Rh3CG362700

Annexin A13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017739
Physical Location & Seq
Forward (+)
45283909 .. 45284973
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG362700.1

Sequence Viewer

Length: 729 bp
ATGCCGACCCTGGAATTTGAAATCGAATGCAAAGAGATACATGATTCCTGGATACGACCACCTAAGCAGCTTAATCAATTGGTTCGATCTTTGGCACGACGAAAACGGCAAGAAAGGCAACAGATTCGAGAAACTTACAAGGCAATCTATGGAGAGGACTTGGTAAGCAGACTGCAGCACAAGGCAGATGGGGATGATGCTGATCAAATAACCACTGGGATTTCACCAAATTTGTGTGCAGCTTTGTCACTTTGGATGATTAATCAGCATGAACGTGATGCAATTTTCATCCAGGAGGCCCTTCACAATGACCAGCAAGGTCGTCATGGTAAAAACTATAATGCTCTTGTAGAGATTTTTGCTAGTCGAAAATCGAGTCAAATCCTTCTCATCAAACAAGCATATCACACAAAGTTTAGAAGGCAGTTGGACCAAGATATCATCAATATTGAGCTTCCCCATCCTCACCAAAAGATAGTGGTAGCACTGGTGGCATCACACAGGGCACACCATGCAGATGTTAACCAAGACATCGCAAAGTCTGATGCACGGAGGCTTTTTGAAACAGGCCGGGAACGAAGCTCTTCAGGCATACAAGAAGCTGTCGTATTAGAATTATTTAGCAAACGCAGTATTCCACAGCTTAAGCTTACTTTTTCTTGCTATGAACACATCTATGGACATGACTATAAAAAGGTTCGTGCATTATATTACATTATATTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

242

Amino Acids

28.26

Weight (kDa)

9.03

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 25 - 65 1.1e-06 Annexin
Annexin PF00191 107 - 147 1.6e-07 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017739)

