Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017739

Physical Location & Seq

Genomic Coordinates Reverse (-)

45813272 .. 45814533

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCGACCCTGGACTTTGAAATCGAATGCAAAGAGATACATGATTCCTGGATACGACCACCTGAGCAGCTTAATCAATTGGTTCGATCTTTAGCACGACGAAAACGGCATGAAAGGCAACAGATTCGAGAAACTTACAAGGCAATCTATGGAGAGGACTTGGTAAGCAGACTGCAGCACAAGGCAGATGGGAATGATGCTGATCAAATAACCACTGGGATTTCACCAAATTTATGTGCAGCTTTGTCACTTTGGATGATTAATCAGCATGAACGTGATGCAATTTTCATCCAGGAGGCCCTTCATAATGACCAGCAAGGTCGTCATGGTAAAAACTATAATGCTCTTGTAGAGATTTTTGCTAGTCGAAAATCGAGTCAAATCCTTCTCATCAAACAAGCATATCACACAAAGTTTAGAAGGCAGTTGGACCAAGATATCATCAATATTGAGCTTCCCCATCCTCACCAAAAGATAGTGGTAGCACTGGTGGCATCACACAAGGCACACCATGCAGATGTTAACCAAGACATCGCAAAGTCTGATGCACGGAGGCTTTTTGAAACAGGCCGGGTACGAAGCTCTTCAGGCATACAAGAAGCTGTCGTATTAGAATTATTTAGCAAACGCAGTATTCCACAGCTTAAGCTTACTTTTTCTTGCTATAAACACATCTATGGACATGACTATAAAAAGTACCTGAAGTCTGTAAGCTCTGGTGAATTTGAAAATGCATTGAAAATGGTCGTACAATGCATTCACAACCCACCTAATTATTTTGCAAAGATATTGCATGCAAGCATTACAGGGTTGACAAGTAGTAGCACTAGTGATGATAAAGGGGCTTTGGTTCGTGTGATGGTGAGCAGAGCAGAAGTAGACATGGATGAGATTCAAAGAATGTTTAAGAAGAAGCACGGAGTTGAACTCAGAGACGCAATAATATCATCTGTAACGGGGGACAACTGCTACACAGACTTTCTTGTTGCCTTGGCTTCAAAATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

336

Amino Acids

38.35

Weight (kDa)

9.03

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	107 - 147	2.8e-07	Annexin
Annexin	PF00191	196 - 247	1.4e-07	Annexin
Annexin	PF00191	259 - 330	5.5e-08	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017739)

