Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006121

Physical Location & Seq

Genomic Coordinates Forward (+)

15462792 .. 15473898

Gene Structure 11107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG090200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGTGGTTTTCGTTTTGGAGATCCAGGGATCGATTCTCCTTCGATGAGCTTAGGTATTTAACTGATCAGCTGGTGAAAATTCAAGTTGTGAATGACGTTAACAAGGATTTCGTTATTGAAGCTTTGAGATCAATTGCGGAGTTGATAACTTATGGCGACCAGCATGACACAACTTTTTTTGAATTTTTTATGGAGAAGCAAATCATGGGAGAGTTTGTACGTATATTGAAGATTAGCAGAAATATGACTGTTTCACTTCAGTTGCTGCAGACAATCAGCATTATGATACAGAACCTAAAAAATGAACATGCTATATATTACATGTTCAGTAATGAACATATGAACTACTTAATAACTTACTCATTTGATTTTAAGAATGAAGAGCTACTTTCTTACTATATATCCTTCTTAAGAGCAATAAGTGGAAAGCTAGATAGAAATACAATTTCTCTGCTTGTAAAGACTCAAGAGGATGAAGTTGTTTCATTTCCGCTGTATGTTGAGGCAATACGATTTGCTTTTCATGAGGAGAGCATGGTCCGCACTGCTGTACGGGCTCTGACGCTTAATGTTTATCACGTTGGAGATGATTCTGTCAATAGATATGTCACCAGTGCCCCTCATTCAGATTATTTTTCAAACTTGGTTAAATTTTTCCGGAAGCAGTGCATCGATCTAAATGTATTGGTTTCTGGCACTACGACAAACCTGGGTGCAGACACAACCTTGTCAATTCCTGCTGCTGTTGATGAGATTGAGGACAATCTCTACTATTTCAGTGATATTATTTCTGCGGGAATTCCTGATGTTGGGAGGTTATTCACAGACAACATATTGCAGCTTTTGATATTTCCATTGCTTCTACCTTCTCTAACACTAAAAGCTGTCAAGCAAGCTTTGGTTGGTGAAAGCTCAGGTGAAGAGCAACTTTTTTCTTCAGAAAGTGGCTCCTTGAGAAACGGAATTGAATTTGGTAGTGAGCTTGATGGCTGTCTACAAAAGCTTAAGGAACAGTATGGAGTATCATGTCCTTTTCTGGAAGTGAGAGCTAGCCCTCGTGTACATAGATTTCAGGTGCTTGATGCATTGGTCAGTGTCTTCTGCCGTTCAAATTTATCGGCGGAGACTTTATGGGATGGAGGTTGGCTTTTGCGTCAATTACTTCCTTATAGTGAGGCAGAATTCAACAGCCATCATCGGAAGTTGCTGAAGGAATCGTACAAGAACTGTGCTAGTGCTCTTATTGAGGAGACTAGAGGAATATGGCCGGATATACTTGTAACAGTGCTCTGTGATGAATGGAAAAAGTGCAAGAGAGGAATAGAGGCATCATCCCCTTGCAAAGAGCCCAAGGACATTTTGTTTTCATCTCGAAAGTTCTCCACTGAAGATGGTATCACAAGCGATTCATCGTTTGCTGCTGGTGAAAGGATGTGTGAGTTGGTGAAGGTGTTTGTACTTCTACATCAACTTCAAATTTTCACCCTTGGTAGACCTTTGCCTGAGCAACCTTCTATTTATCCTCCAGCTGACCTTTTAGAAGACTCTCGTGCAAAGAGTGCTGGCATAGATGCTTCAGGTCCCAAGCTTGGTAATGAGCTAAGACTTGTTGATGCCGTGCCTTGTAGAATTGCGTTTGAGAGGGGTAAAGAACGTCACTTTTGCTTTCTAGCAATCTCTTTGGGAGAATCAGGGTGGGTTGTTTTAGCTGAAGAATTACCCTTGAAGCAGCATCATGGTGTCGTTCGTGTGGCTGCACCTTTGGCTGGTTGCAATCCAAAAATTGATGATAAACATTCGAAATGGTTACACTTGCGGATCCGTCCATATATTCTACCCTCAATGGATCCTGCTAGATCTGGTGCATATGGGAAAGTGAAGACAAAAGCTTTGGTTGATGGGAGATGGACTCTTGCATTCAGGGATGAAGAATCTTGCAAATCTGCTTTGGCTATGATTTCGGAGGAGCTAAATCTACAAAGTAATGAGGTGGGCAGAAGACTAAAACCTTTACTTGACCTCGAAACCGTTGTACAATCTTCAAACCCTTCTCTAGGTCCTCCCGAGGCTTCCTCTTCTTATTCAACACCTTCCAATTCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007034 