Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015974

Physical Location & Seq

Genomic Coordinates Reverse (-)

14945585 .. 14948715

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGCTTCTGAGCACAGCTCCTGACCTCACCCTTTCCACTGTCACTCTAACGCACTCCTCCTCCTCCTCTCCCCTCCCCCTCTTCCGCTCCCTCACTCTCTCCCCCACTCCCCACAGCCGATTCTCCTCCCCACCCATCATCTCCGCCCTCCAATTCCGCCGCCCTCACGCCCTCCCGGCCTCCGCCGCTCTCGTCCAACACCTCCCGCCCGACCAGGACGACCAGGATTGGGATTCCAGCAATGTCGCCCAGAGCGACGCTTTCGATTTCGAGAGGTGCTTCGCCTCCACCGACCTCAAGCACCTCGCCTCGCCCAACCTCGAGGTTCGCGAGCTCGATGAGCTGCCGGAGCAGTGGCGGAGGTCCAAGCTCGCTTGGCTTTGTAAGGAGCTTCCGTCGCATAAGTCCGGGACTTTGATTCGGATTCTCAACGCCCAGAAGAAGTGGATGAGGCAAGAGGACGCCACCTATGTCGCCGTGCATTGTATGCGAATTCGCGAGAACGATGCCGGATTCCGGGTGTATAAATGGATGATGCAACACAAGTGGTACCGATTTGATTTTGCTCTTGCTACCAAGTTGGCGGATTACATGGGGAAAGAGCGGAAATTTGCGAAATGTAGGGAGATTTTTGATGATATAATTAAGCAGGGGCGTGTGCCTAGTGAGTCTACATTTCATATATTGGTTGTTGCATACCTTAGTGCTCCGGGTGAAGGTTGCTTGGAAGAAGCGTGTAGTGTTTACAATCGAATGATTCAGCTCGGAGGTTACCAGCCGCGGCTTAGCTTGCACAATTCTCTGTTTAAGGCTATTGTGAGCAAACCTGGGAGCTCTGCGAGACCTTACCTCAAACAGGCTGAGTTTATATTTCATAATTTGTTAACAACTGGACTTGAGATTCACAAGGACATTTACAGTGGCTTGATTTGGTTACATAGTTATCAGGATACTGTCGATACAGAGAGGATGGCATCGTTGAGGAAGGAGATGCAAGAAGCAGGGATTGAAGAGGGCAAAGAAGTGCTTGTGTCTATCTTGAGAGCGTGCTCAAAGATGGGGGATGTGGAGGAAGCAGAGAACACTTGGCTCAGACTTCTCCGTCTTAATGTAGGTCTTCCGTCACAGGCGTTTGTTTATAAGATGGAAGTGTGTGCAAAGGTTGGAGAACCCAAGAAGTCTTTGGAGATATTCAGGGAGATGCAGGAGCACTTGGGTTCAGCCAATGTTGTGGCATATCATAAAGTCATAGAAATTGTCTGTAAAGCTAAAGAAATCGAACTTGCAGAATCCCTCATGGCAGATTTCATCAACACTGGTTTGAAGCCTTCCATGCCAGCTTATATAGATCTAATGAACATGTACTTCAACTTGAGCTTATATGACAAAGTGGAATCAGCCTTCTCCCAATGCCTTGAGATATGTAGACCTAGCAGAACGGTTTACTGTATATACTTGGATTCTTTGGTGAAAGTTCGTAATCTTGATAAAGCTGAGGAGATATTTGACTACATGCAGAGTAATGGGGCAATAGGTATTAATGCCCGTTCCTGCAATACCATATTAAGTGGATACTTGTCAGCTGGAGATGATTTCAAGGCAGAGAAAATATATGGTCTGATGTGTCAGAAGAAATATGATGTTGATCCTCCATTGATGGAAATAATCAACTCTTTCTTGAGTTTGAGAAAGAAACAGGTTAAGAGACATATAAGCATGACGCTGAGCAAAGAACAACGAGAGATATTAGTAGGTTTACTGCTGGGTGGTTTGCAGATCGAATCAGATGACGACAGAAAGAATCACATGATCCGTTTTGAGTTCAGTGAGAATTCTAGCGCACATTCTGTTTTGAGGGGACATGTATATGATCAATACCATGAATGGCTCCATCCTTCGTGCAAGCCCAGTGAGAATACTGAGCACATACCATATAAATTTTCCAGCATCTCACATTCTTATTTTGGTTTCTATGCCGACCAGTTTTGGCCCAATGGCCGGCGGATGATTCCCAAACTAGTCCACCGATGGCTCTCACCATGTGTTCTTGCATACTGGTATATGTATGGGGGCTACAGGACTGCATCGGGAGACATATTGCTGAAAATAAAGGGAAGTGAGGAGGGTGTTCAGAAGATTGTCAGAACCTTGAAGGCAATGTCTCTGGAGTGCAAGGTGAAGAGGAAGGGGAGAGTGTTTTGGATAGGTTTCCTGGGAAGTAATTCTACACTGTTCTGGAAACTAACGGAACCTTACATTCTCGATGACTTGAAACATCTTCTAAAATCGGATGGGGAAAGCTCAGAGAACAATACACTGAATACAGTTGAAAATGAAAACATCAACTTCGCTAGTGGGTCTGAGACTGATGAGAATGCCTCTGATAATAGTGATGATGATAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

802

Amino Acids

91.68

Weight (kDa)

6.6

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	343 - 463	4.3e-06	Pentacotripeptide-repeat region of PRORP
