Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015974

Physical Location & Seq

Genomic Coordinates Reverse (-)

15235030 .. 15238146

Gene Structure 3117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGCTTCTGAGCACAGCTCCTGACCTCACCCTTTCCACTGTCACTCTAACCCACTCCTCCTCCTCCTCCTCCTCCTCTCTCCTCCCCCTCTTCCGCTCCCTCACTCTCTCCCCCACTCCCCACCGCCGATTCTCCTCCCCACCCATCATCTCCGCCCTCCAATTCCGCCGCCCTCACGCCCTCCCCGCCTCCGCCGCTCTCGTCCAACACCTCCCGCCCGAGCAGGACGACCAGGATTGGGATTCCAGCAATGTCGCCCAGAGCGACGCTTTCGACTTCGAGAGGTGCTTCGCCTCTACCGACCTCAAGCACCTCGCCTCGCCCAACCTCGAGGTTCGCGAGCTCGATGAGCTGCCGGAGCAGTGGCGGAGGTCCAAGCTCGCTTGGCTCTGTAAGGAGCTGCCGTCGCATAAGTCCGGGACTTTGATTCGGATTCTCAACGCCCAGAAGAAGTGGATGAGGCAAGAGGACGCCACCTATGTCGCCGTGCACTGTATGCGAATTCGCGAGAACGAAGCCGGATTCCGGGTGTATAAATGGATGATGCAGCACAAGTGGTACCGATTTGATTTTGCTCTTGCTACCAAGTTGGCGGATTACATGGGGAAAGAGAGGAAATTTGCGAAATGTAGGGAGATTTTTGATGATATAATTAAGCAGGGGCGTGTGCCTAGTGAGTCTACATTTCATATATTGGTTGTTGCATACCTTAGTGCTCCGGGTGAAGGTTGCTTGGAAGAAGCGTGTAGTGTTTACAATCGAATGATTCAGCTGGGAGGTTACCAGCCGCGGCTTAGCTTGCACAATTCTCTGTTTAAGGCTATTGTGAGCAAACCAGGGAGCTCTGCGAGACCTTACCTCAAACAGGCCGAGTTTATATTTCATAATTTGTTAACAACTGGACTTGAGATTCACAAGGACATTTACAGTGGCTTGATTTGGTTACATAGTTATCAGGATACTGTCGATACAGAGAGGATGGCATCGTTGAGGAAGGAGATGCAAGAAGCAGGGATTGAAGAGGGCAAAGAAGTGCTTGTGTCTATCTTGAGAGCGTGCTCAAAGACGGGGGATGTGGAGGAAGCAGAGAACACTTGGCTCAGACTTCTCCGTCTTAATGTAGGTCTTCCGTCACAGGCGTTTGTTTATAAGATGGAAGTGTATGCAAAGGTTGGAGAACCCAAGAAGTCTTTGGAGATATTCAGGGAGATGCAGGAGCACTTGGGTTCAGCCAATGTTGTGGCATATCATAAAGTCATAGAAATTGTCTGTAAAGCTAAAGAAATTGAACTTGCAGAATCCCTCATGGCAGATTTCATCAACACTGGTTTGAAGCCTTCCATGCCAGCTTATATAGATCTAATGAACATGTACTTCAACTTGAGCTTATATGACAAAGTGGAATCAGCCTTCTCCCAATGCCTTGAGATATGTAGACCTAGCAGAACGGTTTACTGTATATACTTGGATTCTTTGGTGAAAGTTCGTAATCTTGATAAAGCTGAGGAGATATTTGACTACATGCAGAGTAATGGGGCAATAGGTATTAATGCCCGTTCCTGCAATACCATATTAAGTGGATACTTGTCAGCTGGAGATGATTTCAAGGCAGAGAAAATATATGGTCTGATGTGTCAGAAGAAATATGATGTTGATCCTCCATTGATGGAAATAATCAACTCTTTCTTGAGTTTGAGAAAGAAACAGGTTAAGAGACATATAAGCATGACGCTGAGCAAAGAACAAAGAGAAATATTAGTAGGTCTACTGCTGGGTGGTTTGCAGATCGAATCAGATGACGACAGAAAGAATCACATGATCCGTTTTGAGTTCAGTGAGAATTCCAGCGCACATTCTGTTTTGAGGAGACATATATATGATCAATACCATGAATGGCTCCATCCTTCGTGCAAGCCCAGTGAGAATTCTGAGCACATACCATATAAATTTTCCAGCATCTCACATTCTTATTTTGGTTTCTATGCCGACCAGTTTTGGCCCAATGGCCGGCGGATGATTCCCAAACTAGTCCACCGATGGCTCTCACCATGTGTTCTTGCATACTGGTATATGTATGGGGGCTACAGGACTGCATCGGGAGACATATTGCTGAAAATAAAGGGAAGTGAGGAGGGTGTTCAGAAGATTGTCAGAACCTTGAAGGCAATGTCTCTGGAGTGCAAGGTGAAGAGGAAGGGGAGAGTGTTTTGGATAGGTTTCCTGGGAAGTAATTCTACACTGTTCTGGAAACTAACGGAACCTTACATTCTAGATGACTTGAAACATCTTCTAAAATCGGATGGGGAAAGCTCAGAGAACAATACAGTTGAAAATGAAAACATCAACTTCGCTAGTGGGTCTGACACCGATGAGAATGCCTCTGATAATAGTGATGATGATAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