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0010638 GO:0012505 GO:0016020 GO:0016192 GO:0019898 GO:0030154 GO:0032502 GO:0033043 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044088 GO:0044090 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045165 GO:0046148 GO:0046283 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:1901576 GO:1903415

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPL

Protein Analysis

701

Amino Acids

79.28

Weight (kDa)

5.66

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPL	PF09758	42 - 192	5.4e-55	Uncharacterised conserved protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28430
fragaria_vesca	FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030 FvH4_4g07030
malus_domestica	MD13G1240300.v1.1
prunus_persica	Prupe.1G073600_v2.0.a1 Prupe.1G073600_v2.0.a1 Prupe.1G073600_v2.0.a1
pyrus_communis	pycom13g21280 pycom16g20730
rosa_chinensis	RchiOBHm_Chr4g0399151
rosa_laevigata	RLG00000009295
rosa_multiflora	Rmu_sc0005882.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344120
rosa_rugosa	Rorug04G0014200
rosa_samantha	Rh4AG092100 Rh4BG090200 Rh4CG100600 Rh4DG084700
rosa_wichuraiana	Rw4G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	994, 1492
AccIII	TCCGGA	1 cut(s)	657
AciI	CCGC	6 cut(s)	137, 491, 541, 794, 1121, 1816
AclWI	GGATC	6 cut(s)	15, 36, 1813, 1826, 1841, 1854
AcoI	YGGCCR	1 cut(s)	1265
AcsI	RAATTY	8 cut(s)	78, 182, 650, 798, 968, 1111, 1181, 1476
AcuI	CTGAAG	6 cut(s)	242, 921, 1229, 1407, 1560, 1731
AfaI	GTAC	6 cut(s)	219, 552, 1062, 1220, 1458, 2034
AfiI	CCNNNNNNNGG	4 cut(s)	809, 1589, 1766, 2054
AflII	CTTAAG	2 cut(s)	409, 1004
AflIII	ACRYGT	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	23, 708
Alw21I	GWGCWC	2 cut(s)	1240, 1290
Alw26I	GTCTC	2 cut(s)	1118, 1244
AlwI	GGATC	6 cut(s)	15, 36, 1813, 1826, 1841, 1854
AlwNI	CAGNNNCTG	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	2063
Aor13HI	TCCGGA	1 cut(s)	657
AoxI	GGCC	1 cut(s)	1265
ApeKI	GCWGC	6 cut(s)	265, 740, 838, 1418, 1729, 1754
ApoI	RAATTY	8 cut(s)	78, 182, 650, 798, 968, 1111, 1181, 1476
ArsI	GACNNNNNNTTYG	2 cut(s)	1873, 1905
AspS9I	GGNCC	3 cut(s)	538, 1580, 2057
AsuHPI	GGTGA	7 cut(s)	85, 601, 917, 929, 1436, 1456, 1474