Species	Orthologous Gene IDs
malus_domestica	MD12G1007300.v1.1
prunus_persica	Prupe.7G008200_v2.0.a1
pyrus_communis	pycom12g00530
rosa_chinensis	RchiOBHm_Chr3g0496581
rosa_laevigata	RLG00000022517
rosa_roxburghii	Rroxscaffold_6G00388900
rosa_rugosa	Rorug03G0284700
rosa_samantha	Rh3AG329900 Rh3BG365700 Rh3CG362700 Rh3DG365900
rosa_wichuraiana	Rw3G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	879
AcsI	RAATTY	2 cut(s)	229, 722
AcuI	CTGAAG	2 cut(s)	570, 722
AfaI	GTAC	3 cut(s)	576, 698, 750
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	7 cut(s)	20, 563, 728, 739, 896, 926, 999
AhlI	ACTAGT	1 cut(s)	827
AjnI	CCWGG	3 cut(s)	9, 47, 291
AluBI	AGCT	8 cut(s)	70, 242, 454, 582, 602, 643, 649, 714
AluI	AGCT	8 cut(s)	70, 242, 454, 582, 602, 643, 649, 714
Alw26I	GTCTC	1 cut(s)	927
AoxI	GGCC	2 cut(s)	297, 568
ApeKI	GCWGC	3 cut(s)	67, 175, 239
ApoI	RAATTY	2 cut(s)	229, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	298, 430
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	4 cut(s)	216, 458, 731, 874
AvaII	GGWCC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	79, 187, 251
BccI	CCATC	3 cut(s)	182, 468, 853
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	11, 49, 293
BciVI	GTATCC	1 cut(s)	45
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	927
BcuI	ACTAGT	1 cut(s)	827
BfaI	CTAG	2 cut(s)	363, 828
BfmI	CTRYAG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	68, 176, 240
BlsI	GCNGC	3 cut(s)	69, 177, 241
Bme1390I	CCNGG	4 cut(s)	11, 49, 293, 572
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	298, 430
BmrFI	CCNGG	4 cut(s)	11, 49, 293, 572
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	187, 268, 503, 535
BmuI	ACTGGG	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	912, 944
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	9, 990
Bse1I	ACTGG	2 cut(s)	220, 492
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	11, 49, 293
BseDI	CCNNGG	2 cut(s)	9, 990
BseGI	GGATG	4 cut(s)	261, 288, 460, 892
BseJI	GATNNNNATC	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	54, 943
BseNI	ACTGG	2 cut(s)	220, 492
BseXI	GCAGC	3 cut(s)	79, 187, 251
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	299, 570
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	974
BsmAI	GTCTC	1 cut(s)	927
BsmBI	CGTCTC	1 cut(s)	927
BsmFI	GGGAC	1 cut(s)	974
BsmI	GAATGC	2 cut(s)	32, 756
BsnI	GGCC	2 cut(s)	299, 570
Bsp143I	GATC	2 cut(s)	86, 202
BspANI	GGCC	2 cut(s)	299, 570
BspCNI	CTCAG	2 cut(s)	55, 942
BspMAI	CTGCAG	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	220, 492
BssECI	CCNNGG	2 cut(s)	9, 990
BssMI	GATC	2 cut(s)	86, 202
BssT1I	CCWWGG	1 cut(s)	990
Bst2UI	CCWGG	3 cut(s)	11, 49, 293
Bst6I	CTCTTC	1 cut(s)	589
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	795, 799
BstDEI	CTNAG	2 cut(s)	63, 929
BstF5I	GGATG	4 cut(s)	261, 288, 460, 892
BstKTI	GATC	2 cut(s)	89, 205
BstMAI	GTCTC	1 cut(s)	927
BstMBI	GATC	2 cut(s)	86, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 491, 512, 588
BstNI	CCWGG	3 cut(s)	11, 49, 293
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	4 cut(s)	9, 47, 291, 570
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	79, 187, 251
BsuI	GTATCC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	299, 570
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	4 cut(s)	261, 288, 460, 892
BtsIMutI	CAGTG	2 cut(s)	213, 485
Cac8I	GCNNGC	2 cut(s)	795, 799
Cfr13I	GGNCC	2 cut(s)	298, 430
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	575, 697, 749
CviAII	CATG	8 cut(s)	41, 110, 269, 326, 512, 683, 794, 883
CviQI	GTAC	3 cut(s)	575, 697, 749
DdeI	CTNAG	2 cut(s)	63, 929
DpnI	GATC	2 cut(s)	88, 204
DpnII	GATC	2 cut(s)	86, 202
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	990
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	570, 722
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	9, 47, 291
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	990
EcoT22I	ATGCAT	2 cut(s)	736, 758
ErhI	CCWWGG	1 cut(s)	990
Esp3I	CGTCTC	1 cut(s)	927
FaeI	CATG	8 cut(s)	44, 113, 272, 329, 515, 686, 797, 886
FaqI	GGGAC	1 cut(s)	974