LAGLIDADG_2	PF03161	580 - 745	1e-50	LAGLIDADG DNA endonuclease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15820
fragaria_vesca	FvH4_2g06900
malus_domestica	MD10G1089000.v1.1
prunus_persica	Prupe.8G116000_v2.0.a1
pyrus_communis	pycom10g07190
rosa_chinensis	RchiOBHm_Chr6g0259211
rosa_laevigata	RLG00000014548
rosa_multiflora	Rmu_ssc0000050.1_g000094
rosa_roxburghii	Rroxscaffold_7G00206520
rosa_rugosa	Rorug05G0586000
rosa_samantha	Rh6AG102900 Rh6BG095200 Rh6CG092100 Rh6DG086100
rosa_wichuraiana	Rw6G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1140
AasI	GACNNNNNNGTC	1 cut(s)	1101
AbsI	CCTCGAGG	1 cut(s)	320
Acc65I	GGTACC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	549
AccBSI	CCGCTC	3 cut(s)	87, 188, 604
AccI	GTMKAC	2 cut(s)	671, 1426
AccII	CGCG	3 cut(s)	330, 498, 781
AclWI	GGATC	2 cut(s)	1640, 1804
AcoI	YGGCCR	1 cut(s)	1996
AcsI	RAATTY	4 cut(s)	492, 608, 1831, 1937
AcyI	GRCGYC	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	2042
AfaI	GTAC	2 cut(s)	551, 1364
AfiI	CCNNNNNNNGG	5 cut(s)	229, 516, 716, 856, 1998
AflIII	ACRYGT	2 cut(s)	1359, 1861
AgsI	TTSAA	7 cut(s)	1010, 1324, 1369, 1597, 2152, 2272, 2330
AhlI	ACTAGT	1 cut(s)	2017
AjnI	CCWGG	4 cut(s)	213, 222, 826, 2211
Alw21I	GWGCWC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
Alw26I	GTCTC	5 cut(s)	835, 1699, 2085, 2166, 2357
AlwI	GGATC	2 cut(s)	1640, 1804
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	3 cut(s)	177, 1988, 1996
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	4 cut(s)	492, 608, 1831, 1937
AseI	ATTAAT	1 cut(s)	1539
Asp700I	GAANNNNTTC	1 cut(s)	2221
Asp718I	GGTACC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	1841
AspS9I	GGNCC	2 cut(s)	363, 1989
AsuC2I	CCSGG	4 cut(s)	176, 409, 518, 711
AsuHPI	GGTGA	5 cut(s)	19, 725, 1480, 2028, 2188
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	336, 836
BarI	GAAGNNNNNNTAC	2 cut(s)	2209, 2241
BbsI	GAAGAC	1 cut(s)	1109
Bbv12I	GWGCWC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
BbvCI	CCTCAGC	1 cut(s)	1494
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	8 cut(s)	143, 964, 1051, 1138, 1651, 1899, 2022, 2285
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	4 cut(s)	215, 224, 828, 2213
BciVI	GTATCC	2 cut(s)	943, 1565
BclI	TGATCA	1 cut(s)	1870
BcnI	CCSGG	4 cut(s)	176, 409, 518, 711
BcoDI	GTCTC	5 cut(s)	835, 1699, 2085, 2166, 2357
BcuI	ACTAGT	1 cut(s)	2017
BfaI	CTAG	5 cut(s)	663, 1431, 1836, 2018, 2352
BfmI	CTRYAG	1 cut(s)	2074
BfuI	GTATCC	2 cut(s)	943, 1565
BglI	GCCNNNNNGGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	1348
BisI	GCNGC	5 cut(s)	160, 186, 344, 779, 782
BlpI	GCTNAGC	2 cut(s)	785, 1724
BlsI	GCNGC	5 cut(s)	161, 187, 345, 780, 783
Bme1390I	CCNGG	8 cut(s)	176, 215, 224, 409, 518, 711, 828, 2213
