Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006121

Physical Location & Seq

Genomic Coordinates Forward (+)

19577994 .. 19592249

Gene Structure 14256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG092100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGAGAAGCAAATCATGGGAGAGTTTGTACGTATATTGAAGATTAGCAGAAATATGACTGTTTCACTTCAGTTGCTGCAGACAATCAGCATTATGATACAGAACCTAAAAAATGAACATGCTATATATTACATGTTCAGTAATGAACATATGAACTACTTAATAACGTACTCATTTGATTTTAAGAATGAAGAGCTACTTTCTTACTATATATCCTTCTTAAGAGCAATAAGTGGAAAGCTAGATAGAAATACAATTTCTCTGCTTGTAAAGACTCAAGAGGATGAAGTTGTTTCATTTCCGCTGTATGTTGAGGCAATACGATTTGCTTTTCATGAGGAGAGCATGGTCCGCACTGCTGTACGGGCTCTTACGCTTAATGTTTATCACGTTGGAGATGATTCTGTCAATAGATATGTCACCAATGCCCCTCATTCAGATTATTTTTCAAACTTGGTTAAATTTTTCCGGAAGCAGTGCATCGATCTAAATGTATTGGTTTCTGGCACTACGACAAACCTGGGTGCAGACACAACCTTGTCAATTCCTGCTGCTGTTGATGAGATCGAGGACAATCTCTACTATTTCAGTGATATTATTTCTGCCGGAATTCCTGATGTTGGGAGGTTATTCACAGACAACATATTGCAGCTTTTGATATTTCCATTGCTTCTACCTTCTCTAACACTAAAAGCTGTCAAGGGGATTCAAATGGGTGCTGTCACGTCTTTGTATTTGATTTGTTGCATCTTGCGCATAGTAAAAATCAAGGATCTGTCAAATACTATTGCTGCTGCCCTATTCTGTCCGTTAGAAGCTTTCTTATCAAAGTCTGTTGCTGAACCCAATGGCTACATGTCTGGTTATGATGTTGCCCATGAAAGCCAACCACCAGGCAGTAATAATCTAATTAAGGCAGAAGTGGGAAATTTAAGTGTTGATGTGGCAAACTTGTCAATCTCTCCCCAAATCCAGCCAGTTGATGTCAGTATTGCAACAGGAAATGATAGTTGTGATTGTCATTTGCCTTTGAGGGAGGCTTTGCTTTCTTACCTTACGAGTGGGAACGATGTACAAGTTTCGGGTTCATTGAGTGTGCTGGCTACTTTGTTGCAAACAAAAGAATTGGATGAATCAATGTCAGATGCTCTGGGAATACTTCCTCAACGCAAACAGCATAAGAAACTTCTGCTGCAAGCTTTGGTTGGTGAAAGCTCAGGTGAAGAGCAACTTTTTTCTTCAGAAAGTAGCTCCTTGAGAAACGGAATTGAATTTGGCAGTGAGCTTGATGGCTGTCTACAAAAGCTTAAGGAACAGTATGGAGTATCATGTTCTTTTCTGGAAGTGAGAGCTAGCCCTCGTGTACATAGATTTCAGGTGCTTGATGCATTGGTCAGTGTCTTCTGCCGTTCAAATTTATCGGCGGAGACTTTATGGGATGGAGGTTGGCTTTTGCGTCAATTGCTTCCTTATAGTGAGGCAGAATTCAACAGCCATCATCGGAAGTTGCTGAAGGAATCGTACAAGAACTGTGCTAGTGCTCTTATTGAGGAGACTAGAGGAATATGGCCGGATATACTTGTAACAGTGCTCTGTGATGAATGGAAAAAGTGCAAGAGAGGAATAGAGGCATCATCCCCTCGCAAAGAGCCCAAGGACATTTTGTTTTCATCTCGAAAGTTCTCCACTGAAGATGGTATCACAAGCGATTCATCGTTTGCTGCTGGTGAAAGGATGTGCGAGTTGGTGAAGGTGTTTGTACTTCTACATCAACTTCAAATTTTCACCCGTGGTAGACCTTTGCCTGAGCAACCTCCTATTTATCCTCCAGCTGACCTTTTAGAAGACTCTCGTGCAAAGAGTGCTGGCATAGATGCTTCAGGTCCCAAGCTTGGTAATGAGCTCAGACTTGTTGATGCCGTGCCTTGTAGAATTGCGTTTGAGAGGGGTAAAGAACGTCACTTTTGCTTTCTAGCAATCTCTTTGGGAGAATCAGGGTGGGTTGTTTTAGCTGAAGAATTACCCTTGAAGCAGCATCATGGTGTCGTTCGTGTGGCTGCACCTTTGGCTGGTTGCAATCCAAAAATTGATGATAAACATTCGAAATGGTTACACTTGCGGATCCGTCCATATATTCTACCCTCAATGGATCCTGCTAGATCTGGTGCATATGGGAAAGTGAAGACAAAAGCTTTGGTTGATGGGAGATGGACTCTTGCATTCAGGGATGAAGAATCTTGCAAATCTGCTATGGCTATGATTTCGGAGGAGCTAAATCTACAAAGTAATGAGGTGGGCAGAAGACTAAAACCTTTACTTGACCTTGAAACCGTTGTACAATCTTCAAACCCATCTCTAGGTCCTCCCGAGGCTTCCTCTTCTTATTCAACACCTTCCAATTCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007034 