Rh3AG329900

Annexin A13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017739
Physical Location & Seq
Reverse (-)
47352496 .. 47354151
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG329900.1

Sequence Viewer

Length: 1011 bp
ATGCCGACCCTGGACTTTGAAATCGAATGCAAAGAGATACATGAATCCTGGATACGACCACCTGAGCAGCTTAATCAATTGGTTCGATCTTTGGCACGACGAAAACGGCATGAAAGGCAACAGATTCGAGAAACTTACAAGGGAATCTATGGAGAGGACTTGGTAAGCAGACTGCAGCACAAGGCAGATGGGAATGATGCTGATCAAATAACCACTGGGATTTCACCAAATTTATGTGCAGCTTTGTCACTTTGGATGATTAATCAGCATGAACGTGATGCAATTTTCATCCAGGAGGCCCTTCATAATGACCAGCAAGGTCGTCATGGTAAAAAATATAATGCTCTTGTAGAGATTTTTGCTAGTCGAAAATCGAGTCAAATCCTACTCATCAAACAAGCATATCACACAAAGTTTAGAAGGCAGTTGGACCAAGATATCATCAATATTGAGCTTCCCCATCCTCACCAAAAGATAGTGGTAGCACTGGTGGCATCACACAAGGCACACCATGCAGATGTTAACCAAGACATCGCAAAGTCTGATGCACGGAGACTTTTTGAAACAGGCCGGGAACGAAGTTCTTCAGGCATACAAGAAGCTGTCGTATTAGAATTATTTAGCAAACGCAGTATTCCACAGCTTAAGCTTACTTTTTCTTGCTATAAACACATCTATGGACATGACTATAAAAAGTCCCTGAAGTCTGTAAGCTCTGGTGAATTTGAAAATGCATTGAAAATGGTCGTACAATGCGTTCACAACCCACCTAATTATTTTGCAAAGATATTGCATGCAAGCATTAAAGGGTTGACAAGTAGTAGCACTAGTGATGATAAAGGGGCTTTGGTTCGTGTGATGGTGAGCAGAGCAGAAGTAGACATGGATGAGATTCAAAGAATGTTTAAGAAGAAGCATGGAGTTGAACTCAGAGACGCAATAATATCATCTGTAACGGGGGATAACTGCTACACAGACTTTCTTGTTGCCTTGGCTTCAAAATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

336

Amino Acids

38.33

Weight (kDa)

9.12

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 107 - 147 5.7e-07 Annexin
Annexin PF00191 196 - 247 4e-08 Annexin
Annexin PF00191 259 - 330 1.1e-08 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017739)

