Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

20379194 .. 20384051

Gene Structure 4858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAGAGCAGCAGCGCCGTCCTTGCGGGTTTTCAGCCAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCCTCCACTTTCCTCCGTCCCTTCTCCACCCACCATTCCTCTCATTCTCCCTTTCTCAAGCTCCAAAAGCAGCTCCCTTTGGCTTGTTACCAAGCGGTTCCTCCCTCCCCTATTCGCCGAAGTGCCACATTGTCTGATACTCTCCGCACTGAAACAAGTGAATTAGCCGACATAGAATGGGACAATCTTGGCTTTGGGTTCGTTCCTACCGATTATATGTATGTCATGAAATGTGCTCAAGGCGGATGCTTTTCAGATGGTGAATTGCAGCGTTTTGGGAACATTGAGTTGAACCCTTCAGCTGGAGTCTTGAATTATGGCCAGGGTTTGTTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCCAAGGAAAATGCATCGCGGATGAGGTTGGGTGCTGAGCGGATGTGCATGCCCTCACCAACTGTTGATCAATTTGTGGAAGCTGTGAAGGCCACTGTGTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGCAAAGGTTCTCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCCGTTCTTGGTCTCGCGCCTGCCCCTGAATACACATTTCTGATCTATGTTTCGCCAGTTGGAAACTATTTTAAGGAAGGTGTTGCACCTATAAACTTGATTGTTGAGCATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGTGTTAAAACTATAGGGAATTATGCCGCAGTTCTGAAGGCACAGTCAGCTGCAAAAGCAAAAGGCTACTCTGATGTTCTGTACCTTGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTCATGCAACATATTTGTTGTGAAGGGTGATGTTATCTCCACCCCAGCAATAAAAGGCACAATCTTACCAGGCATTACTCGAAAGAGTATTATTGATGTTGCTCGTAACCAAGGATTCCAGGTTGAGGAGCGCGCTGTGGATGTAGATGAATTACTTGAAGCTGATGAAGTCTTTTGTACGGGAACAGCTGTGGTCGTGTCACCTGTGGGCAGCATTACTTATCAGGATAAAAGGGTGTCGTATGGAGAGAGTGGCTTTGGTGCTGTGTCACAGAAGCTTTATTCTGTGCTTACCAGATTACAGATGGGTCTTATAGAGGACAAGATGGATTGGACTGTCGAGCTACACCCAGCAAAAGCGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

421

Amino Acids

45.84

Weight (kDa)

7.55

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	133 - 371	8.4e-38	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	496
AccII	CGCG	3 cut(s)	475, 647, 1029
AciI	CCGC	8 cut(s)	26, 61, 167, 217, 315, 475, 496, 801
AclI	AACGTT	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	354, 830
AfaI	GTAC	4 cut(s)	769, 857, 1075, 1259
AfiI	CCNNNNNNNGG	4 cut(s)	374, 584, 590, 1021
AgsI	TTSAA	4 cut(s)	364, 385, 407, 1055
AjnI	CCWGG	5 cut(s)	393, 583, 760, 964, 1014
AluBI	AGCT	9 cut(s)	133, 145, 374, 539, 824, 1058, 1085, 1174, 1240
AluI	AGCT	9 cut(s)	133, 145, 374, 539, 824, 1058, 1085, 1174, 1240
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	647
AoxI	GGCC	3 cut(s)	391, 546, 608
ApeKI	GCWGC	6 cut(s)	9, 12, 142, 340, 824, 1107
AspLEI	GCGC	4 cut(s)	17, 649, 1029, 1031
AsuHPI	GGTGA	4 cut(s)	344, 504, 935, 1089
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	6 cut(s)	21, 24, 154, 352, 811, 1119
BccI	CCATC	4 cut(s)	323, 428, 1195, 1216
BceAI	ACGGC	2 cut(s)	2, 617
BciT130I	CCWGG	5 cut(s)	395, 585, 762, 966, 1016
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	2 cut(s)	421, 786
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	7 cut(s)	10, 13, 143, 341, 801, 825, 1108
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	7 cut(s)	11, 14, 144, 342, 802, 826, 1109
Bme1390I	CCNGG	5 cut(s)	395, 585, 762, 966, 1016
BmiI	GGNNCC	3 cut(s)	171, 576, 631
BmrFI	CCNGG	5 cut(s)	395, 585, 762, 966, 1016
BmsI	GCATC	3 cut(s)	308, 479, 757
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	3 cut(s)	396, 567, 792
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	113, 294
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	3 cut(s)	394, 459, 1006
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 584, 590, 1021
Bse1I	ACTGG	2 cut(s)	686, 775
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	5 cut(s)	395, 585, 762, 966, 1016
BseDI	CCNNGG	3 cut(s)	394, 459, 1006
BseGI	GGATG	4 cut(s)	323, 483, 504, 1042
BseLI	CCNNNNNNNGG	4 cut(s)	374, 584, 590, 1021
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	686, 775
BsePI	GCGCGC	1 cut(s)	1027
BseRI	GAGGAG	2 cut(s)	902, 1037
BseXI	GCAGC	6 cut(s)	21, 24, 154, 352, 811, 1119
BseYI	CCCAGC	2 cut(s)	940, 1246
Bsh1236I	CGCG	3 cut(s)	475, 647, 1029
BshFI	GGCC	3 cut(s)	393, 548, 610
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	3 cut(s)	75, 266, 441
BslI	CCNNNNNNNGG	4 cut(s)	374, 584, 590, 1021
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	3 cut(s)	75, 266, 441
BsnI	GGCC	3 cut(s)	393, 548, 610
Bso31I	GGTCTC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	523, 672
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	8 cut(s)	26, 61, 167, 217, 315, 475, 496, 801
BspANI	GGCC	3 cut(s)	393, 548, 610
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	3 cut(s)	475, 647, 1029
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	171, 576, 631
BspT107I	GGYRCC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	647
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	686, 775
BssECI	CCNNGG	3 cut(s)	394, 459, 1006
BssHII	GCGCGC	1 cut(s)	1027
BssMI	GATC	2 cut(s)	523, 672
BssT1I	CCWWGG	2 cut(s)	459, 1006
Bst2UI	CCWGG	5 cut(s)	395, 585, 762, 966, 1016
Bst4CI	ACNGT	5 cut(s)	520, 553, 819, 866, 1234
BstAPI	GCANNNNNTGC	1 cut(s)	745
BstC8I	GCNNGC	3 cut(s)	506, 651, 1029
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	323, 483, 504, 1042
BstFNI	CGCG	3 cut(s)	475, 647, 1029
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	4 cut(s)	17, 649, 1029, 1031
BstKTI	GATC	2 cut(s)	526, 675
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	523, 672
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 60, 139, 545, 745, 821, 830
BstNI	CCWGG	5 cut(s)	395, 585, 762, 966, 1016
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	5 cut(s)	393, 583, 760, 964, 1014
BstSFI	CTRYAG	2 cut(s)	421, 786
BstUI	CGCG	3 cut(s)	475, 647, 1029
BstV1I	GCAGC	6 cut(s)	21, 24, 154, 352, 811, 1119
BsuRI	GGCC	3 cut(s)	393, 548, 610
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	323, 483, 504, 1042
BtsIMutI	CAGTG	2 cut(s)	219, 549
Cac8I	GCNNGC	3 cut(s)	506, 651, 1029
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	4 cut(s)	17, 649, 1029, 1031
Csp6I	GTAC	4 cut(s)	768, 856, 1074, 1258
CviAII	CATG	4 cut(s)	298, 505, 740, 900
CviQI	GTAC	4 cut(s)	768, 856, 1074, 1258
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	525, 674
DpnII	GATC	2 cut(s)	523, 672
EaeI	YGGCCR	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	459, 1006
Eco31I	GGTCTC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	354, 830