802

Amino Acids

91.84

Weight (kDa)

6.81

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LAGLIDADG_2	PF03161	583 - 748	5e-51	LAGLIDADG DNA endonuclease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15820
fragaria_vesca	FvH4_2g06900
malus_domestica	MD10G1089000.v1.1
prunus_persica	Prupe.8G116000_v2.0.a1
pyrus_communis	pycom10g07190
rosa_chinensis	RchiOBHm_Chr6g0259211
rosa_laevigata	RLG00000014548
rosa_multiflora	Rmu_ssc0000050.1_g000094
rosa_roxburghii	Rroxscaffold_7G00206520
rosa_rugosa	Rorug05G0586000
rosa_samantha	Rh6AG102900 Rh6BG095200 Rh6CG092100 Rh6DG086100
rosa_wichuraiana	Rw6G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AasI	GACNNNNNNGTC	1 cut(s)	1110
AbsI	CCTCGAGG	1 cut(s)	329
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccBSI	CCGCTC	2 cut(s)	96, 197
AccI	GTMKAC	3 cut(s)	680, 1435, 1765
AccII	CGCG	3 cut(s)	339, 507, 790
AclWI	GGATC	2 cut(s)	1649, 1813
AcoI	YGGCCR	1 cut(s)	2005
AcsI	RAATTY	5 cut(s)	501, 617, 1840, 1924, 1946
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	2051
AfaI	GTAC	2 cut(s)	560, 1373
AfiI	CCNNNNNNNGG	5 cut(s)	238, 525, 725, 865, 2007
AflIII	ACRYGT	1 cut(s)	1368
AgsI	TTSAA	8 cut(s)	1019, 1289, 1333, 1378, 1606, 2161, 2281, 2330
AhlI	ACTAGT	1 cut(s)	2026
AjnI	CCWGG	3 cut(s)	231, 835, 2220
Alw21I	GWGCWC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
Alw26I	GTCTC	5 cut(s)	844, 1708, 1861, 2094, 2175
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	1649, 1813
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	218, 329
AoxI	GGCC	3 cut(s)	867, 1997, 2005
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	352, 400, 547
ApoI	RAATTY	5 cut(s)	501, 617, 1840, 1924, 1946
AseI	ATTAAT	1 cut(s)	1548
Asp700I	GAANNNNTTC	1 cut(s)	2230
Asp718I	GGTACC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	1850
AspS9I	GGNCC	2 cut(s)	372, 1998
AsuC2I	CCSGG	3 cut(s)	418, 527, 720
AsuHPI	GGTGA	5 cut(s)	19, 734, 1489, 2037, 2197
AvaI	CYCGRG	2 cut(s)	218, 329
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	558
BanII	GRGCYC	2 cut(s)	345, 845
BarI	GAAGNNNNNNTAC	2 cut(s)	2218, 2250
BbsI	GAAGAC	1 cut(s)	1118
Bbv12I	GWGCWC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
BbvCI	CCTCAGC	1 cut(s)	1503