Species Orthologous Gene IDs
malus_domestica MD12G1007300.v1.1
prunus_persica Prupe.7G008200_v2.0.a1
pyrus_communis pycom12g00530
rosa_chinensis RchiOBHm_Chr3g0496581
rosa_laevigata RLG00000022517
rosa_roxburghii Rroxscaffold_6G00388900
rosa_rugosa Rorug03G0284700
rosa_samantha Rh3AG329900 Rh3BG365700 Rh3CG362700 Rh3DG365900
rosa_wichuraiana Rw3G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 879
AcsI RAATTY 2 cut(s) 229, 722
AcuI CTGAAG 2 cut(s) 570, 722
AfaI GTAC 1 cut(s) 750
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 7 cut(s) 20, 563, 728, 739, 896, 926, 999
AhlI ACTAGT 1 cut(s) 827
AjnI CCWGG 3 cut(s) 9, 47, 291
AluBI AGCT 7 cut(s) 70, 242, 454, 602, 643, 649, 714
AluI AGCT 7 cut(s) 70, 242, 454, 602, 643, 649, 714
Alw26I GTCTC 2 cut(s) 547, 927
AoxI GGCC 2 cut(s) 297, 568
ApeKI GCWGC 3 cut(s) 67, 175, 239
ApoI RAATTY 2 cut(s) 229, 722
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 298, 430
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 4 cut(s) 216, 458, 731, 874
AvaII GGWCC 1 cut(s) 430
BbvI GCAGC 3 cut(s) 79, 187, 251
BccI CCATC 3 cut(s) 182, 468, 853
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 3 cut(s) 11, 49, 293
BciVI GTATCC 1 cut(s) 45
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 547, 927
BcuI ACTAGT 1 cut(s) 827
BfaI CTAG 2 cut(s) 363, 828
BfmI CTRYAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 644
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 3 cut(s) 68, 176, 240
BlsI GCNGC 3 cut(s) 69, 177, 241
Bme1390I CCNGG 4 cut(s) 11, 49, 293, 572
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 298, 430
BmrFI CCNGG 4 cut(s) 11, 49, 293, 572
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 4 cut(s) 187, 268, 503, 535
BmuI ACTGGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 912, 944
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 9, 990
Bse1I ACTGG 2 cut(s) 220, 492
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 11, 49, 293
BseDI CCNNGG 2 cut(s) 9, 990
BseGI GGATG 4 cut(s) 261, 288, 460, 892
BseJI GATNNNNATC 1 cut(s) 201
BseMII CTCAG 2 cut(s) 54, 943
BseNI ACTGG 2 cut(s) 220, 492
BseXI GCAGC 3 cut(s) 79, 187, 251
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 299, 570
BsiSI CCGG 1 cut(s) 571
BslFI GGGAC 1 cut(s) 682
BsmAI GTCTC 2 cut(s) 547, 927
BsmBI CGTCTC 1 cut(s) 927
BsmFI GGGAC 1 cut(s) 682
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 2 cut(s) 299, 570
Bsp143I GATC 2 cut(s) 86, 202
BspANI GGCC 2 cut(s) 299, 570
BspCNI CTCAG 2 cut(s) 55, 942
BspMAI CTGCAG 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 644
BsrI ACTGG 2 cut(s) 220, 492
BssECI CCNNGG 2 cut(s) 9, 990
BssMI GATC 2 cut(s) 86, 202
BssT1I CCWWGG 1 cut(s) 990
Bst2UI CCWGG 3 cut(s) 11, 49, 293
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 795, 799
BstDEI CTNAG 2 cut(s) 63, 929
BstF5I GGATG 4 cut(s) 261, 288, 460, 892
BstKTI GATC 2 cut(s) 89, 205
BstMAI GTCTC 2 cut(s) 547, 927
BstMBI GATC 2 cut(s) 86, 202
BstMWI GCNNNNNNNGC 3 cut(s) 115, 491, 512
BstNI CCWGG 3 cut(s) 11, 49, 293
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 4 cut(s) 9, 47, 291, 570
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 79, 187, 251
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 299, 570
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 4 cut(s) 261, 288, 460, 892
BtsIMutI CAGTG 2 cut(s) 213, 485
Cac8I GCNNGC 2 cut(s) 795, 799
Cfr13I GGNCC 2 cut(s) 298, 430
CseI GACGC 1 cut(s) 944
Csp6I GTAC 1 cut(s) 749
CviAII CATG 9 cut(s) 41, 110, 269, 326, 512, 683, 794, 883, 917
CviQI GTAC 1 cut(s) 749
DdeI CTNAG 2 cut(s) 63, 929
DpnI GATC 2 cut(s) 88, 204
DpnII GATC 2 cut(s) 86, 202
Eco130I CCWWGG 1 cut(s) 990
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 570, 722
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 3 cut(s) 9, 47, 291
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 990
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 990
Esp3I CGTCTC 1 cut(s) 927
FaeI CATG 9 cut(s) 44, 113, 272, 329, 515, 686, 797, 886, 920
