Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015974

Physical Location & Seq

Genomic Coordinates Reverse (-)

10067347 .. 10070511

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG086100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGCTTCTGAGCACAGCTCCTGACCTTTCCACTGTCACTCTAACCCACTCCTCCTCCTCCTCCTCTCCCCTCCCCCTCTTCCGCTCCCTCACTCTCTCCCCCACTCCCCACCGCCGATTCTCCTCCCCACCCATCATCTCCGCCCTCCAATTCCGCCGCCCTCACGCCCTCCCCGCCTCCACCGCTCTCTTCCAACACCTCCCGCCCGAGCAGGACGACCAGGATTGGGATTCCAGCAATGTCGCCCAGAGCGACGCTTTCGATTTCGAGAGGTGCTTCGCCTCCACCGACCTCAAGCACCTCGCCTCGCCCAACCTCGAGGTTCGCGAGCTCGATGAGCTGCCGGAGCAGTGGCGGAGGTCCAAGCTCGCTTGGCTCTGTAAGGAGCTTCCGTTGCATAAGTCGGGGACTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGACGCCACCTATGTCGCCGTGCATTGTATGCGAATTCGCGAGAACGAAGCCGGATTCCGGGTGTATAAATGGATGATGCAACACAAGTGGTACCGATTTGATTTTGCTCTTGCTACCAAGTTGGCGGATTACATGGGGAAAGAGCGGAAATTTGCGAAATGTAGGGAGATTTTTGATGATATAATTAAGCAGGGGCGTGTGCCTAGTGAGTCTACATTTCATATATTGGTTGTTGCGTACCTTAGTGCTCCGGGTGAAGGTTGCTTGGAAGAAGCGTGTAGTGTTTACAATCGAATGATTCAGCTTGGAGGTTACCAGCCGCGGCTTAGCTTGCACAATTCTCTGTTTAAGGCTATTGTGAGCAAACCAGGGAGCTCTGCGAGACCTTACCTCAAACAGGCCGAGTTTATATTTCATAATTTGTTAACAACTGGACTTGAGATTCACAAGGACATTTACAGTGGCTTGATTTGGTTACATAGTTATCAGGATACTGTCGATACAGAGAGGATGGCATCGTTGAGGAGGGAGATGCAAGAAGCAGGGATTGAAGAGGGCAAAGAAGTGCTTGTGTCTATCTTGAGAGCGTGCTCAAAGATGGGGGATGTGGAGGAAGCAGAGAACACTTGGCTCAGACTTCTCCGTCTTAATGTAGGTCTTCCGTCACAGGCGTTTGTTTATAAGATGGAAGTGTATGCAAAGGTTGGAGAACCCAAGAAGTCTTTGGAGATATTCAGGGAGATGCAGGAGCACTTGGGTTCAGCCAATGTTGTGGCATATCATAAAGTCATAGAAATTGTCTGTAAAGCTAAAGAAATTGAACTTGCAGAATCCCTCATGGCAGATTTCATCAACACTGGTTTGAAGCCTTCCATGCCAGCTTATATAGATCTAATGAACATGTACTTCAACTTGAGCTTATATGACAAAGTGGAATCAGCCTTCTCCCAATGCCTTGAGATATGTAGACCTAGCAGAACGGTTTACTGTATATACTTGGATTCTTTGGTGAAAGTTCGTAATCTTGATAAAGCTGAGGAGATATTTGACTACATGCAGAGTAATGGGGCAATAGGTATTAATGCCCGTTCCTGCAATACCATATTAAGTGGATACTTGTCAGCTGGAGATGATTTCAAGGCAGAGAAAATATATGGTCTGATGTGTCAGAAGAAATATGATGTTGATCCTCCATTGATGGAAATAATCAACTCTTTCTTGAGTTTGAGAAAGAAACAGGTTAAGAGACATATAAGCATGACGCTGAGCAAAGAACAAAGAGAGATATTAGTAGGTCTACTGCTGGGTGGTTTGCAGATTGAATCAGATGACGACAGAAAGAATCACATGATCCATTTTGAGTTCAGTGAGAATTCTAGCGCACATTCTGTTTTGAGGGGACATGTATATGATCAATACCATGAATGGCTCCATCCTTCGTGCAAGCCCAGTGAGAATACTGAGCACATACCATATAAATTTTCCAGCATCTCACATTCTTATTTTGGTTTCTATGCCGACCAGTTTTGGCCCAATGGCCGGCGGATGATTCCCAAACTAGTCCACCGATGGCTCTCACCATGTGTTCTTGCATACTGGTATATGTATGGGGGCTACAGGACTGCATCGGGAGACATATTGCTGAAAATAAAGGGAAGTGAGGAGGGTGTTCAGAAGATTGTCAGAACCTTGAAGGCAATGTCTCTGGAGTGCAAGGTGAAGAGGAAGGGGAGAGTGTTTTGGATAGGTTTCCTGGGAAGTAATTCTACACTGTTCTGGAAACTAACGGAACCTTACATTCTAGATGACTTGAAACATCTTCTAAAATCGGATGGGGAAAGCTCAGAGAACAATACAGTTGAAAATGAAAACATCAACTTCGCTAGTGGGTCTGACACCGATGAGAATGCCTCTGATAATAGTGATGATGATAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

798

Amino Acids

91.48

Weight (kDa)

6.62

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LAGLIDADG_2	PF03161	579 - 744	1.9e-50	LAGLIDADG DNA endonuclease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15820
fragaria_vesca	FvH4_2g06900
malus_domestica	MD10G1089000.v1.1
prunus_persica	Prupe.8G116000_v2.0.a1
pyrus_communis	pycom10g07190
rosa_chinensis	RchiOBHm_Chr6g0259211
rosa_laevigata	RLG00000014548
rosa_multiflora	Rmu_ssc0000050.1_g000094
rosa_roxburghii	Rroxscaffold_7G00206520
rosa_rugosa	Rorug05G0586000
rosa_samantha	Rh6AG102900 Rh6BG095200 Rh6CG092100 Rh6DG086100
rosa_wichuraiana	Rw6G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AasI	GACNNNNNNGTC	1 cut(s)	1098
AbsI	CCTCGAGG	1 cut(s)	317
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AccBSI	CCGCTC	3 cut(s)	84, 185, 601
AccI	GTMKAC	3 cut(s)	668, 1423, 1753
AccII	CGCG	3 cut(s)	327, 495, 778
AclWI	GGATC	2 cut(s)	1637, 1801
AcoI	YGGCCR	1 cut(s)	1993
AcsI	RAATTY	4 cut(s)	489, 605, 1828, 1934
AcyI	GRCGYC	1 cut(s)	459
AdeI	CACNNNGTG	1 cut(s)	2039
AfaI	GTAC	3 cut(s)	548, 695, 1361
AfiI	CCNNNNNNNGG	5 cut(s)	226, 513, 713, 853, 1995
AflIII	ACRYGT	2 cut(s)	1356, 1858
AgsI	TTSAA	9 cut(s)	1007, 1277, 1321, 1366, 1594, 1778, 2149, 2269, 2318
AhlI	ACTAGT	1 cut(s)	2014
AjnI	CCWGG	3 cut(s)	219, 823, 2208
Alw21I	GWGCWC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
Alw26I	GTCTC	4 cut(s)	832, 1696, 2082, 2163
AlwI	GGATC	2 cut(s)	1637, 1801
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	206, 317
AoxI	GGCC	3 cut(s)	855, 1985, 1993
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	4 cut(s)	489, 605, 1828, 1934
AseI	ATTAAT	1 cut(s)	1536
Asp700I	GAANNNNTTC	1 cut(s)	2218
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	1838
AspS9I	GGNCC	2 cut(s)	360, 1986
AsuC2I	CCSGG	2 cut(s)	515, 708
AsuHPI	GGTGA	4 cut(s)	722, 1477, 2025, 2185
AvaI	CYCGRG	2 cut(s)	206, 317
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	546
BanII	GRGCYC	2 cut(s)	333, 833