BbvI	GCAGC	3 cut(s)	339, 387, 559
BccI	CCATC	7 cut(s)	152, 973, 1147, 1660, 1908, 2031, 2294
BceAI	ACGGC	2 cut(s)	388, 470
BcgI	CGANNNNNNTGC	2 cut(s)	2357, 2391
BciT130I	CCWGG	3 cut(s)	233, 837, 2222
BciVI	GTATCC	2 cut(s)	952, 1574
BclI	TGATCA	1 cut(s)	1879
BcnI	CCSGG	3 cut(s)	418, 527, 720
BcoDI	GTCTC	5 cut(s)	844, 1708, 1861, 2094, 2175
BcuI	ACTAGT	1 cut(s)	2026
BfaI	CTAG	5 cut(s)	672, 1440, 2027, 2270, 2352
BfmI	CTRYAG	1 cut(s)	2083
BfuI	GTATCC	2 cut(s)	952, 1574
BglII	AGATCT	1 cut(s)	1357
BisI	GCNGC	7 cut(s)	169, 195, 353, 401, 548, 788, 791
BlpI	GCTNAGC	2 cut(s)	794, 1733
BlsI	GCNGC	7 cut(s)	170, 196, 354, 402, 549, 789, 792
Bme1390I	CCNGG	6 cut(s)	233, 418, 527, 720, 837, 2222
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	2 cut(s)	218, 329
BmgT120I	GGNCC	2 cut(s)	372, 1998
BmiI	GGNNCC	3 cut(s)	560, 1898, 2259
BmrFI	CCNGG	6 cut(s)	233, 418, 527, 720, 837, 2222
BmrI	ACTGGG	1 cut(s)	1911
BmsI	GCATC	6 cut(s)	534, 990, 992, 1200, 1965, 2102
BmuI	ACTGGG	1 cut(s)	1911
BpiI	GAAGAC	1 cut(s)	1118
BplI	GAGNNNNNCTC	3 cut(s)	33, 2363, 2395
BpmI	CTGGAG	2 cut(s)	1614, 2195
Bpu10I	CCTNAGC	1 cut(s)	1503
Bpu1102I	GCTNAGC	2 cut(s)	794, 1733
BpuEI	CTTGAG	6 cut(s)	290, 926, 1069, 1402, 1445, 1708
BpuMI	CCSGG	3 cut(s)	418, 527, 720
BsaBI	GATNNNNATC	1 cut(s)	1653
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	3 cut(s)	788, 836, 2221
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 389, 419
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 525, 725, 865, 2007
Bse118I	RCCGGY	1 cut(s)	2007
Bse1I	ACTGG	5 cut(s)	904, 1330, 1917, 1990, 2069
Bse3DI	GCAATG	2 cut(s)	256, 2172
Bse8I	GATNNNNATC	1 cut(s)	1653
BseBI	CCWGG	3 cut(s)	233, 837, 2222
BseDI	CCNNGG	3 cut(s)	788, 836, 2221
BseGI	GGATG	7 cut(s)	462, 546, 984, 1078, 1900, 2019, 2305
BseJI	GATNNNNATC	1 cut(s)	1653
BseLI	CCNNNNNNNGG	5 cut(s)	238, 525, 725, 865, 2007
BseMI	GCAATG	2 cut(s)	256, 2172
BseMII	CTCAG	5 cut(s)	1114, 1494, 1724, 1920, 2325
BseNI	ACTGG	5 cut(s)	904, 1330, 1917, 1990, 2069
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	339, 387, 559
BseYI	CCCAGC	2 cut(s)	772, 1771
Bsh1236I	CGCG	3 cut(s)	339, 507, 790
BshFI	GGCC	3 cut(s)	869, 1999, 2007
BshNI	GGYRCC	1 cut(s)	558
BsiHKAI	GWGCWC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
BsiHKCI	CYCGRG	2 cut(s)	218, 329
BsiSI	CCGG	6 cut(s)	356, 417, 519, 526, 719, 2008
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	5 cut(s)	238, 525, 725, 865, 2007
BsmAI	GTCTC	5 cut(s)	844, 1708, 1861, 2094, 2175