AsuII	TTCGAA	1 cut(s)	1799
AsuNHI	GCTAGC	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	2063
AvaII	GGWCC	3 cut(s)	538, 1580, 2057
BaeGI	GKGCMC	1 cut(s)	619
BamHI	GGATCC	2 cut(s)	1818, 1846
BanII	GRGCYC	2 cut(s)	559, 1350
BarI	GAAGNNNNNNTAC	2 cut(s)	1202, 1234
BauI	CACGAG	2 cut(s)	1056, 1548
BbsI	GAAGAC	4 cut(s)	1090, 1548, 1886, 2005
Bbv12I	GWGCWC	2 cut(s)	1240, 1290
BbvI	GCAGC	6 cut(s)	252, 727, 850, 1405, 1741, 1741
BccI	CCATC	6 cut(s)	980, 1130, 1200, 1385, 1892, 1899
BceAI	ACGGC	2 cut(s)	1089, 1601
BciT130I	CCWGG	2 cut(s)	25, 710
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	1118, 1244
BfaI	CTAG	8 cut(s)	431, 1050, 1233, 1254, 1670, 1854, 2054, 2104
BfmI	CTRYAG	1 cut(s)	266
BfrI	CTTAAG	2 cut(s)	409, 1004
BglII	AGATCT	1 cut(s)	1856
BisI	GCNGC	6 cut(s)	266, 741, 839, 1419, 1730, 1755
BlsI	GCNGC	6 cut(s)	267, 742, 840, 1420, 1731, 1756
Bme1390I	CCNGG	2 cut(s)	25, 710
Bme18I	GGWCC	3 cut(s)	538, 1580, 2057
BmeT110I	CYCGRG	1 cut(s)	2063
BmgT120I	GGNCC	3 cut(s)	538, 1580, 2057
BmiI	GGNNCC	4 cut(s)	949, 1582, 1820, 1848
BmrFI	CCNGG	2 cut(s)	25, 710
BmsI	GCATC	6 cut(s)	678, 1072, 1337, 1561, 1603, 1741
BmtI	GCTAGC	1 cut(s)	1053
BpiI	GAAGAC	4 cut(s)	1090, 1548, 1886, 2005
BplI	GAGNNNNNCTC	4 cut(s)	1894, 1926, 2057, 2089
BpmI	CTGGAG	1 cut(s)	1509
Bpu10I	CCTNAGC	3 cut(s)	50, 913, 1503
Bpu14I	TTCGAA	1 cut(s)	1799
BpuEI	CTTGAG	2 cut(s)	450, 973
Bsa29I	ATCGAT	2 cut(s)	31, 672
BsaAI	YACGTR	1 cut(s)	221
BsaJI	CCNNGG	5 cut(s)	24, 709, 1350, 1486, 2064
BsaWI	WCCGGW	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	4 cut(s)	809, 1589, 1766, 2054
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	854
BseAI	TCCGGA	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	25, 710
BseCI	ATCGAT	2 cut(s)	31, 672
BseDI	CCNNGG	5 cut(s)	24, 709, 1350, 1486, 2064
BseGI	GGATG	5 cut(s)	478, 1141, 1331, 1437, 1930
BseLI	CCNNNNNNNGG	4 cut(s)	809, 1589, 1766, 2054
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	2 cut(s)	927, 1494
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	3 cut(s)	542, 1262, 1979
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	6 cut(s)	252, 727, 850, 1405, 1741, 1741
BsgI	GTGCAG	2 cut(s)	735, 1740
BshFI	GGCC	1 cut(s)	1267
BshVI	ATCGAT	2 cut(s)	31, 672
BsiHKAI	GWGCWC	2 cut(s)	1240, 1290
BsiHKCI	CYCGRG	1 cut(s)	2063
BsiSI	CCGG	2 cut(s)	658, 1268
