Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

17810089 .. 17823264

Gene Structure 13176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1191300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGAGCAGCGCCGTCCTTGGAGGTCTTCAGCCAAATTACCTTCTTTACCCCTCCCGCAACCCTTCTTCCTCTCTTCCCCTCCGCCCCTTCTCCTTCACTTCCCATTCCTTTCCTCTCTCCTTAAAGCTTCAAAAGCAGCTTCCTTTGACTTCTCATGGAGCCGCCGCCGCCGCAGCCGCCGCCTCTCCCATTGGCGGATATACCACATTGTCCGATAGTGAAACAAGTGAACTAGCGGACATCGATTGGGACAACCTTGGCTTTGCGTTTCTTTCTACCGACTACATGTACGTCATGAAATGTGCTCAAGGTGGAAACTTTCCCAAAGGTGAATTACAAAGTTTTGGGAACATCGAATTGAGCCCCTCAGCCGGAGTCTTGAATTATGGGCAGGGATTGTTTGAAGGTTTGAAAGCCTACAGGAAAGAAGATGGTACTATACTCTTGTTTCGTCCTGAGGAAAATGCATTGCGGATGAGGTTGGGTGCAGAGCGGATGTGTATGCCATCACCAACTGTCAAACAGTTTGTTGAAGCTGTAAAGGCTACTGTTTTAGCAAATAGACGCTGGGTTCCCCCTCCAGGCAAAGGTTCCCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCGGAGTACACATTTCTTATTTATGTTTCACCCGTTGGAAACTATTTTAAGGAAGGTGTTGCACCCATAAATTTGATTGTCGAACATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGGGTCAAGACTATAGGGAATTATGCCGCTGTTTTGAAGGCACAGTCTGCCGCAAAAGCGAAAGGCTATTCTGATGTTTTGTACCTCGACTGTGTTCACAAAAAATATCTGGAGGAGGTTTCCTCGTGCAATATTTTTGTTGTCAAGGATAATGTTATCTCTACTCCGGCAATAAAAGGGACAATCTTACCTGGCATTACTCGAAAGAGTATAATTGATGTTGCTCGTAGCGAAGGATTCCAGGTTGAGGAGCGCCAAGTGGCAGTGGATGAATTACTTGATGCCGATGAAGTCTTTTGCACCGGAACAGCTGTGGTTGTATCACCTGTTGGCAGCATAACGTATCTTGGCAAAAAGGTTTCTTATGGAGAAGGTGGTTTTGGAGTCGTGTCGGAAAAGCTCTACTCTGTGCTTACCAGATTACAAATGGGTCTTTCAGAGGACAAGATGGATTGGACTGTTGAGCTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

416

Amino Acids

44.63

Weight (kDa)