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	363, 1989
BmiI	GGNNCC	3 cut(s)	551, 1889, 2250
BmrFI	CCNGG	8 cut(s)	176, 215, 224, 409, 518, 711, 828, 2213
BmrI	ACTGGG	1 cut(s)	1902
BmsI	GCATC	7 cut(s)	496, 525, 981, 983, 1191, 1956, 2093
BmuI	ACTGGG	1 cut(s)	1902
BpiI	GAAGAC	1 cut(s)	1109
BplI	GAGNNNNNCTC	3 cut(s)	33, 2363, 2395
BpmI	CTGGAG	2 cut(s)	1605, 2186
Bpu10I	CCTNAGC	1 cut(s)	1494
Bpu1102I	GCTNAGC	2 cut(s)	785, 1724
BpuEI	CTTGAG	6 cut(s)	281, 917, 1060, 1393, 1436, 1699
BpuMI	CCSGG	4 cut(s)	176, 409, 518, 711
BsaBI	GATNNNNATC	1 cut(s)	1644
BsaHI	GRCGYC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	779, 827, 2212
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 380, 410
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 516, 716, 856, 1998
Bse118I	RCCGGY	1 cut(s)	1998
Bse1I	ACTGG	5 cut(s)	895, 1321, 1908, 1981, 2060
Bse3DI	GCAATG	2 cut(s)	247, 2163
Bse8I	GATNNNNATC	1 cut(s)	1644
BseBI	CCWGG	4 cut(s)	215, 224, 828, 2213
BseDI	CCNNGG	3 cut(s)	779, 827, 2212
BseGI	GGATG	7 cut(s)	453, 537, 975, 1069, 1891, 2010, 2296
BseJI	GATNNNNATC	1 cut(s)	1644
BseLI	CCNNNNNNNGG	5 cut(s)	229, 516, 716, 856, 1998
BseMI	GCAATG	2 cut(s)	247, 2163
BseMII	CTCAG	7 cut(s)	852, 1105, 1485, 1715, 1911, 2316, 2352
BseNI	ACTGG	5 cut(s)	895, 1321, 1908, 1981, 2060
BseRI	GAGGAG	7 cut(s)	46, 49, 52, 55, 115, 1511, 2135
BseXI	GCAGC	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	1762
Bsh1236I	CGCG	3 cut(s)	330, 498, 781
BshFI	GGCC	3 cut(s)	179, 1990, 1998
BshNI	GGYRCC	1 cut(s)	549
BsiHKAI	GWGCWC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	7 cut(s)	176, 347, 408, 510, 517, 710, 1999
BslFI	GGGAC	2 cut(s)	424, 1872
BslI	CCNNNNNNNGG	5 cut(s)	229, 516, 716, 856, 1998
BsmAI	GTCTC	5 cut(s)	835, 1699, 2085, 2166, 2357
BsmFI	GGGAC	2 cut(s)	424, 1872
BsmI	GAATGC	1 cut(s)	2380
BsnI	GGCC	3 cut(s)	179, 1990, 1998
Bso31I	GGTCTC	1 cut(s)	835
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
Bsp143I	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
Bsp1720I	GCTNAGC	2 cut(s)	785, 1724
Bsp68I	TCGCGA	2 cut(s)	330, 498
BspANI	GGCC	3 cut(s)	179, 1990, 1998
BspCNI	CTCAG	7 cut(s)	853, 1104, 1486, 1716, 1912, 2315, 2353
BspFNI	CGCG	3 cut(s)	330, 498, 781
BspLI	GGNNCC	3 cut(s)	551, 1889, 2250
BspPI	GGATC	2 cut(s)	1640, 1804
BspT107I	GGYRCC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	835
BsrBI	CCGCTC	3 cut(s)	87, 188, 604
BsrDI	GCAATG	2 cut(s)	247, 2163
BsrFI	RCCGGY	1 cut(s)	1998
BsrI	ACTGG	5 cut(s)	895, 1321, 1908, 1981, 2060
BssAI	RCCGGY	1 cut(s)	1998
BssECI	CCNNGG	3 cut(s)	779, 827, 2212
BssMI	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
BssNI	GRCGYC	1 cut(s)	462
Bst2UI	CCWGG	4 cut(s)	215, 224, 828, 2213
Bst4CI	ACNGT	7 cut(s)	40, 920, 955, 1441, 1448, 2232, 2326