BarI	GAAGNNNNNNTAC	2 cut(s)	2206, 2238
BbsI	GAAGAC	1 cut(s)	1106
Bbv12I	GWGCWC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
BbvCI	CCTCAGC	1 cut(s)	1491
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	8 cut(s)	140, 961, 1048, 1135, 1648, 1896, 2019, 2282
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	2345, 2379
BciT130I	CCWGG	3 cut(s)	221, 825, 2210
BciVI	GTATCC	2 cut(s)	940, 1562
BclI	TGATCA	1 cut(s)	1867
BcnI	CCSGG	2 cut(s)	515, 708
BcoDI	GTCTC	4 cut(s)	832, 1696, 2082, 2163
BcuI	ACTAGT	1 cut(s)	2014
BfaI	CTAG	6 cut(s)	660, 1428, 1833, 2015, 2258, 2340
BfmI	CTRYAG	1 cut(s)	2071
BfuI	GTATCC	2 cut(s)	940, 1562
BglII	AGATCT	1 cut(s)	1345
BisI	GCNGC	4 cut(s)	157, 341, 776, 779
BlpI	GCTNAGC	2 cut(s)	782, 1721
BlsI	GCNGC	4 cut(s)	158, 342, 777, 780
Bme1390I	CCNGG	5 cut(s)	221, 515, 708, 825, 2210
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	2 cut(s)	206, 317
BmgT120I	GGNCC	2 cut(s)	360, 1986
BmiI	GGNNCC	3 cut(s)	548, 1886, 2247
BmrFI	CCNGG	5 cut(s)	221, 515, 708, 825, 2210
BmrI	ACTGGG	1 cut(s)	1899
BmsI	GCATC	6 cut(s)	522, 978, 980, 1188, 1953, 2090
BmuI	ACTGGG	1 cut(s)	1899
BpiI	GAAGAC	1 cut(s)	1106
BplI	GAGNNNNNCTC	3 cut(s)	33, 2351, 2383
BpmI	CTGGAG	2 cut(s)	1602, 2183
Bpu10I	CCTNAGC	1 cut(s)	1491
Bpu1102I	GCTNAGC	2 cut(s)	782, 1721
BpuEI	CTTGAG	6 cut(s)	278, 914, 1057, 1390, 1433, 1696
BpuMI	CCSGG	2 cut(s)	515, 708
BsaBI	GATNNNNATC	1 cut(s)	1641
BsaHI	GRCGYC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	776, 824, 2209
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 377, 407
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 513, 713, 853, 1995
Bse118I	RCCGGY	1 cut(s)	1995
Bse1I	ACTGG	5 cut(s)	892, 1318, 1905, 1978, 2057
Bse3DI	GCAATG	2 cut(s)	244, 2160
Bse8I	GATNNNNATC	1 cut(s)	1641
BseBI	CCWGG	3 cut(s)	221, 825, 2210
BseDI	CCNNGG	3 cut(s)	776, 824, 2209
BseGI	GGATG	7 cut(s)	450, 534, 972, 1066, 1888, 2007, 2293
BseJI	GATNNNNATC	1 cut(s)	1641
BseLI	CCNNNNNNNGG	5 cut(s)	226, 513, 713, 853, 1995
BseMI	GCAATG	2 cut(s)	244, 2160
BseMII	CTCAG	5 cut(s)	1102, 1482, 1712, 1908, 2313
BseNI	ACTGG	5 cut(s)	892, 1318, 1905, 1978, 2057
BseRI	GAGGAG	9 cut(s)	40, 43, 46, 49, 52, 112, 994, 1508, 2132
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	1759
Bsh1236I	CGCG	3 cut(s)	327, 495, 778
BshFI	GGCC	3 cut(s)	857, 1987, 1995
BshNI	GGYRCC	1 cut(s)	546
