC	2 cut(s)	742, 1030
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	552, 777
Bpu10I	CCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	19, 244
BsaWI	WCCGGW	3 cut(s)	640, 1061, 1151
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 359, 569, 575, 1006
Bse1I	ACTGG	1 cut(s)	760
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	2 cut(s)	455, 596
BseAI	TCCGGA	2 cut(s)	640, 1151
BseBI	CCWGG	4 cut(s)	570, 747, 951, 1001
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	19, 244
BseGI	GGATG	3 cut(s)	468, 489, 1033
BseLI	CCNNNNNNNGG	5 cut(s)	182, 359, 569, 575, 1006
BseMI	GCAATG	2 cut(s)	455, 596
BseMII	CTCAG	2 cut(s)	369, 435
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	4 cut(s)	105, 774, 887, 1022
BseXI	GCAGC	4 cut(s)	21, 173, 796, 1104
BseYI	CCCAGC	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	595
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	360, 641, 926, 1062, 1152
BslFI	GGGAC	2 cut(s)	251, 952
BslI	CCNNNNNNNGG	5 cut(s)	182, 359, 569, 575, 1006
BsmFI	GGGAC	2 cut(s)	251, 952
BsnI	GGCC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	295, 353
Bsp13I	TCCGGA	2 cut(s)	640, 1151
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	2 cut(s)	368, 436
BspDI	ATCGAT	1 cut(s)	231
BspEI	TCCGGA	2 cut(s)	640, 1151
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	151, 561, 580
BspMI	ACCTGC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	455, 596
BsrI	ACTGG	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	19, 244
BssT1I	CCWWGG	2 cut(s)	19, 244
Bst2UI	CCWGG	4 cut(s)	570, 747, 951, 1001
Bst4CI	ACNGT	6 cut(s)	505, 513, 538, 804, 851, 1219
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstDEI	CTNAG	2 cut(s)	355, 444
BstF5I	GGATG	3 cut(s)	468, 489, 1033
BstH2I	RGCGCY	2 cut(s)	15, 1015
BstHHI	GCGC	2 cut(s)	14, 1014
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 161, 164, 167, 530, 806, 815
BstNI	CCWGG	4 cut(s)	570, 747, 951, 1001
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	568, 745, 949, 999
BstSFI	CTRYAG	2 cut(s)	406, 771
BstV1I	GCAGC	4 cut(s)	21, 173, 796, 1104
BstV2I	GAAGAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	595
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	468, 489, 1033
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	1 cut(s)	1029
BveI	ACCTGC	1 cut(s)	643
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	2 cut(s)	14, 1014
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	5 cut(s)	277, 423, 646, 753, 841
CviAII	CATG	4 cut(s)	146, 274, 283, 725
CviQI	GTAC	5 cut(s)	277, 423, 646, 753, 841
DdeI	CTNAG	2 cut(s)	355, 444
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	3 cut(s)	74, 198, 315
Eco130I	CCWWGG	2 cut(s)	19, 244
Eco24I	GRGCYC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	444
EcoRII	CCWGG	4 cut(s)	568, 745, 949, 999
EcoT14I	CCWWGG	2 cut(s)	19, 244
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	2 cut(s)	19, 244
FaeI	CATG	4 cut(s)	149, 277, 286, 728
FaqI	GGGAC	2 cut(s)	251, 952
FatI	CATG	4 cut(s)	145, 273, 282, 724
FauI	CCCGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	475, 496, 1040
FriOI	GRGCYC	1 cut(s)	353
FspBI	CTAG	2 cut(s)	221, 1226
GlaI	GCGC	2 cut(s)	13, 1013
GsaI	CCCAGC	1 cut(s)	559
GsuI	CTGGAG	2 cut(s)	552, 777
HaeII	RGCGCY	2 cut(s)	15, 1015
HaeIII	GGCC	1 cut(s)	595
HapII	CCGG	5 cut(s)	360, 641, 926, 1062, 1152