6.05

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	133 - 371	3.4e-36	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	496
AccIII	TCCGGA	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	5 cut(s)	293, 439, 662, 769, 857
AfiI	CCNNNNNNNGG	5 cut(s)	197, 374, 584, 590, 1021
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	6 cut(s)	134, 385, 407, 415, 536, 811
AjnI	CCWGG	4 cut(s)	583, 760, 964, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	1137, 1169
AluBI	AGCT	6 cut(s)	130, 142, 539, 1085, 1174, 1240
AluI	AGCT	6 cut(s)	130, 142, 539, 1085, 1174, 1240
Alw21I	GWGCWC	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	9, 139, 176, 1107
ApoI	RAATTY	1 cut(s)	724
AspLEI	GCGC	2 cut(s)	14, 1029
AsuHPI	GGTGA	4 cut(s)	344, 504, 675, 1089
AxyI	CCTNAGG	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	898
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	4 cut(s)	21, 151, 188, 1119
BccI	CCATC	3 cut(s)	428, 517, 1216
BciT130I	CCWGG	4 cut(s)	585, 762, 966, 1016
BfaI	CTAG	2 cut(s)	236, 1241
BfmI	CTRYAG	2 cut(s)	421, 786
BfoI	RGCGCY	2 cut(s)	15, 1030
BfuAI	ACCTGC	1 cut(s)	658
Bme1390I	CCNGG	4 cut(s)	585, 762, 966, 1016
BmiI	GGNNCC	3 cut(s)	163, 576, 595
BmrFI	CCNGG	4 cut(s)	585, 762, 966, 1016
BmsI	GCATC	2 cut(s)	757, 1045
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	3 cut(s)	567, 792, 905
Bpu10I	CCTNAGC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	19, 259
BsaWI	WCCGGW	2 cut(s)	655, 1076
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 374, 584, 590, 1021
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	2 cut(s)	470, 611
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	4 cut(s)	585, 762, 966, 1016
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	19, 259
BseGI	GGATG	3 cut(s)	483, 504, 1048
BseLI	CCNNNNNNNGG	5 cut(s)	197, 374, 584, 590, 1021
BseMI	GCAATG	2 cut(s)	470, 611
BseMII	CTCAG	2 cut(s)	384, 450
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	2 cut(s)	902, 1037
BseXI	GCAGC	4 cut(s)	21, 151, 188, 1119
BseYI	CCCAGC	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	375, 656, 941, 1077
BslFI	GGGAC	2 cut(s)	266, 967
BslI	CCNNNNNNNGG	5 cut(s)	197, 374, 584, 590, 1021
BsmFI	GGGAC	2 cut(s)	266, 967
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	310, 368
Bsp13I	TCCGGA	1 cut(s)	655
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	2 cut(s)	383, 451
BspDI	ATCGAT	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	163, 576, 595
BspMI	ACCTGC	1 cut(s)	658
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	470, 611
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	2 cut(s)	19, 259
BssSI	CACGAG	1 cut(s)	898
BssT1I	CCWWGG	2 cut(s)	19, 259
Bst2BI	CACGAG	1 cut(s)	898
Bst2UI	CCWGG	4 cut(s)	585, 762, 966, 1016
Bst4CI	ACNGT	6 cut(s)	520, 528, 553, 819, 866, 1234
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstDEI	CTNAG	2 cut(s)	370, 459
BstF5I	GGATG	3 cut(s)	483, 504, 1048
BstH2I	RGCGCY	2 cut(s)	15, 1030
BstHHI	GCGC	2 cut(s)	14, 1029
BstMWI	GCNNNNNNNGC	9 cut(s)	136, 170, 173, 176, 179, 182, 545, 821, 830
BstNI	CCWGG	4 cut(s)	585, 762, 966, 1016
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	4 cut(s)	583, 760, 964, 1014
BstSFI	CTRYAG	2 cut(s)	421, 786
BstV1I	GCAGC	4 cut(s)	21, 151, 188, 1119
BstV2I	GAAGAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	483, 504, 1048
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	1 cut(s)	1044
BveI	ACCTGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	2 cut(s)	14, 1029
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	5 cut(s)	292, 438, 661, 768, 856
CviAII	CATG	4 cut(s)	158, 289, 298, 740
CviQI	GTAC	5 cut(s)	292, 438, 661, 768, 856
DdeI	CTNAG	2 cut(s)	370, 459
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	2 cut(s)	74, 213
Eco130I	CCWWGG	2 cut(s)	19, 259
Eco24I	GRGCYC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	459