Bst6I	CTCTTC	3 cut(s)	86, 1005, 2174
BstACI	GRCGYC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	7 cut(s)	332, 372, 791, 1048, 1338, 1904, 2000
BstDSI	CCRYGG	1 cut(s)	779
BstEII	GGTNACC	1 cut(s)	770
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstF5I	GGATG	7 cut(s)	453, 537, 975, 1069, 1891, 2010, 2296
BstFNI	CGCG	3 cut(s)	330, 498, 781
BstHHI	GCGC	1 cut(s)	1841
BstKTI	GATC	5 cut(s)	1351, 1648, 1779, 1812, 1873
BstMAI	GTCTC	5 cut(s)	835, 1699, 2085, 2166, 2357
BstMBI	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
BstMWI	GCNNNNNNNGC	9 cut(s)	176, 185, 340, 349, 376, 397, 487, 790, 1333
BstNI	CCWGG	4 cut(s)	215, 224, 828, 2213
BstNSI	RCATGY	3 cut(s)	1363, 1516, 1865
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	8 cut(s)	174, 213, 222, 407, 516, 709, 826, 2211
BstSFI	CTRYAG	1 cut(s)	2074
BstUI	CGCG	3 cut(s)	330, 498, 781
BstV1I	GCAGC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	1 cut(s)	1348
BstXI	CCANNNNNNTGG	1 cut(s)	1231
BstYI	RGATCY	1 cut(s)	1348
BsuI	GTATCC	2 cut(s)	943, 1565
BsuRI	GGCC	3 cut(s)	179, 1990, 1998
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	7 cut(s)	453, 537, 975, 1069, 1891, 2010, 2296
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	8 cut(s)	36, 359, 925, 1314, 1831, 1915, 2228, 2315
BtuMI	TCGCGA	2 cut(s)	330, 498
Cac8I	GCNNGC	7 cut(s)	332, 372, 791, 1048, 1338, 1904, 2000
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	1841
Cfr10I	RCCGGY	1 cut(s)	1998
Cfr13I	GGNCC	2 cut(s)	363, 1989
Cfr42I	CCGCGG	1 cut(s)	782
CseI	GACGC	3 cut(s)	266, 470, 1729
Csp6I	GTAC	2 cut(s)	550, 1363
CspCI	CAANNNNNGTGG	2 cut(s)	527, 562
CviQI	GTAC	2 cut(s)	550, 1363
DpnI	GATC	5 cut(s)	1350, 1647, 1778, 1811, 1872
DpnII	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
DraIII	CACNNNGTG	1 cut(s)	2042
DrdI	GACNNNNNNGTC	1 cut(s)	1101
DseDI	GACNNNNNNGTC	1 cut(s)	1101
EaeI	YGGCCR	1 cut(s)	1996
Eam1104I	CTCTTC	3 cut(s)	86, 1005, 2174
EarI	CTCTTC	3 cut(s)	86, 1005, 2174
EciI	GGCGGA	6 cut(s)	133, 146, 172, 373, 599, 2017
Ecl136II	GAGCTC	2 cut(s)	334, 834
Eco24I	GRGCYC	2 cut(s)	336, 836
Eco31I	GGTCTC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	363
Eco53kI	GAGCTC	2 cut(s)	334, 834
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	770
EcoICRI	GAGCTC	2 cut(s)	334, 834
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	770
EcoRI	GAATTC	2 cut(s)	492, 1831
EcoRII	CCWGG	4 cut(s)	213, 222, 826, 2211
EcoT38I	GRGCYC	2 cut(s)	336, 836
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FaqI	GGGAC	2 cut(s)	424, 1872
FauI	CCCGC	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	1870
FblI	GTMKAC	2 cut(s)	671, 1426
Fnu4HI	GCNGC	5 cut(s)	160, 186, 344, 779, 782
FokI	GGATG	7 cut(s)	460, 544, 982, 1076, 1878, 2017, 2303
FriOI	GRGCYC	2 cut(s)	336, 836