BsiHKAI	GWGCWC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
BsiHKCI	CYCGRG	2 cut(s)	206, 317
BsiSI	CCGG	5 cut(s)	344, 507, 514, 707, 1996
BslFI	GGGAC	2 cut(s)	421, 1869
BslI	CCNNNNNNNGG	5 cut(s)	226, 513, 713, 853, 1995
BsmAI	GTCTC	4 cut(s)	832, 1696, 2082, 2163
BsmFI	GGGAC	2 cut(s)	421, 1869
BsmI	GAATGC	1 cut(s)	2368
BsnI	GGCC	3 cut(s)	857, 1987, 1995
Bso31I	GGTCTC	1 cut(s)	832
BsoBI	CYCGRG	2 cut(s)	206, 317
Bsp1286I	GDGCHC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
Bsp143I	GATC	4 cut(s)	1345, 1642, 1806, 1867
Bsp1720I	GCTNAGC	2 cut(s)	782, 1721
Bsp68I	TCGCGA	2 cut(s)	327, 495
BspANI	GGCC	3 cut(s)	857, 1987, 1995
BspCNI	CTCAG	5 cut(s)	1101, 1483, 1713, 1909, 2312
BspFNI	CGCG	3 cut(s)	327, 495, 778
BspLI	GGNNCC	3 cut(s)	548, 1886, 2247
BspPI	GGATC	2 cut(s)	1637, 1801
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	832
BsrBI	CCGCTC	3 cut(s)	84, 185, 601
BsrDI	GCAATG	2 cut(s)	244, 2160
BsrFI	RCCGGY	1 cut(s)	1995
BsrI	ACTGG	5 cut(s)	892, 1318, 1905, 1978, 2057
BssAI	RCCGGY	1 cut(s)	1995
BssECI	CCNNGG	3 cut(s)	776, 824, 2209
BssMI	GATC	4 cut(s)	1345, 1642, 1806, 1867
BssNI	GRCGYC	1 cut(s)	459
Bst2UI	CCWGG	3 cut(s)	221, 825, 2210
Bst4CI	ACNGT	7 cut(s)	34, 917, 952, 1438, 1445, 2229, 2314
Bst6I	CTCTTC	4 cut(s)	83, 194, 1002, 2171
BstACI	GRCGYC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	7 cut(s)	329, 369, 788, 1045, 1335, 1901, 1997
BstDEI	CTNAG	8 cut(s)	8, 698, 782, 1088, 1491, 1721, 1917, 2299
BstDSI	CCRYGG	1 cut(s)	776
BstEII	GGTNACC	1 cut(s)	767
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	7 cut(s)	450, 534, 972, 1066, 1888, 2007, 2293
BstFNI	CGCG	3 cut(s)	327, 495, 778
BstHHI	GCGC	1 cut(s)	1838
BstKTI	GATC	4 cut(s)	1348, 1645, 1809, 1870
BstMAI	GTCTC	4 cut(s)	832, 1696, 2082, 2163
BstMBI	GATC	4 cut(s)	1345, 1642, 1806, 1867
BstMWI	GCNNNNNNNGC	9 cut(s)	173, 182, 337, 346, 373, 394, 484, 787, 1330
BstNI	CCWGG	3 cut(s)	221, 825, 2210
BstNSI	RCATGY	3 cut(s)	1360, 1513, 1862
BstPI	GGTNACC	1 cut(s)	767
BstSCI	CCNGG	5 cut(s)	219, 513, 706, 823, 2208
BstSFI	CTRYAG	1 cut(s)	2071
BstUI	CGCG	3 cut(s)	327, 495, 778
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	1106
BstX2I	RGATCY	1 cut(s)	1345
BstXI	CCANNNNNNTGG	1 cut(s)	1228
BstYI	RGATCY	1 cut(s)	1345
BsuI	GTATCC	2 cut(s)	940, 1562
BsuRI	GGCC	3 cut(s)	857, 1987, 1995
BtgI	CCRYGG	1 cut(s)	776