EcoRII	CCWGG	4 cut(s)	583, 760, 964, 1014
EcoT14I	CCWWGG	2 cut(s)	19, 259
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	2 cut(s)	19, 259
FaeI	CATG	4 cut(s)	161, 292, 301, 743
FaqI	GGGAC	2 cut(s)	266, 967
FatI	CATG	4 cut(s)	157, 288, 297, 739
FauI	CCCGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	490, 511, 1055
FriOI	GRGCYC	1 cut(s)	368
FspBI	CTAG	2 cut(s)	236, 1241
GlaI	GCGC	2 cut(s)	13, 1028
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	3 cut(s)	567, 792, 905
HaeII	RGCGCY	2 cut(s)	15, 1030
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	4 cut(s)	375, 656, 941, 1077
HgaI	GACGC	1 cut(s)	576
HhaI	GCGC	2 cut(s)	14, 1029
Hin1II	CATG	4 cut(s)	161, 292, 301, 743
Hin6I	GCGC	2 cut(s)	12, 1027
HinP1I	GCGC	2 cut(s)	12, 1027
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	378, 1011, 1158
HpaII	CCGG	4 cut(s)	375, 656, 941, 1077
HphI	GGTGA	4 cut(s)	344, 504, 675, 1089
Hpy166II	GTNNAC	3 cut(s)	233, 663, 871
Hpy188I	TCNGA	4 cut(s)	217, 847, 1168, 1213
Hpy188III	TCNNGA	6 cut(s)	298, 382, 458, 656, 781, 884
Hpy8I	GTNNAC	3 cut(s)	233, 663, 871
HpyAV	CCTTC	9 cut(s)	53, 75, 100, 106, 401, 701, 805, 1001, 1139
HpyCH4III	ACNGT	6 cut(s)	520, 528, 553, 819, 866, 1234
HpyCH4IV	ACGT	2 cut(s)	294, 1115
HpyCH4V	TGCA	8 cut(s)	470, 491, 647, 716, 748, 755, 903, 1074
HpyF10VI	GCNNNNNNNGC	9 cut(s)	136, 170, 173, 176, 179, 182, 545, 821, 830
HpyF3I	CTNAG	2 cut(s)	370, 459
HpySE526I	ACGT	2 cut(s)	294, 1115
Hsp92II	CATG	4 cut(s)	161, 292, 301, 743
HspAI	GCGC	2 cut(s)	12, 1027
Kpn2I	TCCGGA	1 cut(s)	655
LmnI	GCTCC	3 cut(s)	161, 658, 1024
Lsp1109I	GCAGC	4 cut(s)	21, 151, 188, 1119
LweI	GCATC	2 cut(s)	757, 1045
MaeI	CTAG	2 cut(s)	236, 1241
MaeII	ACGT	2 cut(s)	294, 1115
MbiI	CCGCTC	1 cut(s)	496
MboII	GAAGA	4 cut(s)	20, 60, 68, 443
MhlI	GDGCHC	2 cut(s)	310, 368
MluCI	AATT	9 cut(s)	37, 335, 359, 385, 724, 743, 793, 987, 1046
MlyI	GAGTC	2 cut(s)	387, 1167
MmeI	TCCRAC	2 cut(s)	670, 1146
Mph1103I	ATGCAT	1 cut(s)	472
MroI	TCCGGA	1 cut(s)	655
MseI	TTAA	2 cut(s)	125, 702
MspA1I	CMGCKG	2 cut(s)	803, 1085
MspI	CCGG	4 cut(s)	375, 656, 941, 1077
MspR9I	CCNGG	4 cut(s)	585, 762, 966, 1016
MvaI	CCWGG	4 cut(s)	585, 762, 966, 1016
MwoI	GCNNNNNNNGC	9 cut(s)	136, 170, 173, 176, 179, 182, 545, 821, 830
NlaIII	CATG	4 cut(s)	161, 292, 301, 743
NlaIV	GGNNCC	3 cut(s)	163, 576, 595
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	658
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	1011
PleI	GAGTC	2 cut(s)	386, 1166
PpsI	GAGTC	2 cut(s)	386, 1166
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	4 cut(s)	583, 760, 964, 1014
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	4 cut(s)	583, 760, 964, 1014
PspN4I	GGNNCC	3 cut(s)	163, 576, 595
PvuII	CAGCTG	1 cut(s)	1085
RsaI	GTAC	5 cut(s)	293, 439, 662, 769, 857
RsaNI	GTAC	5 cut(s)	292, 438, 661, 768, 856
SaqAI	TTAA	2 cut(s)	125, 702
SchI	GAGTC	2 cut(s)	387, 1167
ScrFI	CCNGG	4 cut(s)	585, 762, 966, 1016
SduI	GDGCHC	2 cut(s)	310, 368
SfaNI	GCATC	2 cut(s)	757, 1045
SfcI	CTRYAG	2 cut(s)	421, 786
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	9 cut(s)	37, 335, 359, 385, 724, 743, 793, 987, 1046
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	2 cut(s)	236, 1241
StyD4I	CCNGG	4 cut(s)	583, 760, 964, 1014
StyI	CCWWGG	2 cut(s)	19, 259
TaaI	ACNGT	6 cut(s)	520, 528, 553, 819, 866, 1234
TaiI	ACGT	2 cut(s)	297, 1118
TaqI	TCGA	5 cut(s)	246, 357, 735, 861, 976
TasI	AATT	9 cut(s)	37, 335, 359, 385, 724, 743, 793, 987, 1046
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	8 cut(s)	167, 170, 173, 176, 182, 185, 803, 827
TfiI	GAWTC	1 cut(s)	1011
Tru1I	TTAA	2 cut(s)	125, 702
Tru9I	TTAA	2 cut(s)	125, 702
TscAI	CASTG	1 cut(s)	1044
TseI	GCWGC	4 cut(s)	9, 139, 176, 1107
TspDTI	ATGAA	4 cut(s)	314, 756, 1059, 1077
TspRI	CASTG	1 cut(s)	1044
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1198
XspI	CTAG	2 cut(s)	236, 1241
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.