Fsp4HI	GCNGC	5 cut(s)	160, 186, 344, 779, 782
FspBI	CTAG	5 cut(s)	663, 1431, 1836, 2018, 2352
GlaI	GCGC	1 cut(s)	1840
GluI	GCNGC	5 cut(s)	160, 186, 344, 779, 782
GsaI	CCCAGC	1 cut(s)	1766
GsuI	CTGGAG	2 cut(s)	1605, 2186
HaeIII	GGCC	3 cut(s)	179, 1990, 1998
HapII	CCGG	7 cut(s)	176, 347, 408, 510, 517, 710, 1999
HgaI	GACGC	3 cut(s)	266, 470, 1729
HhaI	GCGC	1 cut(s)	1841
Hin1I	GRCGYC	1 cut(s)	462
Hin6I	GCGC	1 cut(s)	1839
HinP1I	GCGC	1 cut(s)	1839
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HpaI	GTTAAC	1 cut(s)	885
HpaII	CCGG	7 cut(s)	176, 347, 408, 510, 517, 710, 1999
HphI	GGTGA	5 cut(s)	19, 725, 1480, 2028, 2188
Hpy166II	GTNNAC	7 cut(s)	672, 745, 885, 1427, 1444, 1757, 2023
Hpy8I	GTNNAC	7 cut(s)	672, 745, 885, 1427, 1444, 1757, 2023
Hpy99I	CGWCG	2 cut(s)	260, 400
HpyAV	CCTTC	7 cut(s)	710, 979, 1338, 1411, 1905, 2146, 2179
HpyCH4III	ACNGT	7 cut(s)	40, 920, 955, 1441, 1448, 2232, 2326
HpyF10VI	GCNNNNNNNGC	9 cut(s)	176, 185, 340, 349, 376, 397, 487, 790, 1333
Hsp92I	GRCGYC	1 cut(s)	462
HspAI	GCGC	1 cut(s)	1839
KpnI	GGTACC	1 cut(s)	553
KroI	GCCGGC	1 cut(s)	1998
KroNI	GCCGGC	1 cut(s)	2000
Ksp22I	TGATCA	1 cut(s)	1870
KspAI	GTTAAC	1 cut(s)	885
KspI	CCGCGG	1 cut(s)	782
Kzo9I	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
LmnI	GCTCC	8 cut(s)	22, 92, 349, 388, 712, 831, 1207, 1893
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	7 cut(s)	496, 525, 981, 983, 1191, 1956, 2093
MaeI	CTAG	5 cut(s)	663, 1431, 1836, 2018, 2352
MaeIII	GTNAC	4 cut(s)	40, 770, 933, 1122
MalI	GATC	5 cut(s)	1350, 1647, 1778, 1811, 1872
MbiI	CCGCTC	3 cut(s)	87, 188, 604
MboI	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
MboII	GAAGA	9 cut(s)	73, 451, 740, 1022, 1109, 1642, 2146, 2191, 2270
MflI	RGATCY	1 cut(s)	1348
MhlI	GDGCHC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	2 cut(s)	220, 1144
MroNI	GCCGGC	1 cut(s)	1998
MroXI	GAANNNNTTC	1 cut(s)	2221
MseI	TTAA	8 cut(s)	645, 807, 884, 1107, 1539, 1565, 1701, 2407
MslI	CAYNNNNRTG	1 cut(s)	1866
MspA1I	CMGCKG	2 cut(s)	781, 1583
MspI	CCGG	7 cut(s)	176, 347, 408, 510, 517, 710, 1999
MspR9I	CCNGG	8 cut(s)	176, 215, 224, 409, 518, 711, 828, 2213
Mva1269I	GAATGC	1 cut(s)	2380
MvaI	CCWGG	4 cut(s)	215, 224, 828, 2213
MvnI	CGCG	3 cut(s)	330, 498, 781
MwoI	GCNNNNNNNGC	9 cut(s)	176, 185, 340, 349, 376, 397, 487, 790, 1333
NaeI	GCCGGC	1 cut(s)	2000
NciI	CCSGG	4 cut(s)	176, 409, 518, 711
NdeII	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
NgoMIV	GCCGGC	1 cut(s)	1998
NlaIV	GGNNCC	3 cut(s)	551, 1889, 2250
NmuCI	GTSAC	2 cut(s)	40, 1122
NruI	TCGCGA	2 cut(s)	330, 498
NspI	RCATGY	3 cut(s)	1363, 1516, 1865
PaeR7I	CTCGAG	1 cut(s)	320
PciI	ACATGT	2 cut(s)	1359, 1861
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 288, 327
PctI	GAATGC	1 cut(s)	2380
PdiI	GCCGGC	1 cut(s)	2000