BslFI	GGGAC	1 cut(s)	1566
BslI	CCNNNNNNNGG	4 cut(s)	809, 1589, 1766, 2054
BsmAI	GTCTC	2 cut(s)	1118, 1244
BsmFI	GGGAC	1 cut(s)	1566
BsmI	GAATGC	1 cut(s)	1916
BsnI	GGCC	1 cut(s)	1267
BsoBI	CYCGRG	1 cut(s)	2063
Bsp119I	TTCGAA	1 cut(s)	1799
Bsp1286I	GDGCHC	5 cut(s)	559, 619, 1240, 1290, 1350
Bsp13I	TCCGGA	1 cut(s)	657
Bsp1407I	TGTACA	2 cut(s)	1060, 2032
Bsp143I	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
BspACI	CCGC	6 cut(s)	137, 491, 541, 794, 1121, 1816
BspANI	GGCC	1 cut(s)	1267
BspCNI	CTCAG	2 cut(s)	926, 1495
BspDI	ATCGAT	2 cut(s)	31, 672
BspEI	TCCGGA	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	4 cut(s)	949, 1582, 1820, 1848
BspMAI	CTGCAG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	1053
BspPI	GGATC	6 cut(s)	15, 36, 1813, 1826, 1841, 1854
BspQI	GCTCTTC	2 cut(s)	375, 915
BspT104I	TTCGAA	1 cut(s)	1799
BspTI	CTTAAG	2 cut(s)	409, 1004
BsrDI	GCAATG	1 cut(s)	854
BsrGI	TGTACA	2 cut(s)	1060, 2032
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	5 cut(s)	24, 709, 1350, 1486, 2064
BssMI	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
BssSI	CACGAG	2 cut(s)	1056, 1548
BssT1I	CCWWGG	2 cut(s)	1350, 1486
Bst2BI	CACGAG	2 cut(s)	1056, 1548
Bst2UI	CCWGG	2 cut(s)	25, 710
Bst4CI	ACNGT	5 cut(s)	250, 1014, 1229, 1285, 2029
Bst6I	CTCTTC	3 cut(s)	375, 915, 2080
BstAFI	CTTAAG	2 cut(s)	409, 1004
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstAUI	TGTACA	2 cut(s)	1060, 2032
BstBAI	YACGTR	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	1799
BstC8I	GCNNGC	3 cut(s)	894, 1051, 1564
BstDEI	CTNAG	4 cut(s)	50, 913, 1503, 1601
BstENI	CCTNNNNNAGG	1 cut(s)	2052
BstF5I	GGATG	5 cut(s)	478, 1141, 1331, 1437, 1930
BstKTI	GATC	8 cut(s)	23, 31, 67, 131, 676, 1821, 1849, 1859
BstMAI	GTCTC	2 cut(s)	1118, 1244
BstMBI	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
BstMWI	GCNNNNNNNGC	4 cut(s)	540, 554, 1559, 1763
BstNI	CCWGG	2 cut(s)	25, 710
BstNSI	RCATGY	2 cut(s)	311, 325
BstSCI	CCNGG	2 cut(s)	23, 708
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	619
BstSNI	TACGTA	1 cut(s)	221
BstV1I	GCAGC	6 cut(s)	252, 727, 850, 1405, 1741, 1741
BstV2I	GAAGAC	4 cut(s)	1090, 1548, 1886, 2005
BstX2I	RGATCY	4 cut(s)	20, 1818, 1846, 1856
BstYI	RGATCY	4 cut(s)	20, 1818, 1846, 1856
Bsu15I	ATCGAT	2 cut(s)	31, 672
BsuRI	GGCC	1 cut(s)	1267
BsuTUI	ATCGAT	2 cut(s)	31, 672
BtsCI	GGATG	5 cut(s)	478, 1141, 1331, 1437, 1930