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0010638 GO:0012505 GO:0016020 GO:0016192 GO:0019898 GO:0030154 GO:0032502 GO:0033043 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044088 GO:0044090 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045165 GO:0046148 GO:0046283 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:1901576 GO:1903415

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPL

Protein Analysis

802

Amino Acids

89.15

Weight (kDa)

5.81

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPL	PF09758	1 - 129	3.8e-44	Uncharacterised conserved protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0006121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28430
fragaria_vesca	FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030
malus_domestica	MD13G1240300.v1.1
prunus_persica	Prupe.1G073600_v2.0.a1 Prupe.1G073600_v2.0.a1 Prupe.1G073600_v2.0.a1
pyrus_communis	pycom13g21280 pycom16g20730
rosa_chinensis	RchiOBHm_Chr4g0399151
rosa_laevigata	RLG00000009295
rosa_multiflora	Rmu_sc0005882.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344120
rosa_rugosa	Rorug04G0014200
rosa_samantha	Rh4AG092100 Rh4BG090200 Rh4CG100600 Rh4DG084700
rosa_wichuraiana	Rw4G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	755
AccI	GTMKAC	2 cut(s)	1297, 1795
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	4 cut(s)	302, 352, 1424, 2119
AclWI	GGATC	5 cut(s)	780, 2116, 2129, 2144, 2157
AcoI	YGGCCR	1 cut(s)	1568
AcsI	RAATTY	7 cut(s)	461, 609, 928, 1271, 1414, 1484, 1779
AcuI	CTGAAG	6 cut(s)	53, 1224, 1532, 1710, 1863, 2034
AfaI	GTAC	8 cut(s)	30, 170, 363, 1074, 1365, 1523, 1761, 2337
AfiI	CCNNNNNNNGG	4 cut(s)	620, 1892, 2069, 2357
AflII	CTTAAG	2 cut(s)	220, 1307
AflIII	ACRYGT	2 cut(s)	132, 855
AjiI	CACGTC	1 cut(s)	726
AjnI	CCWGG	2 cut(s)	519, 892
Alw21I	GWGCWC	3 cut(s)	1543, 1593, 1905
Alw26I	GTCTC	2 cut(s)	1421, 1547
AlwI	GGATC	5 cut(s)	780, 2116, 2129, 2144, 2157
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	2366
Aor13HI	TCCGGA	1 cut(s)	468
AoxI	GGCC	1 cut(s)	1568
ApeKI	GCWGC	9 cut(s)	76, 551, 649, 791, 794, 1192, 1721, 2032, 2057
ApoI	RAATTY	7 cut(s)	461, 609, 928, 1271, 1414, 1484, 1779