BtsCI	GGATG	7 cut(s)	450, 534, 972, 1066, 1888, 2007, 2293
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	7 cut(s)	30, 356, 922, 1311, 1828, 1912, 2225
BtuMI	TCGCGA	2 cut(s)	327, 495
Cac8I	GCNNGC	7 cut(s)	329, 369, 788, 1045, 1335, 1901, 1997
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	1838
Cfr10I	RCCGGY	1 cut(s)	1995
Cfr13I	GGNCC	2 cut(s)	360, 1986
Cfr42I	CCGCGG	1 cut(s)	779
CseI	GACGC	3 cut(s)	263, 467, 1726
Csp6I	GTAC	3 cut(s)	547, 694, 1360
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviQI	GTAC	3 cut(s)	547, 694, 1360
DdeI	CTNAG	8 cut(s)	8, 698, 782, 1088, 1491, 1721, 1917, 2299
DpnI	GATC	4 cut(s)	1347, 1644, 1808, 1869
DpnII	GATC	4 cut(s)	1345, 1642, 1806, 1867
DraIII	CACNNNGTG	1 cut(s)	2039
DrdI	GACNNNNNNGTC	1 cut(s)	1098
DseDI	GACNNNNNNGTC	1 cut(s)	1098
EaeI	YGGCCR	1 cut(s)	1993
Eam1104I	CTCTTC	4 cut(s)	83, 194, 1002, 2171
EarI	CTCTTC	4 cut(s)	83, 194, 1002, 2171
EciI	GGCGGA	5 cut(s)	130, 143, 370, 596, 2014
Ecl136II	GAGCTC	2 cut(s)	331, 831
Eco24I	GRGCYC	2 cut(s)	333, 833
Eco31I	GGTCTC	1 cut(s)	832
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	2 cut(s)	331, 831
Eco88I	CYCGRG	2 cut(s)	206, 317
Eco91I	GGTNACC	1 cut(s)	767
EcoICRI	GAGCTC	2 cut(s)	331, 831
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoO65I	GGTNACC	1 cut(s)	767
EcoRI	GAATTC	2 cut(s)	489, 1828
EcoRII	CCWGG	3 cut(s)	219, 823, 2208
EcoT38I	GRGCYC	2 cut(s)	333, 833
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	2 cut(s)	421, 1869
FauI	CCCGC	2 cut(s)	181, 210
FbaI	TGATCA	1 cut(s)	1867
FblI	GTMKAC	3 cut(s)	668, 1423, 1753
Fnu4HI	GCNGC	4 cut(s)	157, 341, 776, 779
FokI	GGATG	7 cut(s)	457, 541, 979, 1073, 1875, 2014, 2300
FriOI	GRGCYC	2 cut(s)	333, 833
Fsp4HI	GCNGC	4 cut(s)	157, 341, 776, 779
FspBI	CTAG	6 cut(s)	660, 1428, 1833, 2015, 2258, 2340
GlaI	GCGC	1 cut(s)	1837
GluI	GCNGC	4 cut(s)	157, 341, 776, 779
GsaI	CCCAGC	1 cut(s)	1763
GsuI	CTGGAG	2 cut(s)	1602, 2183
HaeIII	GGCC	3 cut(s)	857, 1987, 1995
HapII	CCGG	5 cut(s)	344, 507, 514, 707, 1996
HgaI	GACGC	3 cut(s)	263, 467, 1726
HhaI	GCGC	1 cut(s)	1838
Hin1I	GRCGYC	1 cut(s)	459
Hin6I	GCGC	1 cut(s)	1836
HinP1I	GCGC	1 cut(s)	1836
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HpaI	GTTAAC	1 cut(s)	882
HpaII	CCGG	5 cut(s)	344, 507, 514, 707, 1996
HphI	GGTGA	4 cut(s)	722, 1477, 2025, 2185
Hpy166II	GTNNAC	7 cut(s)	669, 742, 882, 1424, 1441, 1754, 2020