FatI	CATG	8 cut(s)	40, 109, 268, 325, 511, 682, 793, 882
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	3 cut(s)	68, 176, 240
FokI	GGATG	4 cut(s)	268, 275, 447, 899
Fsp4HI	GCNGC	3 cut(s)	68, 176, 240
FspBI	CTAG	2 cut(s)	363, 828
GluI	GCNGC	3 cut(s)	68, 176, 240
HaeIII	GGCC	2 cut(s)	299, 570
HapII	CCGG	1 cut(s)	571
HgaI	GACGC	1 cut(s)	944
Hin1II	CATG	8 cut(s)	44, 113, 272, 329, 515, 686, 797, 886
HincII	GTYRAC	2 cut(s)	523, 813
HindII	GTYRAC	2 cut(s)	523, 813
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	4 cut(s)	44, 124, 376, 892
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	4 cut(s)	216, 458, 731, 874
Hpy166II	GTNNAC	3 cut(s)	523, 813, 880
Hpy188I	TCNGA	2 cut(s)	544, 932
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	3 cut(s)	523, 813, 880
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	3 cut(s)	311, 395, 414
HpyCH4IV	ACGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 491, 512, 588
HpyF3I	CTNAG	2 cut(s)	63, 929
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	8 cut(s)	44, 113, 272, 329, 515, 686, 797, 886
Ksp22I	TGATCA	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	86, 202
LguI	GCTCTTC	1 cut(s)	589
Lsp1109I	GCAGC	3 cut(s)	79, 187, 251
LweI	GCATC	4 cut(s)	187, 268, 503, 535
MaeI	CTAG	2 cut(s)	363, 828
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	246, 952
MalI	GATC	2 cut(s)	88, 204
MboI	GATC	2 cut(s)	86, 202
MboII	GAAGA	2 cut(s)	576, 922
MfeI	CAATTG	1 cut(s)	77
MluCI	AATT	6 cut(s)	77, 229, 282, 614, 722, 772
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	148, 289, 474, 546
Mph1103I	ATGCAT	2 cut(s)	736, 758
MroXI	GAANNNNTTC	1 cut(s)	583
MseI	TTAA	5 cut(s)	72, 261, 522, 645, 906
MslI	CAYNNNNRTG	3 cut(s)	273, 516, 675
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	4 cut(s)	11, 49, 293, 572
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	2 cut(s)	32, 756
MvaI	CCWGG	3 cut(s)	11, 49, 293
MwoI	GCNNNNNNNGC	4 cut(s)	115, 491, 512, 588
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	86, 202
NlaIII	CATG	8 cut(s)	44, 113, 272, 329, 515, 686, 797, 886
NmuCI	GTSAC	1 cut(s)	246
NsiI	ATGCAT	2 cut(s)	736, 758
NspI	RCATGY	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	589
PctI	GAATGC	2 cut(s)	32, 756
PdmI	GAANNNNTTC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	44, 124, 892
PfoI	TCCNGGA	2 cut(s)	47, 291
PkrI	GCNGC	3 cut(s)	69, 177, 241
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	9, 47, 291
PspGI	CCWGG	3 cut(s)	9, 47, 291
PspPI	GGNCC	2 cut(s)	298, 430
PstI	CTGCAG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	576, 698, 750
RsaNI	GTAC	3 cut(s)	575, 697, 749
RseI	CAYNNNNRTG	3 cut(s)	273, 516, 675
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	5 cut(s)	72, 261, 522, 645, 906
SatI	GCNGC	3 cut(s)	68, 176, 240
Sau3AI	GATC	2 cut(s)	86, 202
Sau96I	GGNCC	2 cut(s)	298, 430
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	4 cut(s)	11, 49, 293, 572
SfaNI	GCATC	4 cut(s)	187, 268, 503, 535
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	3 cut(s)	273, 516, 675
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SpeI	ACTAGT	1 cut(s)	827
SphI	GCATGC	1 cut(s)	797
Sse9I	AATT	6 cut(s)	77, 229, 282, 614, 722, 772
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	363, 828
StyD4I	CCNGG	4 cut(s)	9, 47, 291, 570
StyI	CCWWGG	1 cut(s)	990
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	5 cut(s)	24, 85, 127, 367, 374
TasI	AATT	6 cut(s)	77, 229, 282, 614, 722, 772
TfiI	GAWTC	3 cut(s)	44, 124, 892
Tru1I	TTAA	5 cut(s)	72, 261, 522, 645, 906
Tru9I	TTAA	5 cut(s)	72, 261, 522, 645, 906
TscAI	CASTG	2 cut(s)	220, 492
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	3 cut(s)	67, 175, 239
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	126, 277, 285, 293
TspGWI	ACGGA	2 cut(s)	565, 933
TspRI	CASTG	2 cut(s)	220, 492
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	2 cut(s)	229, 722
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	583
XspI	CTAG	2 cut(s)	363, 828
Zsp2I	ATGCAT	2 cut(s)	736, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.