ArsI	GACNNNNNNTTYG	2 cut(s)	2176, 2208
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	349, 1883, 2360
AsuHPI	GGTGA	6 cut(s)	412, 1220, 1232, 1739, 1759, 1777
AsuII	TTCGAA	1 cut(s)	2102
AsuNHI	GCTAGC	1 cut(s)	1352
AvaI	CYCGRG	1 cut(s)	2366
AvaII	GGWCC	3 cut(s)	349, 1883, 2360
BamHI	GGATCC	2 cut(s)	2121, 2149
BanII	GRGCYC	3 cut(s)	370, 1653, 1905
BarI	GAAGNNNNNNTAC	2 cut(s)	1505, 1537
BauI	CACGAG	2 cut(s)	1359, 1851
BbsI	GAAGAC	4 cut(s)	1393, 1851, 2189, 2308
Bbv12I	GWGCWC	3 cut(s)	1543, 1593, 1905
BbvI	GCAGC	9 cut(s)	63, 538, 661, 778, 781, 1179, 1708, 2044, 2044
BccI	CCATC	7 cut(s)	1283, 1433, 1503, 1688, 2195, 2202, 2359
BceAI	ACGGC	2 cut(s)	1392, 1904
BciT130I	CCWGG	2 cut(s)	521, 894
BcoDI	GTCTC	2 cut(s)	1421, 1547
BfaI	CTAG	8 cut(s)	242, 1353, 1536, 1557, 1973, 2157, 2357, 2407
BfmI	CTRYAG	1 cut(s)	77
BfrI	CTTAAG	2 cut(s)	220, 1307
BglII	AGATCT	1 cut(s)	2159
BisI	GCNGC	9 cut(s)	77, 552, 650, 792, 795, 1193, 1722, 2033, 2058
BlsI	GCNGC	9 cut(s)	78, 553, 651, 793, 796, 1194, 1723, 2034, 2059
Bme1390I	CCNGG	2 cut(s)	521, 894
Bme18I	GGWCC	3 cut(s)	349, 1883, 2360
BmeT110I	CYCGRG	1 cut(s)	2366
BmgBI	CACGTC	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	349, 1883, 2360
BmiI	GGNNCC	3 cut(s)	1885, 2123, 2151
BmrFI	CCNGG	2 cut(s)	521, 894
BmsI	GCATC	8 cut(s)	489, 756, 1135, 1375, 1640, 1864, 1906, 2044
BmtI	GCTAGC	1 cut(s)	1356
BpiI	GAAGAC	4 cut(s)	1393, 1851, 2189, 2308
BplI	GAGNNNNNCTC	4 cut(s)	2197, 2229, 2360, 2392
BpmI	CTGGAG	1 cut(s)	1812
Bpu10I	CCTNAGC	2 cut(s)	1216, 1806
Bpu14I	TTCGAA	1 cut(s)	2102
BpuEI	CTTGAG	2 cut(s)	261, 1276
Bsa29I	ATCGAT	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	520, 1653, 1789, 2367
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	4 cut(s)	620, 1892, 2069, 2357
Bse1I	ACTGG	1 cut(s)	977
Bse3DI	GCAATG	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	521, 894
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	4 cut(s)	520, 1653, 1789, 2367
BseGI	GGATG	6 cut(s)	289, 1135, 1444, 1634, 1740, 2233
BseLI	CCNNNNNNNGG	4 cut(s)	620, 1892, 2069, 2357
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	3 cut(s)	1230, 1797, 1918
BseNI	ACTGG	1 cut(s)	977
BseRI	GAGGAG	3 cut(s)	353, 1565, 2282
BseXI	GCAGC	9 cut(s)	63, 538, 661, 778, 781, 1179, 1708, 2044, 2044
BsgI	GTGCAG	2 cut(s)	546, 2043
BshFI	GGCC	1 cut(s)	1570
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	3 cut(s)	1543, 1593, 1905
BsiHKCI	CYCGRG	1 cut(s)	2366