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	2380
BsnI	GGCC	3 cut(s)	869, 1999, 2007
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	2 cut(s)	218, 329
Bsp1286I	GDGCHC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
Bsp143I	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
Bsp1720I	GCTNAGC	2 cut(s)	794, 1733
Bsp68I	TCGCGA	2 cut(s)	339, 507
BspANI	GGCC	3 cut(s)	869, 1999, 2007
BspCNI	CTCAG	5 cut(s)	1113, 1495, 1725, 1921, 2324
BspFNI	CGCG	3 cut(s)	339, 507, 790
BspLI	GGNNCC	3 cut(s)	560, 1898, 2259
BspPI	GGATC	2 cut(s)	1649, 1813
BspT107I	GGYRCC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	844
BsrBI	CCGCTC	2 cut(s)	96, 197
BsrDI	GCAATG	2 cut(s)	256, 2172
BsrFI	RCCGGY	1 cut(s)	2007
BsrI	ACTGG	5 cut(s)	904, 1330, 1917, 1990, 2069
BssAI	RCCGGY	1 cut(s)	2007
BssECI	CCNNGG	3 cut(s)	788, 836, 2221
BssMI	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	233, 837, 2222
Bst4CI	ACNGT	8 cut(s)	40, 494, 929, 964, 1450, 1457, 2241, 2326
Bst6I	CTCTTC	3 cut(s)	95, 1014, 2183
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	7 cut(s)	341, 381, 800, 1057, 1347, 1913, 2009
BstDEI	CTNAG	8 cut(s)	8, 710, 794, 1100, 1503, 1733, 1929, 2311
BstDSI	CCRYGG	1 cut(s)	788
BstEII	GGTNACC	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	863
BstF5I	GGATG	7 cut(s)	462, 546, 984, 1078, 1900, 2019, 2305
BstFNI	CGCG	3 cut(s)	339, 507, 790
BstHHI	GCGC	1 cut(s)	1850
BstKTI	GATC	5 cut(s)	1360, 1657, 1788, 1821, 1882
BstMAI	GTCTC	5 cut(s)	844, 1708, 1861, 2094, 2175
BstMBI	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 194, 349, 358, 385, 406, 496, 799, 1342
BstNI	CCWGG	3 cut(s)	233, 837, 2222
BstNSI	RCATGY	2 cut(s)	1372, 1525
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	6 cut(s)	231, 416, 525, 718, 835, 2220
BstSFI	CTRYAG	1 cut(s)	2083
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	3 cut(s)	339, 507, 790
BstV1I	GCAGC	3 cut(s)	339, 387, 559
BstV2I	GAAGAC	1 cut(s)	1118
BstX2I	RGATCY	1 cut(s)	1357
BstXI	CCANNNNNNTGG	1 cut(s)	1240
BstYI	RGATCY	1 cut(s)	1357
BsuI	GTATCC	2 cut(s)	952, 1574
BsuRI	GGCC	3 cut(s)	869, 1999, 2007
BtgI	CCRYGG	1 cut(s)	788
BtsCI	GGATG	7 cut(s)	462, 546, 984, 1078, 1900, 2019, 2305
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	8 cut(s)	36, 368, 490, 934, 1323, 1840, 1924, 2237
BtuMI	TCGCGA	2 cut(s)	339, 507
Cac8I	GCNNGC	7 cut(s)	341, 381, 800, 1057, 1347, 1913, 2009
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	1850