Hpy8I	GTNNAC	7 cut(s)	669, 742, 882, 1424, 1441, 1754, 2020
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	6 cut(s)	707, 1335, 1408, 1902, 2143, 2176
HpyCH4III	ACNGT	7 cut(s)	34, 917, 952, 1438, 1445, 2229, 2314
HpyF10VI	GCNNNNNNNGC	9 cut(s)	173, 182, 337, 346, 373, 394, 484, 787, 1330
HpyF3I	CTNAG	8 cut(s)	8, 698, 782, 1088, 1491, 1721, 1917, 2299
Hsp92I	GRCGYC	1 cut(s)	459
HspAI	GCGC	1 cut(s)	1836
KpnI	GGTACC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	1995
KroNI	GCCGGC	1 cut(s)	1997
Ksp22I	TGATCA	1 cut(s)	1867
KspAI	GTTAAC	1 cut(s)	882
KspI	CCGCGG	1 cut(s)	779
Kzo9I	GATC	4 cut(s)	1345, 1642, 1806, 1867
LmnI	GCTCC	8 cut(s)	22, 89, 346, 385, 709, 828, 1204, 1890
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	6 cut(s)	522, 978, 980, 1188, 1953, 2090
MaeI	CTAG	6 cut(s)	660, 1428, 1833, 2015, 2258, 2340
MaeIII	GTNAC	4 cut(s)	34, 767, 930, 1119
MalI	GATC	4 cut(s)	1347, 1644, 1808, 1869
MbiI	CCGCTC	3 cut(s)	84, 185, 601
MboI	GATC	4 cut(s)	1345, 1642, 1806, 1867
MflI	RGATCY	1 cut(s)	1345
MhlI	GDGCHC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	2 cut(s)	217, 1141
MroNI	GCCGGC	1 cut(s)	1995
MroXI	GAANNNNTTC	1 cut(s)	2218
MseI	TTAA	8 cut(s)	642, 804, 881, 1104, 1536, 1562, 1698, 2395
MslI	CAYNNNNRTG	1 cut(s)	1863
MspA1I	CMGCKG	2 cut(s)	778, 1580
MspI	CCGG	5 cut(s)	344, 507, 514, 707, 1996
MspR9I	CCNGG	5 cut(s)	221, 515, 708, 825, 2210
Mva1269I	GAATGC	1 cut(s)	2368
MvaI	CCWGG	3 cut(s)	221, 825, 2210
MvnI	CGCG	3 cut(s)	327, 495, 778
MwoI	GCNNNNNNNGC	9 cut(s)	173, 182, 337, 346, 373, 394, 484, 787, 1330
NaeI	GCCGGC	1 cut(s)	1997
NciI	CCSGG	2 cut(s)	515, 708
NdeII	GATC	4 cut(s)	1345, 1642, 1806, 1867
NgoMIV	GCCGGC	1 cut(s)	1995
NlaIV	GGNNCC	3 cut(s)	548, 1886, 2247
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	2 cut(s)	34, 1119
NruI	TCGCGA	2 cut(s)	327, 495
NspI	RCATGY	3 cut(s)	1360, 1513, 1862
PaeR7I	CTCGAG	1 cut(s)	317
PciI	ACATGT	2 cut(s)	1356, 1858
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 285, 324
PctI	GAATGC	1 cut(s)	2368
PdiI	GCCGGC	1 cut(s)	1997
PdmI	GAANNNNTTC	1 cut(s)	2218
PkrI	GCNGC	4 cut(s)	158, 342, 777, 780
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
PscI	ACATGT	2 cut(s)	1356, 1858
PshBI	ATTAAT	1 cut(s)	1536
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	2 cut(s)	333, 833
Psp6I	CCWGG	3 cut(s)	219, 823, 2208