PdmI	GAANNNNTTC	1 cut(s)	2221
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	161, 187, 345, 780, 783
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PscI	ACATGT	2 cut(s)	1359, 1861
PshBI	ATTAAT	1 cut(s)	1539
PsiI	TTATAA	1 cut(s)	1140
Psp124BI	GAGCTC	2 cut(s)	336, 836
Psp6I	CCWGG	4 cut(s)	213, 222, 826, 2211
PspEI	GGTNACC	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	1762
PspGI	CCWGG	4 cut(s)	213, 222, 826, 2211
PspN4I	GGNNCC	3 cut(s)	551, 1889, 2250
PspPI	GGNCC	2 cut(s)	363, 1989
PspXI	VCTCGAGB	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	1348
PvuII	CAGCTG	1 cut(s)	1583
RruI	TCGCGA	2 cut(s)	330, 498
RsaI	GTAC	2 cut(s)	551, 1364
RsaNI	GTAC	2 cut(s)	550, 1363
RseI	CAYNNNNRTG	1 cut(s)	1866
SacI	GAGCTC	2 cut(s)	336, 836
SacII	CCGCGG	1 cut(s)	782
SaqAI	TTAA	8 cut(s)	645, 807, 884, 1107, 1539, 1565, 1701, 2407
SatI	GCNGC	5 cut(s)	160, 186, 344, 779, 782
Sau3AI	GATC	5 cut(s)	1348, 1645, 1776, 1809, 1870
Sau96I	GGNCC	2 cut(s)	363, 1989
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	8 cut(s)	176, 215, 224, 409, 518, 711, 828, 2213
SduI	GDGCHC	7 cut(s)	14, 336, 709, 836, 1052, 1212, 1926
SfaNI	GCATC	7 cut(s)	496, 525, 981, 983, 1191, 1956, 2093
SfcI	CTRYAG	1 cut(s)	2074
Sfr274I	CTCGAG	1 cut(s)	320
Sfr303I	CCGCGG	1 cut(s)	782
SgrBI	CCGCGG	1 cut(s)	782
SinI	GGWCC	1 cut(s)	363
SlaI	CTCGAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	1866
SmlI	CTYRAG	7 cut(s)	296, 320, 896, 1039, 1372, 1415, 1678
SmoI	CTYRAG	7 cut(s)	296, 320, 896, 1039, 1372, 1415, 1678
SpeI	ACTAGT	1 cut(s)	2017
SspMI	CTAG	5 cut(s)	663, 1431, 1836, 2018, 2352
SstI	GAGCTC	2 cut(s)	336, 836
StyD4I	CCNGG	8 cut(s)	174, 213, 222, 407, 516, 709, 826, 2211
TaaI	ACNGT	7 cut(s)	40, 920, 955, 1441, 1448, 2232, 2326
TaqI	TCGA	9 cut(s)	264, 270, 321, 336, 751, 957, 1278, 1779, 2262
TatI	WGTACW	1 cut(s)	1362
TauI	GCSGC	4 cut(s)	162, 188, 781, 784
Tru1I	TTAA	8 cut(s)	645, 807, 884, 1107, 1539, 1565, 1701, 2407
Tru9I	TTAA	8 cut(s)	645, 807, 884, 1107, 1539, 1565, 1701, 2407
TscAI	CASTG	8 cut(s)	43, 359, 925, 1321, 1831, 1915, 2235, 2322
TseFI	GTSAC	2 cut(s)	40, 1122
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	2 cut(s)	40, 1122
TspDTI	ATGAA	6 cut(s)	668, 863, 1297, 1370, 1896, 2349
TspGWI	ACGGA	5 cut(s)	384, 1091, 1110, 1802, 2261
TspRI	CASTG	8 cut(s)	43, 359, 925, 1321, 1831, 1915, 2235, 2322
VpaK11BI	GGWCC	1 cut(s)	363
VspI	ATTAAT	1 cut(s)	1539
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	4 cut(s)	492, 608, 1831, 1937
XceI	RCATGY	3 cut(s)	1363, 1516, 1865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1180
XhoI	CTCGAG	1 cut(s)	320
XmiI	GTMKAC	2 cut(s)	671, 1426
XmnI	GAANNNNTTC	1 cut(s)	2221
XspI	CTAG	5 cut(s)	663, 1431, 1836, 2018, 2352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.