BtsI	GCAGTG	2 cut(s)	543, 671
BtsIMutI	CAGTG	7 cut(s)	543, 619, 671, 784, 1099, 1290, 1383
Cac8I	GCNNGC	3 cut(s)	894, 1051, 1564
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	3 cut(s)	538, 1580, 2057
ClaI	ATCGAT	2 cut(s)	31, 672
CseI	GACGC	2 cut(s)	571, 1142
Csp6I	GTAC	6 cut(s)	218, 551, 1061, 1219, 1457, 2033
CviAII	CATG	8 cut(s)	164, 205, 308, 322, 524, 535, 1026, 1736
CviQI	GTAC	6 cut(s)	218, 551, 1061, 1219, 1457, 2033
DdeI	CTNAG	4 cut(s)	50, 913, 1503, 1601
DpnI	GATC	8 cut(s)	22, 30, 66, 130, 675, 1820, 1848, 1858
DpnII	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
EaeI	YGGCCR	1 cut(s)	1265
Eam1104I	CTCTTC	3 cut(s)	375, 915, 2080
EarI	CTCTTC	3 cut(s)	375, 915, 2080
EciI	GGCGGA	1 cut(s)	1136
Eco105I	TACGTA	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	1350, 1486
Eco24I	GRGCYC	2 cut(s)	559, 1350
Eco47I	GGWCC	3 cut(s)	538, 1580, 2057
Eco57I	CTGAAG	6 cut(s)	242, 921, 1229, 1407, 1560, 1731
Eco88I	CYCGRG	1 cut(s)	2063
EcoNI	CCTNNNNNAGG	1 cut(s)	2052
EcoO109I	RGGNCCY	2 cut(s)	1580, 2057
EcoRI	GAATTC	2 cut(s)	798, 1181
EcoRII	CCWGG	2 cut(s)	23, 708
EcoT14I	CCWWGG	2 cut(s)	1350, 1486
EcoT22I	ATGCAT	1 cut(s)	1087
EcoT38I	GRGCYC	2 cut(s)	559, 1350
ErhI	CCWWGG	2 cut(s)	1350, 1486
FaeI	CATG	8 cut(s)	167, 208, 311, 325, 527, 538, 1029, 1739
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 912, 944
FaqI	GGGAC	1 cut(s)	1566
FatI	CATG	8 cut(s)	163, 204, 307, 321, 523, 534, 1025, 1735
FauI	CCCGC	1 cut(s)	787
FauNDI	CATATG	2 cut(s)	339, 1867
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	2 cut(s)	994, 1492
Fnu4HI	GCNGC	6 cut(s)	266, 741, 839, 1419, 1730, 1755
FokI	GGATG	5 cut(s)	485, 1148, 1318, 1444, 1937
FriOI	GRGCYC	2 cut(s)	559, 1350
Fsp4HI	GCNGC	6 cut(s)	266, 741, 839, 1419, 1730, 1755
FspBI	CTAG	8 cut(s)	431, 1050, 1233, 1254, 1670, 1854, 2054, 2104
GluI	GCNGC	6 cut(s)	266, 741, 839, 1419, 1730, 1755
GsuI	CTGGAG	1 cut(s)	1509
HaeIII	GGCC	1 cut(s)	1267
HapII	CCGG	2 cut(s)	658, 1268
HgaI	GACGC	2 cut(s)	571, 1142
Hin1II	CATG	8 cut(s)	167, 208, 311, 325, 527, 538, 1029, 1739
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	5 cut(s)	120, 894, 1001, 1586, 1887
HinfI	GANTC	9 cut(s)	33, 463, 590, 1214, 1406, 1544, 1688, 1909, 1931
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	658, 1268
HphI	GGTGA	7 cut(s)	85, 601, 917, 929, 1436, 1456, 1474