Cfr10I	RCCGGY	1 cut(s)	2007
Cfr13I	GGNCC	2 cut(s)	372, 1998
Cfr42I	CCGCGG	1 cut(s)	791
CseI	GACGC	3 cut(s)	275, 479, 1738
Csp6I	GTAC	2 cut(s)	559, 1372
CviAII	CATG	9 cut(s)	601, 1306, 1342, 1369, 1522, 1726, 1816, 1889, 2049
CviQI	GTAC	2 cut(s)	559, 1372
DdeI	CTNAG	8 cut(s)	8, 710, 794, 1100, 1503, 1733, 1929, 2311
DpnI	GATC	5 cut(s)	1359, 1656, 1787, 1820, 1881
DpnII	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
DraIII	CACNNNGTG	1 cut(s)	2051
DrdI	GACNNNNNNGTC	1 cut(s)	1110
DseDI	GACNNNNNNGTC	1 cut(s)	1110
EaeI	YGGCCR	1 cut(s)	2005
Eam1104I	CTCTTC	3 cut(s)	95, 1014, 2183
EarI	CTCTTC	3 cut(s)	95, 1014, 2183
EciI	GGCGGA	6 cut(s)	142, 155, 181, 382, 608, 2026
Ecl136II	GAGCTC	2 cut(s)	343, 843
Eco24I	GRGCYC	2 cut(s)	345, 845
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	372
Eco53kI	GAGCTC	2 cut(s)	343, 843
Eco88I	CYCGRG	2 cut(s)	218, 329
Eco91I	GGTNACC	1 cut(s)	779
EcoICRI	GAGCTC	2 cut(s)	343, 843
EcoNI	CCTNNNNNAGG	1 cut(s)	863
EcoO65I	GGTNACC	1 cut(s)	779
EcoRI	GAATTC	3 cut(s)	501, 1840, 1924
EcoRII	CCWGG	3 cut(s)	231, 835, 2220
EcoT38I	GRGCYC	2 cut(s)	345, 845
FaeI	CATG	9 cut(s)	604, 1309, 1345, 1372, 1525, 1729, 1819, 1892, 2052
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	9 cut(s)	600, 1305, 1341, 1368, 1521, 1725, 1815, 1888, 2048
FauI	CCCGC	2 cut(s)	193, 222
FbaI	TGATCA	1 cut(s)	1879
FblI	GTMKAC	3 cut(s)	680, 1435, 1765
Fnu4HI	GCNGC	7 cut(s)	169, 195, 353, 401, 548, 788, 791
FokI	GGATG	7 cut(s)	469, 553, 991, 1085, 1887, 2026, 2312
FriOI	GRGCYC	2 cut(s)	345, 845
Fsp4HI	GCNGC	7 cut(s)	169, 195, 353, 401, 548, 788, 791
FspBI	CTAG	5 cut(s)	672, 1440, 2027, 2270, 2352
GlaI	GCGC	1 cut(s)	1849
GluI	GCNGC	7 cut(s)	169, 195, 353, 401, 548, 788, 791
GsaI	CCCAGC	2 cut(s)	776, 1775
GsuI	CTGGAG	2 cut(s)	1614, 2195
HaeIII	GGCC	3 cut(s)	869, 1999, 2007
HapII	CCGG	6 cut(s)	356, 417, 519, 526, 719, 2008
HgaI	GACGC	3 cut(s)	275, 479, 1738
HhaI	GCGC	1 cut(s)	1850
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	9 cut(s)	604, 1309, 1345, 1372, 1525, 1729, 1819, 1892, 2052
Hin6I	GCGC	1 cut(s)	1848
HinP1I	GCGC	1 cut(s)	1848
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HpaI	GTTAAC	1 cut(s)	894
HpaII	CCGG	6 cut(s)	356, 417, 519, 526, 719, 2008
HphI	GGTGA	5 cut(s)	19, 734, 1489, 2037, 2197
Hpy166II	GTNNAC	8 cut(s)	490, 681, 754, 894, 1436, 1453, 1766, 2032
Hpy8I	GTNNAC	8 cut(s)	490, 681, 754, 894, 1436, 1453, 1766, 2032
Hpy99I	CGWCG	2 cut(s)	269, 409