BsiSI	CCGG	3 cut(s)	469, 606, 1571
BslFI	GGGAC	1 cut(s)	1869
BslI	CCNNNNNNNGG	4 cut(s)	620, 1892, 2069, 2357
BsmAI	GTCTC	2 cut(s)	1421, 1547
BsmFI	GGGAC	1 cut(s)	1869
BsmI	GAATGC	1 cut(s)	2219
BsnI	GGCC	1 cut(s)	1570
BsoBI	CYCGRG	1 cut(s)	2366
Bsp119I	TTCGAA	1 cut(s)	2102
Bsp1286I	GDGCHC	5 cut(s)	370, 1543, 1593, 1653, 1905
Bsp13I	TCCGGA	1 cut(s)	468
Bsp1407I	TGTACA	3 cut(s)	1072, 1363, 2335
Bsp143I	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
BspACI	CCGC	4 cut(s)	302, 352, 1424, 2119
BspANI	GGCC	1 cut(s)	1570
BspCNI	CTCAG	3 cut(s)	1229, 1798, 1917
BspDI	ATCGAT	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	1885, 2123, 2151
BspMAI	CTGCAG	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	1356
BspPI	GGATC	5 cut(s)	780, 2116, 2129, 2144, 2157
BspQI	GCTCTTC	2 cut(s)	186, 1218
BspT104I	TTCGAA	1 cut(s)	2102
BspTI	CTTAAG	2 cut(s)	220, 1307
BsrDI	GCAATG	1 cut(s)	665
BsrGI	TGTACA	3 cut(s)	1072, 1363, 2335
BsrI	ACTGG	1 cut(s)	977
BssECI	CCNNGG	4 cut(s)	520, 1653, 1789, 2367
BssMI	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
BssSI	CACGAG	2 cut(s)	1359, 1851
BssT1I	CCWWGG	1 cut(s)	1653
Bst2BI	CACGAG	2 cut(s)	1359, 1851
Bst2UI	CCWGG	2 cut(s)	521, 894
Bst4CI	ACNGT	5 cut(s)	61, 1317, 1532, 1588, 2332
Bst6I	CTCTTC	3 cut(s)	186, 1218, 2383
BstAFI	CTTAAG	2 cut(s)	220, 1307
BstAPI	GCANNNNNTGC	1 cut(s)	1862
BstAUI	TGTACA	3 cut(s)	1072, 1363, 2335
BstBAI	YACGTR	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	2102
BstC8I	GCNNGC	4 cut(s)	1101, 1197, 1354, 1867
BstDEI	CTNAG	3 cut(s)	1216, 1806, 1904
BstDSI	CCRYGG	1 cut(s)	1789
BstF5I	GGATG	6 cut(s)	289, 1135, 1444, 1634, 1740, 2233
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	6 cut(s)	487, 567, 775, 2124, 2152, 2162
BstMAI	GTCTC	2 cut(s)	1421, 1547
BstMBI	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
BstMWI	GCNNNNNNNGC	6 cut(s)	351, 365, 753, 1462, 1862, 2066
BstNI	CCWGG	2 cut(s)	521, 894
BstNSI	RCATGY	3 cut(s)	122, 136, 859
BstSCI	CCNGG	2 cut(s)	519, 892
BstSFI	CTRYAG	1 cut(s)	77
BstSNI	TACGTA	1 cut(s)	32
BstV1I	GCAGC	9 cut(s)	63, 538, 661, 778, 781, 1179, 1708, 2044, 2044
BstV2I	GAAGAC	4 cut(s)	1393, 1851, 2189, 2308
BstX2I	RGATCY	4 cut(s)	772, 2121, 2149, 2159
BstYI	RGATCY	4 cut(s)	772, 2121, 2149, 2159
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	1570
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	1789
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	6 cut(s)	289, 1135, 1444, 1634, 1740, 2233
BtsI	GCAGTG	3 cut(s)	354, 482, 1285