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	2 cut(s)	14, 1014
Hin1II	CATG	4 cut(s)	149, 277, 286, 728
Hin6I	GCGC	2 cut(s)	12, 1012
HinP1I	GCGC	2 cut(s)	12, 1012
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	363, 762, 996, 1143
HpaII	CCGG	5 cut(s)	360, 641, 926, 1062, 1152
HphI	GGTGA	5 cut(s)	91, 329, 489, 660, 1074
Hpy166II	GTNNAC	2 cut(s)	648, 856
Hpy188I	TCNGA	3 cut(s)	202, 832, 1198
Hpy188III	TCNNGA	6 cut(s)	283, 367, 443, 641, 766, 1152
Hpy8I	GTNNAC	2 cut(s)	648, 856
HpyAV	CCTTC	9 cut(s)	53, 75, 100, 106, 386, 686, 790, 986, 1124
HpyCH4III	ACNGT	6 cut(s)	505, 513, 538, 804, 851, 1219
HpyCH4IV	ACGT	2 cut(s)	279, 1100
HpyCH4V	TGCA	9 cut(s)	455, 476, 632, 701, 733, 740, 812, 888, 1059
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 161, 164, 167, 530, 806, 815
HpyF3I	CTNAG	2 cut(s)	355, 444
HpySE526I	ACGT	2 cut(s)	279, 1100
Hsp92II	CATG	4 cut(s)	149, 277, 286, 728
HspAI	GCGC	2 cut(s)	12, 1012
Kpn2I	TCCGGA	2 cut(s)	640, 1151
LmnI	GCTCC	3 cut(s)	149, 643, 1009
Lsp1109I	GCAGC	4 cut(s)	21, 173, 796, 1104
LweI	GCATC	2 cut(s)	742, 1030
MaeI	CTAG	2 cut(s)	221, 1226
MaeII	ACGT	2 cut(s)	279, 1100
MbiI	CCGCTC	1 cut(s)	481
MboII	GAAGA	4 cut(s)	20, 60, 68, 428
MhlI	GDGCHC	2 cut(s)	295, 353
MluCI	AATT	9 cut(s)	37, 320, 344, 370, 709, 728, 778, 972, 1031
MlyI	GAGTC	3 cut(s)	372, 771, 1152
MmeI	TCCRAC	1 cut(s)	655
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	2 cut(s)	640, 1151
MseI	TTAA	2 cut(s)	125, 687
MspA1I	CMGCKG	1 cut(s)	1070
MspI	CCGG	5 cut(s)	360, 641, 926, 1062, 1152
MspR9I	CCNGG	4 cut(s)	570, 747, 951, 1001
MvaI	CCWGG	4 cut(s)	570, 747, 951, 1001
MwoI	GCNNNNNNNGC	7 cut(s)	158, 161, 164, 167, 530, 806, 815
NlaIII	CATG	4 cut(s)	149, 277, 286, 728
NlaIV	GGNNCC	3 cut(s)	151, 561, 580
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	996
PleI	GAGTC	3 cut(s)	371, 770, 1151
PpsI	GAGTC	3 cut(s)	371, 770, 1151
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	4 cut(s)	568, 745, 949, 999
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	4 cut(s)	568, 745, 949, 999
PspN4I	GGNNCC	3 cut(s)	151, 561, 580
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	5 cut(s)	278, 424, 647, 754, 842
RsaNI	GTAC	5 cut(s)	277, 423, 646, 753, 841
SaqAI	TTAA	2 cut(s)	125, 687
SchI	GAGTC	3 cut(s)	372, 771, 1152
ScrFI	CCNGG	4 cut(s)	570, 747, 951, 1001
SduI	GDGCHC	2 cut(s)	295, 353
SfaNI	GCATC	2 cut(s)	742, 1030
SfcI	CTRYAG	2 cut(s)	406, 771
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	9 cut(s)	37, 320, 344, 370, 709, 728, 778, 972, 1031
SspI	AATATT	2 cut(s)	866, 892
SspMI	CTAG	2 cut(s)	221, 1226
StyD4I	CCNGG	4 cut(s)	568, 745, 949, 999
StyI	CCWWGG	2 cut(s)	19, 244
TaaI	ACNGT	6 cut(s)	505, 513, 538, 804, 851, 1219
TaiI	ACGT	2 cut(s)	282, 1103
TaqI	TCGA	4 cut(s)	231, 342, 846, 961
TasI	AATT	9 cut(s)	37, 320, 344, 370, 709, 728, 778, 972, 1031
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	6 cut(s)	155, 158, 161, 167, 170, 788
TfiI	GAWTC	1 cut(s)	996
Tru1I	TTAA	2 cut(s)	125, 687
Tru9I	TTAA	2 cut(s)	125, 687
TscAI	CASTG	1 cut(s)	1029
TseI	GCWGC	4 cut(s)	9, 161, 809, 1092
TspDTI	ATGAA	4 cut(s)	299, 741, 1044, 1062
TspRI	CASTG	1 cut(s)	1029
XapI	RAATTY	1 cut(s)	709
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1183
XspI	CTAG	2 cut(s)	221, 1226
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.