EcoRII	CCWGG	5 cut(s)	393, 583, 760, 964, 1014
EcoT14I	CCWWGG	2 cut(s)	459, 1006
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	459, 1006
FaeI	CATG	4 cut(s)	301, 508, 743, 903
FaqI	GGGAC	3 cut(s)	75, 266, 441
FatI	CATG	4 cut(s)	297, 504, 739, 899
FauI	CCCGC	2 cut(s)	19, 68
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	7 cut(s)	10, 13, 143, 341, 801, 825, 1108
FokI	GGATG	4 cut(s)	330, 490, 511, 1049
Fsp4HI	GCNGC	7 cut(s)	10, 13, 143, 341, 801, 825, 1108
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	4 cut(s)	16, 648, 1028, 1030
GluI	GCNGC	7 cut(s)	10, 13, 143, 341, 801, 825, 1108
GsaI	CCCAGC	2 cut(s)	944, 1250
GsuI	CTGGAG	3 cut(s)	396, 567, 792
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	393, 548, 610
HhaI	GCGC	4 cut(s)	17, 649, 1029, 1031
Hin1II	CATG	4 cut(s)	301, 508, 743, 903
Hin6I	GCGC	4 cut(s)	15, 647, 1027, 1029
HinP1I	GCGC	4 cut(s)	15, 647, 1027, 1029
HindIII	AAGCTT	1 cut(s)	1172
HinfI	GANTC	2 cut(s)	378, 1011
HphI	GGTGA	4 cut(s)	344, 504, 935, 1089
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	5 cut(s)	208, 328, 672, 810, 847
Hpy188III	TCNNGA	4 cut(s)	298, 382, 884, 1121
Hpy8I	GTNNAC	1 cut(s)	871
HpyAV	CCTTC	9 cut(s)	56, 78, 103, 378, 401, 538, 701, 805, 913
HpyCH4III	ACNGT	5 cut(s)	520, 553, 819, 866, 1234
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	8 cut(s)	340, 470, 504, 716, 748, 755, 827, 903
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 60, 139, 545, 745, 821, 830
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	4 cut(s)	301, 508, 743, 903
HspAI	GCGC	4 cut(s)	15, 647, 1027, 1029
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	523, 672
LmnI	GCTCC	3 cut(s)	138, 150, 1024
Lsp1109I	GCAGC	6 cut(s)	21, 24, 154, 352, 811, 1119
LweI	GCATC	3 cut(s)	308, 479, 757
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	4 cut(s)	158, 1001, 1095, 1164
MalI	GATC	2 cut(s)	525, 674
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	2 cut(s)	523, 672
MboII	GAAGA	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	8 cut(s)	40, 233, 335, 385, 527, 743, 793, 1046
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	670
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	702, 780
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	3 cut(s)	374, 824, 1085
MspR9I	CCNGG	5 cut(s)	395, 585, 762, 966, 1016
MvaI	CCWGG	5 cut(s)	395, 585, 762, 966, 1016
MvnI	CGCG	3 cut(s)	475, 647, 1029
MwoI	GCNNNNNNNGC	7 cut(s)	23, 60, 139, 545, 745, 821, 830
NdeII	GATC	2 cut(s)	523, 672
NlaIII	CATG	4 cut(s)	301, 508, 743, 903
NlaIV	GGNNCC	3 cut(s)	171, 576, 631
NmuCI	GTSAC	2 cut(s)	1095, 1164
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	508
PaeI	GCATGC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	297
PauI	GCGCGC	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	1011
PkrI	GCNGC	7 cut(s)	11, 14, 144, 342, 802, 826, 1109
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	568
Psp6I	CCWGG	5 cut(s)	393, 583, 760, 964, 1014
PspFI	CCCAGC	2 cut(s)	940, 1246
PspGI	CCWGG	5 cut(s)	393, 583, 760, 964, 1014
PspN4I	GGNNCC	3 cut(s)	171, 576, 631
PteI	GCGCGC	1 cut(s)	1027
PvuII	CAGCTG	3 cut(s)	374, 824, 1085
RsaI	GTAC	4 cut(s)	769, 857, 1075, 1259
RsaNI	GTAC	4 cut(s)	768, 856, 1074, 1258
SaqAI	TTAA	2 cut(s)	702, 780
SatI	GCNGC	7 cut(s)	10, 13, 143, 341, 801, 825, 1108
Sau3AI	GATC	2 cut(s)	523, 672
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	5 cut(s)	395, 585, 762, 966, 1016
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	3 cut(s)	308, 479, 757
SfcI	CTRYAG	2 cut(s)	421, 786
SmlI	CTYRAG	2 cut(s)	128, 309
SmoI	CTYRAG	2 cut(s)	128, 309
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	8 cut(s)	40, 233, 335, 385, 527, 743, 793, 1046
SsiI	CCGC	8 cut(s)	26, 61, 167, 217, 315, 475, 496, 801
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	5 cut(s)	393, 583, 760, 964, 1014
StyI	CCWWGG	2 cut(s)	459, 1006
TaaI	ACNGT	5 cut(s)	520, 553, 819, 866, 1234
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	976, 1236
TasI	AATT	8 cut(s)	40, 233, 335, 385, 527, 743, 793, 1046
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	1 cut(s)	1011
Tru1I	TTAA	2 cut(s)	702, 780
Tru9I	TTAA	2 cut(s)	702, 780
TscAI	CASTG	2 cut(s)	226, 556
TseFI	GTSAC	2 cut(s)	1095, 1164
TseI	GCWGC	6 cut(s)	9, 12, 142, 340, 824, 1107
Tsp45I	GTSAC	2 cut(s)	1095, 1164
TspDTI	ATGAA	5 cut(s)	314, 428, 756, 1059, 1077
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	226, 556
XbaI	TCTAGA	1 cut(s)	883
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1198
XspI	CTAG	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.