BtsIMutI	CAGTG	7 cut(s)	354, 482, 595, 1285, 1402, 1593, 1686
Cac8I	GCNNGC	4 cut(s)	1101, 1197, 1354, 1867
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	349, 1883, 2360
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	1445
Csp6I	GTAC	8 cut(s)	29, 169, 362, 1073, 1364, 1522, 1760, 2336
CviAII	CATG	9 cut(s)	16, 119, 133, 335, 346, 856, 878, 1329, 2039
CviQI	GTAC	8 cut(s)	29, 169, 362, 1073, 1364, 1522, 1760, 2336
DdeI	CTNAG	3 cut(s)	1216, 1806, 1904
DpnI	GATC	6 cut(s)	486, 566, 774, 2123, 2151, 2161
DpnII	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
EaeI	YGGCCR	1 cut(s)	1568
Eam1104I	CTCTTC	3 cut(s)	186, 1218, 2383
EarI	CTCTTC	3 cut(s)	186, 1218, 2383
EciI	GGCGGA	1 cut(s)	1439
Ecl136II	GAGCTC	1 cut(s)	1903
Eco105I	TACGTA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	1653
Eco24I	GRGCYC	3 cut(s)	370, 1653, 1905
Eco47I	GGWCC	3 cut(s)	349, 1883, 2360
Eco53kI	GAGCTC	1 cut(s)	1903
Eco57I	CTGAAG	6 cut(s)	53, 1224, 1532, 1710, 1863, 2034
Eco88I	CYCGRG	1 cut(s)	2366
EcoICRI	GAGCTC	1 cut(s)	1903
EcoO109I	RGGNCCY	2 cut(s)	1883, 2360
EcoRI	GAATTC	2 cut(s)	609, 1484
EcoRII	CCWGG	2 cut(s)	519, 892
EcoT14I	CCWWGG	1 cut(s)	1653
EcoT22I	ATGCAT	1 cut(s)	1390
EcoT38I	GRGCYC	3 cut(s)	370, 1653, 1905
ErhI	CCWWGG	1 cut(s)	1653
FaeI	CATG	9 cut(s)	19, 122, 136, 338, 349, 859, 881, 1332, 2042
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 1215, 1247
FaqI	GGGAC	1 cut(s)	1869
FatI	CATG	9 cut(s)	15, 118, 132, 334, 345, 855, 877, 1328, 2038
FauNDI	CATATG	2 cut(s)	150, 2170
FblI	GTMKAC	2 cut(s)	1297, 1795
Fnu4HI	GCNGC	9 cut(s)	77, 552, 650, 792, 795, 1193, 1722, 2033, 2058
FokI	GGATG	6 cut(s)	296, 1142, 1451, 1621, 1747, 2240
FriOI	GRGCYC	3 cut(s)	370, 1653, 1905
Fsp4HI	GCNGC	9 cut(s)	77, 552, 650, 792, 795, 1193, 1722, 2033, 2058
FspBI	CTAG	8 cut(s)	242, 1353, 1536, 1557, 1973, 2157, 2357, 2407
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	9 cut(s)	77, 552, 650, 792, 795, 1193, 1722, 2033, 2058
GsuI	CTGGAG	1 cut(s)	1812
HaeIII	GGCC	1 cut(s)	1570
HapII	CCGG	3 cut(s)	469, 606, 1571
HgaI	GACGC	1 cut(s)	1445
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	9 cut(s)	19, 122, 136, 338, 349, 859, 881, 1332, 2042
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HindIII	AAGCTT	5 cut(s)	816, 1197, 1304, 1889, 2190
HpaII	CCGG	3 cut(s)	469, 606, 1571
HphI	GGTGA	6 cut(s)	412, 1220, 1232, 1739, 1759, 1777
Hpy166II	GTNNAC	3 cut(s)	1298, 1364, 1796