HpyAV	CCTTC	7 cut(s)	719, 988, 1347, 1420, 1914, 2155, 2188
HpyCH4III	ACNGT	8 cut(s)	40, 494, 929, 964, 1450, 1457, 2241, 2326
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 194, 349, 358, 385, 406, 496, 799, 1342
HpyF3I	CTNAG	8 cut(s)	8, 710, 794, 1100, 1503, 1733, 1929, 2311
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	9 cut(s)	604, 1309, 1345, 1372, 1525, 1729, 1819, 1892, 2052
HspAI	GCGC	1 cut(s)	1848
KpnI	GGTACC	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	2007
KroNI	GCCGGC	1 cut(s)	2009
Ksp22I	TGATCA	1 cut(s)	1879
KspAI	GTTAAC	1 cut(s)	894
KspI	CCGCGG	1 cut(s)	791
Kzo9I	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
LmnI	GCTCC	8 cut(s)	22, 101, 358, 397, 721, 840, 1216, 1902
Lsp1109I	GCAGC	3 cut(s)	339, 387, 559
LweI	GCATC	6 cut(s)	534, 990, 992, 1200, 1965, 2102
MaeI	CTAG	5 cut(s)	672, 1440, 2027, 2270, 2352
MaeIII	GTNAC	4 cut(s)	40, 779, 942, 1131
MalI	GATC	5 cut(s)	1359, 1656, 1787, 1820, 1881
MbiI	CCGCTC	2 cut(s)	96, 197
MboI	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
MboII	GAAGA	9 cut(s)	82, 460, 749, 1031, 1118, 1651, 2155, 2200, 2279
MflI	RGATCY	1 cut(s)	1357
MhlI	GDGCHC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	2 cut(s)	229, 1153
MroNI	GCCGGC	1 cut(s)	2007
MroXI	GAANNNNTTC	1 cut(s)	2230
MseI	TTAA	8 cut(s)	654, 816, 893, 1116, 1548, 1574, 1710, 2407
MslI	CAYNNNNRTG	1 cut(s)	1875
MspA1I	CMGCKG	3 cut(s)	772, 790, 1592
MspI	CCGG	6 cut(s)	356, 417, 519, 526, 719, 2008
MspR9I	CCNGG	6 cut(s)	233, 418, 527, 720, 837, 2222
Mva1269I	GAATGC	1 cut(s)	2380
MvaI	CCWGG	3 cut(s)	233, 837, 2222
MvnI	CGCG	3 cut(s)	339, 507, 790
MwoI	GCNNNNNNNGC	9 cut(s)	185, 194, 349, 358, 385, 406, 496, 799, 1342
NaeI	GCCGGC	1 cut(s)	2009
NciI	CCSGG	3 cut(s)	418, 527, 720
NdeII	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
NgoMIV	GCCGGC	1 cut(s)	2007
NlaIII	CATG	9 cut(s)	604, 1309, 1345, 1372, 1525, 1729, 1819, 1892, 2052
NlaIV	GGNNCC	3 cut(s)	560, 1898, 2259
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	2 cut(s)	40, 1131
NruI	TCGCGA	2 cut(s)	339, 507
NspI	RCATGY	2 cut(s)	1372, 1525
PaeR7I	CTCGAG	1 cut(s)	329
PciI	ACATGT	1 cut(s)	1368
PcsI	WCGNNNNNNNCGW	3 cut(s)	261, 297, 336
PctI	GAATGC	1 cut(s)	2380
PdiI	GCCGGC	1 cut(s)	2009
PdmI	GAANNNNTTC	1 cut(s)	2230
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	7 cut(s)	170, 196, 354, 402, 549, 789, 792
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
PscI	ACATGT	1 cut(s)	1368
PshBI	ATTAAT	1 cut(s)	1548