Hpy166II	GTNNAC	4 cut(s)	100, 995, 1061, 1493
Hpy188I	TCNGA	5 cut(s)	561, 628, 940, 1200, 1963
Hpy188III	TCNNGA	7 cut(s)	467, 524, 658, 803, 1037, 1371, 2063
Hpy8I	GTNNAC	4 cut(s)	100, 995, 1061, 1493
HpyAV	CCTTC	8 cut(s)	49, 415, 876, 1204, 1441, 1521, 2058, 2100
HpyCH4III	ACNGT	5 cut(s)	250, 1014, 1229, 1285, 2029
HpyCH4IV	ACGT	4 cut(s)	96, 220, 579, 1654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	540, 554, 1559, 1763
HpyF3I	CTNAG	4 cut(s)	50, 913, 1503, 1601
HpySE526I	ACGT	4 cut(s)	96, 220, 579, 1654
Hsp92II	CATG	8 cut(s)	167, 208, 311, 325, 527, 538, 1029, 1739
Kpn2I	TCCGGA	1 cut(s)	657
Ksp22I	TGATCA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
LguI	GCTCTTC	2 cut(s)	375, 915
LmnI	GCTCC	2 cut(s)	953, 1966
Lsp1109I	GCAGC	6 cut(s)	252, 727, 850, 1405, 1741, 1741
LweI	GCATC	6 cut(s)	678, 1072, 1337, 1561, 1603, 1741
MaeI	CTAG	8 cut(s)	431, 1050, 1233, 1254, 1670, 1854, 2054, 2104
MaeII	ACGT	4 cut(s)	96, 220, 579, 1654
MaeIII	GTNAC	4 cut(s)	607, 1279, 1655, 1806
MalI	GATC	8 cut(s)	22, 30, 66, 130, 675, 1820, 1848, 1858
MboI	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	4 cut(s)	20, 1818, 1846, 1856
MhlI	GDGCHC	5 cut(s)	559, 619, 1240, 1290, 1350
MlyI	GAGTC	3 cut(s)	457, 1538, 1903
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	1 cut(s)	1087
MroI	TCCGGA	1 cut(s)	657
MseI	TTAA	8 cut(s)	59, 99, 350, 372, 410, 567, 648, 1005
MslI	CAYNNNNRTG	1 cut(s)	1737
MspA1I	CMGCKG	3 cut(s)	70, 493, 1529
MspCI	CTTAAG	2 cut(s)	409, 1004
MspI	CCGG	2 cut(s)	658, 1268
MspR9I	CCNGG	2 cut(s)	25, 710
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	1916
MvaI	CCWGG	2 cut(s)	25, 710
MwoI	GCNNNNNNNGC	4 cut(s)	540, 554, 1559, 1763
NdeI	CATATG	2 cut(s)	339, 1867
NdeII	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
NheI	GCTAGC	1 cut(s)	1049
NlaIII	CATG	8 cut(s)	167, 208, 311, 325, 527, 538, 1029, 1739
NlaIV	GGNNCC	4 cut(s)	949, 1582, 1820, 1848
NmuCI	GTSAC	2 cut(s)	607, 1655
NsiI	ATGCAT	1 cut(s)	1087
NspI	RCATGY	2 cut(s)	311, 325
NspV	TTCGAA	1 cut(s)	1799
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	321
PciSI	GCTCTTC	2 cut(s)	375, 915
PctI	GAATGC	1 cut(s)	1916
PfeI	GAWTC	6 cut(s)	33, 590, 1214, 1406, 1688, 1931
PkrI	GCNGC	6 cut(s)	267, 742, 840, 1420, 1731, 1756
PleI	GAGTC	3 cut(s)	457, 1538, 1903
PpsI	GAGTC	3 cut(s)	457, 1538, 1903