Hpy188I	TCNGA	6 cut(s)	439, 1144, 1243, 1503, 1907, 2266
Hpy188III	TCNNGA	7 cut(s)	278, 335, 469, 614, 1340, 1674, 2366
Hpy8I	GTNNAC	3 cut(s)	1298, 1364, 1796
HpyAV	CCTTC	5 cut(s)	226, 687, 1507, 1744, 2403
HpyCH4III	ACNGT	5 cut(s)	61, 1317, 1532, 1588, 2332
HpyCH4IV	ACGT	5 cut(s)	31, 167, 390, 725, 1957
HpyF10VI	GCNNNNNNNGC	6 cut(s)	351, 365, 753, 1462, 1862, 2066
HpyF3I	CTNAG	3 cut(s)	1216, 1806, 1904
HpySE526I	ACGT	5 cut(s)	31, 167, 390, 725, 1957
Hsp92II	CATG	9 cut(s)	19, 122, 136, 338, 349, 859, 881, 1332, 2042
HspAI	GCGC	1 cut(s)	754
Kpn2I	TCCGGA	1 cut(s)	468
Kzo9I	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
LguI	GCTCTTC	2 cut(s)	186, 1218
LmnI	GCTCC	2 cut(s)	1256, 2269
Lsp1109I	GCAGC	9 cut(s)	63, 538, 661, 778, 781, 1179, 1708, 2044, 2044
LweI	GCATC	8 cut(s)	489, 756, 1135, 1375, 1640, 1864, 1906, 2044
MaeI	CTAG	8 cut(s)	242, 1353, 1536, 1557, 1973, 2157, 2357, 2407
MaeII	ACGT	5 cut(s)	31, 167, 390, 725, 1957
MaeIII	GTNAC	5 cut(s)	418, 721, 1582, 1958, 2109
MalI	GATC	6 cut(s)	486, 566, 774, 2123, 2151, 2161
MboI	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
MfeI	CAATTG	1 cut(s)	1460
MflI	RGATCY	4 cut(s)	772, 2121, 2149, 2159
MhlI	GDGCHC	5 cut(s)	370, 1543, 1593, 1653, 1905
MlyI	GAGTC	3 cut(s)	268, 1841, 2206
MmeI	TCCRAC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	1390
MroI	TCCGGA	1 cut(s)	468
MseI	TTAA	8 cut(s)	161, 183, 221, 378, 459, 912, 932, 1308
MslI	CAYNNNNRTG	1 cut(s)	2040
MspA1I	CMGCKG	2 cut(s)	304, 1832
MspCI	CTTAAG	2 cut(s)	220, 1307
MspI	CCGG	3 cut(s)	469, 606, 1571
MspR9I	CCNGG	2 cut(s)	521, 894
MunI	CAATTG	1 cut(s)	1460
Mva1269I	GAATGC	1 cut(s)	2219
MvaI	CCWGG	2 cut(s)	521, 894
MwoI	GCNNNNNNNGC	6 cut(s)	351, 365, 753, 1462, 1862, 2066
NdeI	CATATG	2 cut(s)	150, 2170
NdeII	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
NheI	GCTAGC	1 cut(s)	1352
NlaIII	CATG	9 cut(s)	19, 122, 136, 338, 349, 859, 881, 1332, 2042
NlaIV	GGNNCC	3 cut(s)	1885, 2123, 2151
NmuCI	GTSAC	3 cut(s)	418, 721, 1958
NsbI	TGCGCA	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	1390
NspI	RCATGY	3 cut(s)	122, 136, 859
NspV	TTCGAA	1 cut(s)	2102
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	132, 855
PciSI	GCTCTTC	2 cut(s)	186, 1218
PctI	GAATGC	1 cut(s)	2219
PfeI	GAWTC	7 cut(s)	401, 706, 1133, 1517, 1709, 1991, 2234
PkrI	GCNGC	9 cut(s)	78, 553, 651, 793, 796, 1194, 1723, 2034, 2059
PleI	GAGTC	3 cut(s)	268, 1841, 2206
PpsI	GAGTC	3 cut(s)	268, 1841, 2206
Ppu21I	YACGTR	1 cut(s)	32
PpuMI	RGGWCCY	2 cut(s)	1883, 2360