PspEI	GGTNACC	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	1759
PspGI	CCWGG	3 cut(s)	219, 823, 2208
PspN4I	GGNNCC	3 cut(s)	548, 1886, 2247
PspPI	GGNCC	2 cut(s)	360, 1986
PspXI	VCTCGAGB	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	1345
PvuII	CAGCTG	1 cut(s)	1580
RruI	TCGCGA	2 cut(s)	327, 495
RsaI	GTAC	3 cut(s)	548, 695, 1361
RsaNI	GTAC	3 cut(s)	547, 694, 1360
RseI	CAYNNNNRTG	1 cut(s)	1863
SacI	GAGCTC	2 cut(s)	333, 833
SacII	CCGCGG	1 cut(s)	779
SaqAI	TTAA	8 cut(s)	642, 804, 881, 1104, 1536, 1562, 1698, 2395
SatI	GCNGC	4 cut(s)	157, 341, 776, 779
Sau3AI	GATC	4 cut(s)	1345, 1642, 1806, 1867
Sau96I	GGNCC	2 cut(s)	360, 1986
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	5 cut(s)	221, 515, 708, 825, 2210
SduI	GDGCHC	7 cut(s)	14, 333, 706, 833, 1049, 1209, 1923
SfaNI	GCATC	6 cut(s)	522, 978, 980, 1188, 1953, 2090
SfcI	CTRYAG	1 cut(s)	2071
Sfr274I	CTCGAG	1 cut(s)	317
Sfr303I	CCGCGG	1 cut(s)	779
SgrBI	CCGCGG	1 cut(s)	779
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	1863
SmlI	CTYRAG	7 cut(s)	293, 317, 893, 1036, 1369, 1412, 1675
SmoI	CTYRAG	7 cut(s)	293, 317, 893, 1036, 1369, 1412, 1675
SpeI	ACTAGT	1 cut(s)	2014
SspMI	CTAG	6 cut(s)	660, 1428, 1833, 2015, 2258, 2340
SstI	GAGCTC	2 cut(s)	333, 833
StyD4I	CCNGG	5 cut(s)	219, 513, 706, 823, 2208
TaaI	ACNGT	7 cut(s)	34, 917, 952, 1438, 1445, 2229, 2314
TaqI	TCGA	6 cut(s)	261, 267, 318, 333, 748, 954
TatI	WGTACW	1 cut(s)	1359
TauI	GCSGC	3 cut(s)	159, 778, 781
Tru1I	TTAA	8 cut(s)	642, 804, 881, 1104, 1536, 1562, 1698, 2395
Tru9I	TTAA	8 cut(s)	642, 804, 881, 1104, 1536, 1562, 1698, 2395
TscAI	CASTG	7 cut(s)	37, 356, 922, 1318, 1828, 1912, 2232
TseFI	GTSAC	2 cut(s)	34, 1119
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	34, 1119
TspDTI	ATGAA	6 cut(s)	665, 860, 1294, 1367, 1893, 2337
TspGWI	ACGGA	4 cut(s)	381, 1088, 1107, 2258
TspRI	CASTG	7 cut(s)	37, 356, 922, 1318, 1828, 1912, 2232
VpaK11BI	GGWCC	1 cut(s)	360
VspI	ATTAAT	1 cut(s)	1536
XagI	CCTNNNNNAGG	1 cut(s)	851
XapI	RAATTY	4 cut(s)	489, 605, 1828, 1934
XbaI	TCTAGA	1 cut(s)	2257
XceI	RCATGY	3 cut(s)	1360, 1513, 1862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1177
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	3 cut(s)	668, 1423, 1753
XmnI	GAANNNNTTC	1 cut(s)	2218
XspI	CTAG	6 cut(s)	660, 1428, 1833, 2015, 2258, 2340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.