Ppu21I	YACGTR	1 cut(s)	221
PpuMI	RGGWCCY	2 cut(s)	1580, 2057
PscI	ACATGT	1 cut(s)	321
Psp5II	RGGWCCY	2 cut(s)	1580, 2057
Psp6I	CCWGG	2 cut(s)	23, 708
PspGI	CCWGG	2 cut(s)	23, 708
PspN4I	GGNNCC	4 cut(s)	949, 1582, 1820, 1848
PspPI	GGNCC	3 cut(s)	538, 1580, 2057
PspPPI	RGGWCCY	2 cut(s)	1580, 2057
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	4 cut(s)	20, 1818, 1846, 1856
PvuII	CAGCTG	2 cut(s)	70, 1529
RsaI	GTAC	6 cut(s)	219, 552, 1062, 1220, 1458, 2034
RsaNI	GTAC	6 cut(s)	218, 551, 1061, 1219, 1457, 2033
RseI	CAYNNNNRTG	1 cut(s)	1737
SapI	GCTCTTC	2 cut(s)	375, 915
SaqAI	TTAA	8 cut(s)	59, 99, 350, 372, 410, 567, 648, 1005
SatI	GCNGC	6 cut(s)	266, 741, 839, 1419, 1730, 1755
Sau3AI	GATC	8 cut(s)	20, 28, 64, 128, 673, 1818, 1846, 1856
Sau96I	GGNCC	3 cut(s)	538, 1580, 2057
SchI	GAGTC	3 cut(s)	457, 1538, 1903
ScrFI	CCNGG	2 cut(s)	25, 710
SduI	GDGCHC	5 cut(s)	559, 619, 1240, 1290, 1350
SfaNI	GCATC	6 cut(s)	678, 1072, 1337, 1561, 1603, 1741
SfcI	CTRYAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	1799
SinI	GGWCC	3 cut(s)	538, 1580, 2057
SmiMI	CAYNNNNRTG	1 cut(s)	1737
SmlI	CTYRAG	4 cut(s)	409, 465, 952, 1004
SmoI	CTYRAG	4 cut(s)	409, 465, 952, 1004
SnaBI	TACGTA	1 cut(s)	221
SsiI	CCGC	6 cut(s)	137, 491, 541, 794, 1121, 1816
SspMI	CTAG	8 cut(s)	431, 1050, 1233, 1254, 1670, 1854, 2054, 2104
StyD4I	CCNGG	2 cut(s)	23, 708
StyI	CCWWGG	2 cut(s)	1350, 1486
TaaI	ACNGT	5 cut(s)	250, 1014, 1229, 1285, 2029
TaiI	ACGT	4 cut(s)	99, 223, 582, 1657
TaqI	TCGA	6 cut(s)	31, 42, 672, 1372, 1799, 2022
TatI	WGTACW	3 cut(s)	1060, 1456, 2032
TfiI	GAWTC	6 cut(s)	33, 590, 1214, 1406, 1688, 1931
Tru1I	TTAA	8 cut(s)	59, 99, 350, 372, 410, 567, 648, 1005
Tru9I	TTAA	8 cut(s)	59, 99, 350, 372, 410, 567, 648, 1005
TscAI	CASTG	7 cut(s)	550, 619, 671, 784, 1099, 1290, 1390
TseFI	GTSAC	2 cut(s)	607, 1655
TseI	GCWGC	6 cut(s)	265, 740, 838, 1418, 1729, 1754
Tsp45I	GTSAC	2 cut(s)	607, 1655
TspGWI	ACGGA	2 cut(s)	975, 1811
TspRI	CASTG	7 cut(s)	550, 619, 671, 784, 1099, 1290, 1390
Vha464I	CTTAAG	2 cut(s)	409, 1004
VpaK11BI	GGWCC	3 cut(s)	538, 1580, 2057
XagI	CCTNNNNNAGG	1 cut(s)	2052
XapI	RAATTY	8 cut(s)	78, 182, 650, 798, 968, 1111, 1181, 1476
XceI	RCATGY	2 cut(s)	311, 325
XmiI	GTMKAC	2 cut(s)	994, 1492
XspI	CTAG	8 cut(s)	431, 1050, 1233, 1254, 1670, 1854, 2054, 2104
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.