PsiI	TTATAA	1 cut(s)	1149
Psp124BI	GAGCTC	2 cut(s)	345, 845
Psp6I	CCWGG	3 cut(s)	231, 835, 2220
PspEI	GGTNACC	1 cut(s)	779
PspFI	CCCAGC	2 cut(s)	772, 1771
PspGI	CCWGG	3 cut(s)	231, 835, 2220
PspN4I	GGNNCC	3 cut(s)	560, 1898, 2259
PspPI	GGNCC	2 cut(s)	372, 1998
PspXI	VCTCGAGB	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	1357
PvuII	CAGCTG	2 cut(s)	772, 1592
RruI	TCGCGA	2 cut(s)	339, 507
RsaI	GTAC	2 cut(s)	560, 1373
RsaNI	GTAC	2 cut(s)	559, 1372
RseI	CAYNNNNRTG	1 cut(s)	1875
SacI	GAGCTC	2 cut(s)	345, 845
SacII	CCGCGG	1 cut(s)	791
SaqAI	TTAA	8 cut(s)	654, 816, 893, 1116, 1548, 1574, 1710, 2407
SatI	GCNGC	7 cut(s)	169, 195, 353, 401, 548, 788, 791
Sau3AI	GATC	5 cut(s)	1357, 1654, 1785, 1818, 1879
Sau96I	GGNCC	2 cut(s)	372, 1998
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	6 cut(s)	233, 418, 527, 720, 837, 2222
SduI	GDGCHC	8 cut(s)	14, 345, 492, 718, 845, 1061, 1221, 1935
SfaNI	GCATC	6 cut(s)	534, 990, 992, 1200, 1965, 2102
SfcI	CTRYAG	1 cut(s)	2083
Sfr274I	CTCGAG	1 cut(s)	329
Sfr303I	CCGCGG	1 cut(s)	791
SgrBI	CCGCGG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	1875
SmlI	CTYRAG	7 cut(s)	305, 329, 905, 1048, 1381, 1424, 1687
SmoI	CTYRAG	7 cut(s)	305, 329, 905, 1048, 1381, 1424, 1687
SpeI	ACTAGT	1 cut(s)	2026
SspI	AATATT	1 cut(s)	1755
SspMI	CTAG	5 cut(s)	672, 1440, 2027, 2270, 2352
SstI	GAGCTC	2 cut(s)	345, 845
StyD4I	CCNGG	6 cut(s)	231, 416, 525, 718, 835, 2220
TaaI	ACNGT	8 cut(s)	40, 494, 929, 964, 1450, 1457, 2241, 2326
TaqI	TCGA	7 cut(s)	273, 279, 330, 345, 760, 966, 1788
TatI	WGTACW	1 cut(s)	1371
TauI	GCSGC	4 cut(s)	171, 197, 790, 793
Tru1I	TTAA	8 cut(s)	654, 816, 893, 1116, 1548, 1574, 1710, 2407
Tru9I	TTAA	8 cut(s)	654, 816, 893, 1116, 1548, 1574, 1710, 2407
TscAI	CASTG	8 cut(s)	43, 368, 497, 934, 1330, 1840, 1924, 2244
TseFI	GTSAC	2 cut(s)	40, 1131
TseI	GCWGC	3 cut(s)	352, 400, 547
Tsp45I	GTSAC	2 cut(s)	40, 1131
TspDTI	ATGAA	6 cut(s)	677, 872, 1306, 1379, 1905, 2349
TspGWI	ACGGA	4 cut(s)	1100, 1119, 1811, 2270
TspRI	CASTG	8 cut(s)	43, 368, 497, 934, 1330, 1840, 1924, 2244
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	1548
XagI	CCTNNNNNAGG	1 cut(s)	863
XapI	RAATTY	5 cut(s)	501, 617, 1840, 1924, 1946
XbaI	TCTAGA	1 cut(s)	2269
XceI	RCATGY	2 cut(s)	1372, 1525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	3 cut(s)	680, 1435, 1765
XmnI	GAANNNNTTC	1 cut(s)	2230
XspI	CTAG	5 cut(s)	672, 1440, 2027, 2270, 2352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.