Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011144

Physical Location & Seq

Genomic Coordinates Reverse (-)

42153560 .. 42156259

Gene Structure 2700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTTTTTCTAATGCCGACTATGGTTCTAACTCATACGCTGCTTCTGCCCCATCCCTGCCCGACTCCCCTGAGCACCAAGAACAAGAATATTACAGCACCACCTTTTCAAATGATCCTCCTCCTCCTGCGGCCAGAAATTACTACTACGGGAACAGCAAGCCTTTCTCACAATACGGGCGTAGTTACGCCCGTAGTTACGGCCATAGTTACGCCCGTAGATACGAGGGCCCGTCTCCTTCTTCATATGGGGAATCGGGAGGGGATTTTCCACCCGGAACCGACCCGGCTGTGATTAGCAGCTTTCAGATGGTGGATAAGGACAGGAGTGGCTTCATTGATGACAATGAATTGCAACTAGCTCTTTCTTCTGGCTACCATAAGTTTAGCCTCAGGACCATTCGCTTGCTAATGTTTCTCTTCAAAAATCCCGACAATGATTATATTCTAAAACTCGGTCCTCAGGAATTTGCTGCACTCTGGAGTTGTCTTGGTGAATGGCGAGTAAGTGTAACATATATCCTGGTTGATGATTATTATTACAATGGCCTAGTAGAATCTTTTTATTGTGTAAGGAAACAGAAAAACAGCATGAGAGGGATTTGCCGCTATTTGGTTTTGTTTCTTTATTTCATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

213

Amino Acids

24.35

Weight (kDa)

5.79

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27480 AT2G27480
fragaria_vesca	FvH4_3g24940
malus_domestica	MD00G1075300.v1.1 MD03G1144700.v1.1 MD11G1164500.v1.1
prunus_persica	Prupe.6G130400_v2.0.a1 Prupe.6G130400_v2.0.a1
pyrus_communis	pycom11g13680
rosa_chinensis	RchiOBHm_Chr5g0044731
rosa_laevigata	RLG00000034294
rosa_multiflora	Rmu_sc0000228.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036300
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh5AG300500 Rh5BG307200 Rh5CG334200 Rh5DG317300
rosa_wichuraiana	Rw5G027800 Rw5G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 607
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	132, 202
AcsI	RAATTY	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	2 cut(s)	111, 424
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	303, 362
AluI	AGCT	2 cut(s)	303, 362
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	4 cut(s)	132, 202, 229, 547
ApaI	GGGCCC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	41, 300, 473
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	4 cut(s)	229, 230, 396, 458
AsuC2I	CCSGG	2 cut(s)	276, 287
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	396, 458
AxyI	CCTNAGG	2 cut(s)	392, 462
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	28, 312, 460
BccI	CCATC	2 cut(s)	61, 304
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	524
BcnI	CCSGG	2 cut(s)	276, 287
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	359, 551
BisI	GCNGC	5 cut(s)	42, 132, 301, 474, 607
BlsI	GCNGC	5 cut(s)	43, 133, 302, 475, 608
Bme1390I	CCNGG	3 cut(s)	276, 287, 524
Bme18I	GGWCC	2 cut(s)	396, 458
BmgT120I	GGNCC	4 cut(s)	229, 230, 396, 458
BmiI	GGNNCC	2 cut(s)	231, 280
BmrFI	CCNGG	3 cut(s)	276, 287, 524
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	72
BpuMI	CCSGG	2 cut(s)	276, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse21I	CCTNAGG	2 cut(s)	392, 462
BseBI	CCWGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	3 cut(s)	63, 406, 476
BseRI	GAGGAG	2 cut(s)	111, 114
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	28, 312, 460
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	134, 204, 231, 549
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	276, 287
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	134, 204, 231, 549
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	78, 233
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	131, 607
BspANI	GGCC	4 cut(s)	134, 204, 231, 549
BspCNI	CTCAG	3 cut(s)	64, 405, 475
BspLI	GGNNCC	2 cut(s)	231, 280
BspPI	GGATC	1 cut(s)	110
BssMI	GATC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	161, 407
BstDEI	CTNAG	3 cut(s)	72, 392, 462
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	274, 285, 522
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	28, 312, 460
Bsu36I	CCTNAGG	2 cut(s)	392, 462
BsuRI	GGCC	4 cut(s)	134, 204, 231, 549
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	161, 407
Cfr13I	GGNCC	4 cut(s)	229, 230, 396, 458
CviAII	CATG	1 cut(s)	592
DdeI	CTNAG	3 cut(s)	72, 392, 462
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	132, 202
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	396, 458
Eco81I	CCTNAGG	2 cut(s)	392, 462
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	595
FatI	CATG	1 cut(s)	591
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	42, 132, 301, 474, 607
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	5 cut(s)	42, 132, 301, 474, 607
FspBI	CTAG	2 cut(s)	359, 551
GluI	GCNGC	5 cut(s)	42, 132, 301, 474, 607
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	4 cut(s)	134, 204, 231, 549
HapII	CCGG	2 cut(s)	276, 287
Hin1II	CATG	1 cut(s)	595
HinfI	GANTC	3 cut(s)	65, 254, 557
HpaII	CCGG	2 cut(s)	276, 287
HphI	GGTGA	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	5 cut(s)	258, 394, 431, 464, 481
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	355, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	72, 392, 462
Hsp92II	CATG	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	115
Lsp1109I	GCAGC	3 cut(s)	28, 312, 460
MaeI	CTAG	2 cut(s)	359, 551
MaeIII	GTNAC	4 cut(s)	185, 197, 209, 511
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	234, 360, 412
MhlI	GDGCHC	2 cut(s)	78, 233
MluCI	AATT	3 cut(s)	139, 350, 467
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	129, 132, 135, 220, 254, 401, 471, 590
MspI	CCGG	2 cut(s)	276, 287
MspR9I	CCNGG	3 cut(s)	276, 287, 524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	2 cut(s)	276, 287
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	2 cut(s)	231, 280
PfeI	GAWTC	2 cut(s)	254, 557
PkrI	GCNGC	5 cut(s)	43, 133, 302, 475, 608
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	231, 280
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	4 cut(s)	229, 230, 396, 458
SatI	GCNGC	5 cut(s)	42, 132, 301, 474, 607
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	4 cut(s)	229, 230, 396, 458
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	276, 287, 524
SduI	GDGCHC	2 cut(s)	78, 233
SetI	ASST	3 cut(s)	107, 305, 364
SinI	GGWCC	2 cut(s)	396, 458
Sse9I	AATT	3 cut(s)	139, 350, 467
SsiI	CCGC	2 cut(s)	131, 607
SspI	AATATT	1 cut(s)	92
SspMI	CTAG	2 cut(s)	359, 551
StyD4I	CCNGG	3 cut(s)	274, 285, 522
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	3 cut(s)	139, 350, 467
TauI	GCSGC	2 cut(s)	134, 609
TfiI	GAWTC	2 cut(s)	254, 557
TseI	GCWGC	3 cut(s)	41, 300, 473
TspDTI	ATGAA	5 cut(s)	234, 325, 363, 622, 626
VpaK11BI	GGWCC	2 cut(s)	396, 458
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	2 cut(s)	359, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.