PscI	ACATGT	2 cut(s)	132, 855
Psp124BI	GAGCTC	1 cut(s)	1905
Psp5II	RGGWCCY	2 cut(s)	1883, 2360
Psp6I	CCWGG	2 cut(s)	519, 892
PspGI	CCWGG	2 cut(s)	519, 892
PspN4I	GGNNCC	3 cut(s)	1885, 2123, 2151
PspPI	GGNCC	3 cut(s)	349, 1883, 2360
PspPPI	RGGWCCY	2 cut(s)	1883, 2360
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	76
PsuI	RGATCY	4 cut(s)	772, 2121, 2149, 2159
PvuII	CAGCTG	1 cut(s)	1832
RsaI	GTAC	8 cut(s)	30, 170, 363, 1074, 1365, 1523, 1761, 2337
RsaNI	GTAC	8 cut(s)	29, 169, 362, 1073, 1364, 1522, 1760, 2336
RseI	CAYNNNNRTG	1 cut(s)	2040
SacI	GAGCTC	1 cut(s)	1905
SapI	GCTCTTC	2 cut(s)	186, 1218
SaqAI	TTAA	8 cut(s)	161, 183, 221, 378, 459, 912, 932, 1308
SatI	GCNGC	9 cut(s)	77, 552, 650, 792, 795, 1193, 1722, 2033, 2058
Sau3AI	GATC	6 cut(s)	484, 564, 772, 2121, 2149, 2159
Sau96I	GGNCC	3 cut(s)	349, 1883, 2360
SchI	GAGTC	3 cut(s)	268, 1841, 2206
ScrFI	CCNGG	2 cut(s)	521, 894
SduI	GDGCHC	5 cut(s)	370, 1543, 1593, 1653, 1905
SfaNI	GCATC	8 cut(s)	489, 756, 1135, 1375, 1640, 1864, 1906, 2044
SfcI	CTRYAG	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	2102
SinI	GGWCC	3 cut(s)	349, 1883, 2360
SmiMI	CAYNNNNRTG	1 cut(s)	2040
SmlI	CTYRAG	4 cut(s)	220, 276, 1255, 1307
SmoI	CTYRAG	4 cut(s)	220, 276, 1255, 1307
SnaBI	TACGTA	1 cut(s)	32
SsiI	CCGC	4 cut(s)	302, 352, 1424, 2119
SspMI	CTAG	8 cut(s)	242, 1353, 1536, 1557, 1973, 2157, 2357, 2407
SstI	GAGCTC	1 cut(s)	1905
StyD4I	CCNGG	2 cut(s)	519, 892
StyI	CCWWGG	1 cut(s)	1653
TaaI	ACNGT	5 cut(s)	61, 1317, 1532, 1588, 2332
TaiI	ACGT	5 cut(s)	34, 170, 393, 728, 1960
TaqI	TCGA	4 cut(s)	483, 567, 1675, 2102
TatI	WGTACW	4 cut(s)	1072, 1363, 1759, 2335
TfiI	GAWTC	7 cut(s)	401, 706, 1133, 1517, 1709, 1991, 2234
Tru1I	TTAA	8 cut(s)	161, 183, 221, 378, 459, 912, 932, 1308
Tru9I	TTAA	8 cut(s)	161, 183, 221, 378, 459, 912, 932, 1308
TscAI	CASTG	7 cut(s)	361, 482, 595, 1285, 1402, 1593, 1693
TseFI	GTSAC	3 cut(s)	418, 721, 1958
TseI	GCWGC	9 cut(s)	76, 551, 649, 791, 794, 1192, 1721, 2032, 2057
Tsp45I	GTSAC	3 cut(s)	418, 721, 1958
TspGWI	ACGGA	3 cut(s)	798, 1278, 2114
TspRI	CASTG	7 cut(s)	361, 482, 595, 1285, 1402, 1593, 1693
Vha464I	CTTAAG	2 cut(s)	220, 1307
VpaK11BI	GGWCC	3 cut(s)	349, 1883, 2360
XapI	RAATTY	7 cut(s)	461, 609, 928, 1271, 1414, 1484, 1779
XceI	RCATGY	3 cut(s)	122, 136, 859
XmiI	GTMKAC	2 cut(s)	1297, 1795
XspI	CTAG	8 cut(s)	242, 1353, 1536, 1557, 1973, 2157, 2357, 2407
Zsp2I	ATGCAT	1 cut(s)	1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.