FaqI GGGAC 1 cut(s) 682
FatI CATG 9 cut(s) 40, 109, 268, 325, 511, 682, 793, 882, 916
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 68, 176, 240
FokI GGATG 4 cut(s) 268, 275, 447, 899
Fsp4HI GCNGC 3 cut(s) 68, 176, 240
FspBI CTAG 2 cut(s) 363, 828
GluI GCNGC 3 cut(s) 68, 176, 240
HaeIII GGCC 2 cut(s) 299, 570
HapII CCGG 1 cut(s) 571
HgaI GACGC 1 cut(s) 944
Hin1II CATG 9 cut(s) 44, 113, 272, 329, 515, 686, 797, 886, 920
HincII GTYRAC 2 cut(s) 523, 813
HindII GTYRAC 2 cut(s) 523, 813
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 5 cut(s) 44, 124, 144, 376, 892
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 1 cut(s) 571
HphI GGTGA 4 cut(s) 216, 458, 731, 874
Hpy166II GTNNAC 4 cut(s) 523, 760, 813, 880
Hpy188I TCNGA 2 cut(s) 544, 932
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 4 cut(s) 523, 760, 813, 880
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 311, 414
HpyCH4IV ACGT 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 491, 512
HpyF3I CTNAG 2 cut(s) 63, 929
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 9 cut(s) 44, 113, 272, 329, 515, 686, 797, 886, 920
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 2 cut(s) 86, 202
Lsp1109I GCAGC 3 cut(s) 79, 187, 251
LweI GCATC 4 cut(s) 187, 268, 503, 535
MaeI CTAG 2 cut(s) 363, 828
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 246, 952
MalI GATC 2 cut(s) 88, 204
MboI GATC 2 cut(s) 86, 202
MboII GAAGA 2 cut(s) 576, 922
MfeI CAATTG 1 cut(s) 77
MluCI AATT 6 cut(s) 77, 229, 282, 614, 722, 772
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 3 cut(s) 148, 289, 474
Mph1103I ATGCAT 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 6 cut(s) 72, 261, 522, 645, 804, 906
MslI CAYNNNNRTG 3 cut(s) 273, 516, 675
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 4 cut(s) 11, 49, 293, 572
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 3 cut(s) 11, 49, 293
MwoI GCNNNNNNNGC 3 cut(s) 115, 491, 512
NciI CCSGG 1 cut(s) 572
NdeII GATC 2 cut(s) 86, 202
NlaIII CATG 9 cut(s) 44, 113, 272, 329, 515, 686, 797, 886, 920
NmuCI GTSAC 1 cut(s) 246
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 797
PaeI GCATGC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 583
PfeI GAWTC 4 cut(s) 44, 124, 144, 892
PfoI TCCNGGA 2 cut(s) 47, 291
PkrI GCNGC 3 cut(s) 69, 177, 241
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 9, 47, 291
PspGI CCWGG 3 cut(s) 9, 47, 291
PspPI GGNCC 2 cut(s) 298, 430
PsrI GAACNNNNNNTAC 2 cut(s) 741, 773
PstI CTGCAG 1 cut(s) 177
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
RseI CAYNNNNRTG 3 cut(s) 273, 516, 675
SaqAI TTAA 6 cut(s) 72, 261, 522, 645, 804, 906
SatI GCNGC 3 cut(s) 68, 176, 240
Sau3AI GATC 2 cut(s) 86, 202
Sau96I GGNCC 2 cut(s) 298, 430
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 4 cut(s) 11, 49, 293, 572
SfaNI GCATC 4 cut(s) 187, 268, 503, 535
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 273, 516, 675
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SpeI ACTAGT 1 cut(s) 827
SphI GCATGC 1 cut(s) 797
Sse9I AATT 6 cut(s) 77, 229, 282, 614, 722, 772
SspI AATATT 1 cut(s) 448
SspMI CTAG 2 cut(s) 363, 828
StyD4I CCNGG 4 cut(s) 9, 47, 291, 570
StyI CCWWGG 1 cut(s) 990
TaiI ACGT 1 cut(s) 277
TaqI TCGA 5 cut(s) 24, 85, 127, 367, 374
TasI AATT 6 cut(s) 77, 229, 282, 614, 722, 772
TfiI GAWTC 4 cut(s) 44, 124, 144, 892
Tru1I TTAA 6 cut(s) 72, 261, 522, 645, 804, 906
Tru9I TTAA 6 cut(s) 72, 261, 522, 645, 804, 906
TscAI CASTG 2 cut(s) 220, 492
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 3 cut(s) 67, 175, 239
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 5 cut(s) 57, 126, 277, 285, 293
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 2 cut(s) 220, 492
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 430
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 229, 722
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 879
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 2 cut(s) 363, 828
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.