Species Orthologous Gene IDs
malus_domestica MD12G1007300.v1.1
prunus_persica Prupe.7G008200_v2.0.a1
pyrus_communis pycom12g00530
rosa_chinensis RchiOBHm_Chr3g0496581
rosa_laevigata RLG00000022517
rosa_roxburghii Rroxscaffold_6G00388900
rosa_rugosa Rorug03G0284700
rosa_samantha Rh3AG329900 Rh3BG365700 Rh3CG362700 Rh3DG365900
rosa_wichuraiana Rw3G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 14, 229
AcuI CTGAAG 1 cut(s) 570
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 2 cut(s) 20, 563
AjnI CCWGG 3 cut(s) 9, 47, 291
AluBI AGCT 7 cut(s) 70, 242, 454, 582, 602, 643, 649
AluI AGCT 7 cut(s) 70, 242, 454, 582, 602, 643, 649
AoxI GGCC 2 cut(s) 297, 568
ApeKI GCWGC 3 cut(s) 67, 175, 239
ApoI RAATTY 2 cut(s) 14, 229
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 298, 430
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 216, 458
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 508
BbvI GCAGC 3 cut(s) 79, 187, 251
BccI CCATC 2 cut(s) 182, 468
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 3 cut(s) 11, 49, 293
BciVI GTATCC 1 cut(s) 45
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 572
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 644
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 3 cut(s) 68, 176, 240
BlsI GCNGC 3 cut(s) 69, 177, 241
Bme1390I CCNGG 4 cut(s) 11, 49, 293, 572
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 298, 430
BmrFI CCNGG 4 cut(s) 11, 49, 293, 572
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 4 cut(s) 187, 268, 503, 535
BmuI ACTGGG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 220, 492
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 11, 49, 293
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 4 cut(s) 199, 261, 288, 460
BseJI GATNNNNATC 1 cut(s) 201
BseNI ACTGG 2 cut(s) 220, 492
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 3 cut(s) 79, 187, 251
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 299, 570
BsiSI CCGG 1 cut(s) 571
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 2 cut(s) 299, 570
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 2 cut(s) 86, 202
BspANI GGCC 2 cut(s) 299, 570
BspMAI CTGCAG 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 644
BsrI ACTGG 2 cut(s) 220, 492
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 86, 202
Bst2UI CCWGG 3 cut(s) 11, 49, 293
Bst6I CTCTTC 1 cut(s) 589
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 4 cut(s) 199, 261, 288, 460
BstKTI GATC 2 cut(s) 89, 205
BstMBI GATC 2 cut(s) 86, 202
BstMWI GCNNNNNNNGC 4 cut(s) 115, 491, 512, 588
BstNI CCWGG 3 cut(s) 11, 49, 293
BstSCI CCNGG 4 cut(s) 9, 47, 291, 570
BstSFI CTRYAG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 79, 187, 251
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 299, 570
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 4 cut(s) 199, 261, 288, 460
BtsIMutI CAGTG 2 cut(s) 213, 485
Cfr13I GGNCC 2 cut(s) 298, 430
CviAII CATG 5 cut(s) 41, 269, 326, 512, 683
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 88, 204
DpnII GATC 2 cut(s) 86, 202
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 3 cut(s) 9, 47, 291
EcoRV GATATC 1 cut(s) 439
FaeI CATG 5 cut(s) 44, 272, 329, 515, 686
FatI CATG 5 cut(s) 40, 268, 325, 511, 682
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 68, 176, 240
FokI GGATG 4 cut(s) 206, 268, 275, 447
Fsp4HI GCNGC 3 cut(s) 68, 176, 240
FspBI CTAG 1 cut(s) 363
GluI GCNGC 3 cut(s) 68, 176, 240
HaeIII GGCC 2 cut(s) 299, 570
HapII CCGG 1 cut(s) 571
Hin1II CATG 5 cut(s) 44, 272, 329, 515, 686
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 3 cut(s) 44, 124, 376
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 1 cut(s) 571
HphI GGTGA 2 cut(s) 216, 458
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 523
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 311, 395, 414
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 7 cut(s) 30, 175, 239, 281, 515, 548, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 491, 512, 588
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 5 cut(s) 44, 272, 329, 515, 686
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 2 cut(s) 86, 202
LguI GCTCTTC 1 cut(s) 589
Lsp1109I GCAGC 3 cut(s) 79, 187, 251
LweI GCATC 4 cut(s) 187, 268, 503, 535
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 246
MalI GATC 2 cut(s) 88, 204
MboI GATC 2 cut(s) 86, 202
MboII GAAGA 1 cut(s) 576
MfeI CAATTG 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 5 cut(s) 14, 77, 229, 282, 614
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 4 cut(s) 148, 289, 474, 546
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 4 cut(s) 72, 261, 522, 645
MslI CAYNNNNRTG 3 cut(s) 273, 516, 675
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 4 cut(s) 11, 49, 293, 572
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 3 cut(s) 11, 49, 293
MwoI GCNNNNNNNGC 4 cut(s) 115, 491, 512, 588
NciI CCSGG 1 cut(s) 572
NdeII GATC 2 cut(s) 86, 202
NlaIII CATG 5 cut(s) 44, 272, 329, 515, 686
NmuCI GTSAC 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 589
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 583
PfeI GAWTC 2 cut(s) 44, 124
PfoI TCCNGGA 2 cut(s) 47, 291
PkrI GCNGC 3 cut(s) 69, 177, 241
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 9, 47, 291
PspGI CCWGG 3 cut(s) 9, 47, 291
PspPI GGNCC 2 cut(s) 298, 430
PstI CTGCAG 1 cut(s) 177
RseI CAYNNNNRTG 3 cut(s) 273, 516, 675
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 4 cut(s) 72, 261, 522, 645
SatI GCNGC 3 cut(s) 68, 176, 240
Sau3AI GATC 2 cut(s) 86, 202
Sau96I GGNCC 2 cut(s) 298, 430
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 4 cut(s) 11, 49, 293, 572
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 4 cut(s) 187, 268, 503, 535
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 273, 516, 675
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 5 cut(s) 14, 77, 229, 282, 614
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 9, 47, 291, 570
TaiI ACGT 1 cut(s) 277
TaqI TCGA 5 cut(s) 24, 85, 127, 367, 374
TasI AATT 5 cut(s) 14, 77, 229, 282, 614
TfiI GAWTC 2 cut(s) 44, 124
Tru1I TTAA 4 cut(s) 72, 261, 522, 645
Tru9I TTAA 4 cut(s) 72, 261, 522, 645
TscAI CASTG 2 cut(s) 220, 492
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 3 cut(s) 67, 175, 239
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 3 cut(s) 277, 285, 681
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 2 cut(s) 220, 492
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 430
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 14, 229
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.